TCONS_00036262 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036262
Unique NameTCONS_00036262
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036262 ID=TCONS_00036262|Name=TCONS_00036262|organism=Clytia hemisphaerica|type=transcript|length=315bp
GAGCAGGTCAGGAAGCACTCGAGTTGGTGTGTTGATAAGATGGAGCTTCT
CGAAGTTGTTGCGAAATGTGTAGAAGTCAGTGGCTGAATTGTAACCACTG
AATTTATCAAGCTTGATATGCAAAAGCTGTGTGTCATAGTTCTTGTCGAG
CTCTCTCTTGTTGTACTCTGTGCTCACTTTGGATGCAAAGTCAGATTTGA
AGGAATTTAAAGTCTCATAAAGTTTATCAATCTTTGGGACTTCTGCCAGA
ATGGTCTCATCAACAATTGTCAGTTGTAAAAGTTTCTCATACTTCAAGGC
GATCTTGTCTAACTT
Run BLAST on NCBI

protein sequence of TCONS_00036262-protein

>TCONS_00036262-protein ID=TCONS_00036262-protein|Name=TCONS_00036262-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
KLDKIALKYEKLLQLTIVDETILAEVPKIDKLYETLNSFKSDFASKVSTE
YNKRELDKNYDTQLLHIKLDKFSGYNSATDFYTFRNNFEKLHLINTPTRV
LPDLL
Run BLAST on NCBI

transcript from alignment at sc0001432:2970..3284

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036262 ID=TCONS_00036262|Name=TCONS_00036262|organism=Clytia hemisphaerica|type=transcript|length=315bp|location=Sequence derived from alignment at sc0001432:2970..3284 (Clytia hemisphaerica)
AAGTTAGACAAGATCGCCTTGAAGTATGAGAAACTTTTACAACTGACAAT
TGTTGATGAGACCATTCTGGCAGAAGTCCCAAAGATTGATAAACTTTATG
AGACTTTAAATTCCTTCAAATCTGACTTTGCATCCAAAGTGAGCACAGAG
TACAACAAGAGAGAGCTCGACAAGAACTATGACACACAGCTTTTGCATAT
CAAGCTTGATAAATTCAGTGGTTACAATTCAGCCACTGACTTCTACACAT
TTCGCAACAACTTCGAGAAGCTCCATCTTATCAACACACCAACTCGAGTG
CTTCCTGACCTGCTC

Coding sequence (CDS) from alignment at sc0001432:2970..3284

>TCONS_00036262 ID=TCONS_00036262|Name=TCONS_00036262|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0001432:2970..3284 (Clytia hemisphaerica)
AAGTTAGACAAGATCGCCTTGAAGTATGAGAAACTTTTACAACTGACAAT
TGTTGATGAGACCATTCTGGCAGAAGTCCCAAAGATTGATAAACTTTATG
AGACTTTAAATTCCTTCAAATCTGACTTTGCATCCAAAGTGAGCACAGAG
TACAACAAGAGAGAGCTCGACAAGAACTATGACACACAGCTTTTGCATAT
CAAGCTTGATAAATTCAGTGGTTACAATTCAGCCACTGACTTCTACACAT
TTCGCAACAACTTCGAGAAGCTCCATCTTATCAACACACCAACTCGAGTG
CTTCCTGACCTGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021326XLOC_021326Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036262-exon-sc0001432-1491911889:2970..3284TCONS_00036262-exon-sc0001432-1491911889:2970..3284Clytia hemisphaericaexon
TCONS_00036262-exon-sc0001432-1510915933:2970..3284TCONS_00036262-exon-sc0001432-1510915933:2970..3284Clytia hemisphaericaexon
TCONS_00036262-exon-sc0001432-1575043694:2970..3284TCONS_00036262-exon-sc0001432-1575043694:2970..3284Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036262-proteinTCONS_00036262-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001432supercontigsc0001432:2970..3284 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.81489	1.31398	1.13661	0.913476	1.35375	0.231117	0.518593	0	0	0.533138	0	0.445707	0.222544	0.877833	0	0	0	0	0	0	0	0	0.383666	0.443897	0.718529	0	0.917655	0	0	0.756795
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036262 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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