TCONS_00036258 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036258
Unique NameTCONS_00036258
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036258 ID=TCONS_00036258|Name=TCONS_00036258|organism=Clytia hemisphaerica|type=transcript|length=641bp
ATCAACCTGCATTCTTGGGAGTGTGAAGTTCATTCTGGGTAAATACTGTC
GGCCCATTAACACAGTACCAACCGGGGTTGCGATCAACCCGCACTCTTCA
GGAGTGGTAAGTTCATCTGGGTTAAATACTGTTGGCCCATTAAACACAGT
ACTAACCGGGGCTGCGATCAACCCGCACTCTTCAGGAGTGGTGAGTTCAT
CTGGGTAAATACTGTTGGCCCATTAAACACAGTACTAACCGGGGCTGCGA
TCAACCCGCACTCTTTGGGAGTGACAAGTTCAATGTGTAATGGCTGACTT
GCTAAACTGTCCAATATGTGATGCAGATGCCGAAGGCTCGTCAATTGCGT
GTGATGATTGCAACATGTGGTATCATCGTGAATGCTTGGACATGAGCATT
AACACATTCAATAACTTTGTAAATGATGAATCAATGCCATGGACATGTCA
AAATTGTGATTTTCAGAGTGATTCCAACAGTTCGAACACAACATTGGATA
CTCCCAAAACACCCAACAACAGCAAACCACATGTAAGAACCAAAACAGCA
GAAAGATTGACTCTTGCAGTTTGCAACTTCCAAGGTATCATGAACAAACG
CACAGACCTCGAAAACTTTCTCCATAACCACAAAATTGATG
Run BLAST on NCBI

protein sequence of TCONS_00036258-protein

>TCONS_00036258-protein ID=TCONS_00036258-protein|Name=TCONS_00036258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MADLLNCPICDADAEGSSIACDDCNMWYHRECLDMSINTFNNFVNDESMP
WTCQNCDFQSDSNSSNTTLDTPKTPNNSKPHVRTKTAERLTLAVCNFQGI
MNKRTDLENFLHNHKID
Run BLAST on NCBI

transcript from alignment at sc0001431:55178..55818

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036258 ID=TCONS_00036258|Name=TCONS_00036258|organism=Clytia hemisphaerica|type=transcript|length=641bp|location=Sequence derived from alignment at sc0001431:55178..55818 (Clytia hemisphaerica)
CATCAATTTTGTGGTTATGGAGAAAGTTTTCGAGGTCTGTGCGTTTGTTC
ATGATACCTTGGAAGTTGCAAACTGCAAGAGTCAATCTTTCTGCTGTTTT
GGTTCTTACATGTGGTTTGCTGTTGTTGGGTGTTTTGGGAGTATCCAATG
TTGTGTTCGAACTGTTGGAATCACTCTGAAAATCACAATTTTGACATGTC
CATGGCATTGATTCATCATTTACAAAGTTATTGAATGTGTTAATGCTCAT
GTCCAAGCATTCACGATGATACCACATGTTGCAATCATCACACGCAATTG
ACGAGCCTTCGGCATCTGCATCACATATTGGACAGTTTAGCAAGTCAGCC
ATTACACATTGAACTTGTCACTCCCAAAGAGTGCGGGTTGATCGCAGCCC
CGGTTAGTACTGTGTTTAATGGGCCAACAGTATTTACCCAGATGAACTCA
CCACTCCTGAAGAGTGCGGGTTGATCGCAGCCCCGGTTAGTACTGTGTTT
AATGGGCCAACAGTATTTAACCCAGATGAACTTACCACTCCTGAAGAGTG
CGGGTTGATCGCAACCCCGGTTGGTACTGTGTTAATGGGCCGACAGTATT
TACCCAGAATGAACTTCACACTCCCAAGAATGCAGGTTGAT

Coding sequence (CDS) from alignment at sc0001431:55178..55818

>TCONS_00036258 ID=TCONS_00036258|Name=TCONS_00036258|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at sc0001431:55178..55818 (Clytia hemisphaerica)
ATCAATTTTGTGGTTATGGAGAAAGTTTTCGAGGTCTGTGCGTTTGTTCA
TGATACCTTGGAAGTTGCAAACTGCAAGAGTCAATCTTTCTGCTGTTTTG
GTTCTTACATGTGGTTTGCTGTTGTTGGGTGTTTTGGGAGTATCCAATGT
TGTGTTCGAACTGTTGGAATCACTCTGAAAATCACAATTTTGACATGTCC
ATGGCATTGATTCATCATTTACAAAGTTATTGAATGTGTTAATGCTCATG
TCCAAGCATTCACGATGATACCACATGTTGCAATCATCACACGCAATTGA
CGAGCCTTCGGCATCTGCATCACATATTGGACAGTTTAGCAAGTCAGCCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021324XLOC_021324Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036258-proteinTCONS_00036258-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036258-exon-sc0001431-1491911889:55178..55818TCONS_00036258-exon-sc0001431-1491911889:55178..55818Clytia hemisphaericaexon
TCONS_00036258-exon-sc0001431-1510915933:55178..55818TCONS_00036258-exon-sc0001431-1510915933:55178..55818Clytia hemisphaericaexon
TCONS_00036258-exon-sc0001431-1575043694:55178..55818TCONS_00036258-exon-sc0001431-1575043694:55178..55818Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001431supercontigsc0001431:55178..55818 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.246373	0.240253	0.557913	1.09166	0.442997	0.525094	0.105584	0.197693	0.207614	0.342885	0.582421	0.0546944	0.382329	0.0567217	0.186532	0.35031	0.0616505	0.0631898	0.0873001	0.27406	0.158805	0.232379	0	0.0856071	0	0.157385	0.563044	0.240358	0.182303	0.278607
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036258 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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