TCONS_00036251 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036251
Unique NameTCONS_00036251
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2663

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036251 ID=TCONS_00036251|Name=TCONS_00036251|organism=Clytia hemisphaerica|type=transcript|length=2663bp
CGATAAATGAGATTTTCTCATATAATGgttaaaaatttcatcaaagaaaG
ATTAATATGTCTATTGTTGAAGAAAGTCGAGCAGATGTTGGACCAAAAGT
CTCTTCATAGGGAAGACGACAACAAAGTTTGTAAAGTGAACCAAAATAGC
CATGTTCACACTTCCTCGCTTAAAAAAACGGTGAGATGTTTAACGTTCGC
GCAGTGGCTTTCTTTATGAGACAAACAGATTTCATTATGAAGGAGAGTGT
AAAGTTATACTTAGAGCTGTAGAATGTTTTGtttcgaagaagaagaagaa
aaagaagaagaagagtaTATAGGAGACCTGAATGAAAGACGAgccctttc
acaaaaataacaAGTAGAGAAAGTTGAGAAAGCgtcagagagagagagaa
agagacTGGAGCAGAGTACAGATTATTTGTCAAGAAAGTGGAGAAAACCT
TGTAAAGCTCACTTCGACGAAAANGAGATTATTTGTCAAGAAACTGGAGA
AAACCTTGTAAAGCTCATTTCGACGAAAAGAAGAACGTGAGCcatcaaaa
gctcaaaaaaaaagaaatgacagcaaaagaagaaaaaaaggaacagaaat
agaaaaagaagatgatTTATTTATAAGTGAAGAACCTAGCTTGTTGTTAT
CCACACTCCAATCCTTACAACTTATACTTTCGTCGTCGAAAAGAACgcac
aaaaaagcaaaaattggatttcttCATATGTATATATTAAAAGTGAATAA
TAACAATTAACGAAAAAGATTGATGAAGATTATGAAATAAAAGTTGGAAT
TCGAATTTCTTGACTGAACTATTTTGATTTTGTAGTTGAAGGACTGCTAC
AGTCAAGAGATATGATGAAGTTTAACATGAAGTTGAAAGGGACATCCAAT
AATTCCAAACCAGCCAAGGTCAAAGTACCAAAAATTGagatcaatgaatg
taaagttaAAACAAAGGACCacaaaaagttggaaaatgaaATGTTACAAC
AAGCGAAGGAAGCTCAGCTTTTGTTGGAACAATTATTATGCGAAGATCGT
TATGATGAATTCGGGAGACCTCGATCGAACTCACTGAACGCAACAGTTGA
AAATTTGATTCTTTCCAAGAAAGTTCCAAACAAAGCGACCAGCAAACCGC
GTGGTAGTGTGCCCACACTCACCAACATTCCCAGGAAATTCTTAATACGT
AACAAAAACAACTCCAACGACCAATCCGCAACATCTTTACCTTGCTCACC
CAAAGATAATCGTCGCACCAAAATGAGTCCTTTAAAATTCATGCGTAAAT
ATAATACCGACAACTCACAAACGACGAGCAACGAGTGCCGATCACCGAAA
TCTAAACGAACATTCGAACCGAAAGACGTGACTGCAGAGAGCTCGCCCAG
CGAGGCGGCTTCGAGCGCAAAATGTACTTCTTATAAACAAATGAACCAAG
AAGATGAACAAGATGAGAGTCAGCAAAATTGGGAAGGGGAAAGCATATAG
TTAAGTTGAGAGAAAGTGTTCAAATCCTTTAAAAGGACTTTACAAGGAGA
AGCAAGAACACAAAACCTCATTTTGGGCCACAAAAGCGACCCACAATTCA
ATAAGGGAATAGCGAACGAATAGTTTGTTGACGAGATGAATTTGTGTGTT
TATTAACATCGATCCGTaatagatattttgaaaaatggatAATTTATTTC
CAAGGCCCTCAAgctttacataaattattgtccGTTAAAGTAGCACGGAC
TTTCTGCCTCTGATTAGATAAAGGAAGCGCTCTCagcgaccattaaattt
tcgaTTTACAAAGGAATATTTTTACTTAAGTGGGTAGTTTGAAAACGTTT
GGGTTTTATTTTCTAGAATTAGAAATTTATATCTCAACTATAAAATGTTC
CAactttgtatttctcaaggaaaattgTTATAAACTGTCAAAGGGGTATT
TTTACCAAATTCTAACCAGTTTTCGACAAAAATTTACGTGTTGAAACTTA
TTATAGAGGAAACATATGAAATATCTGAGTACATTGGAAATTACATCAAT
TTGCCTAAAAATCTCATCACGATGTTATCAATTTATTTCGagaagaaatg
aaaattgaaacaaaaattaaGGAATTTCTTAAAGATGGAAAAAGAGTAAA
CTCAATAAAAACACGTTTAAGTTCTAGCTTTTTATCTAATGAGTGCTACA
GCAGCAGTGCTACAGAATCGCCAGAAAATTCTGAGTAAGATAATATAaga
cccccttctcacagacccggtagattATTTTTAGCCATTGGGGAGTGGGG
CTAGAAATAACAGACAAAAATACGATTGGGATTGGGGATATTCCCATATG
TTTCTAAGGCCCTGACCATCGTGAATTTTAATATTTGtcacgtacaaaat
ataaatttctgcctgatgtagctCACAAAACtttggcatgttatacatat
tctgttaggccaactatccttgagtctgaaaatttaagaagcgcagagaa
aaaatttaatgaagaagaaaatgaagacttttgcggcgaagagtatttca
actttgaagagcttattttggtcgaagaagaaatattttgaaaaaacttt
tgtggtagatggtgtatcttttaccgaactaaaaatatattttcggaaat
tttttctaaaagc
Run BLAST on NCBI

transcript from alignment at sc0001431:31700..36803-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036251 ID=TCONS_00036251|Name=TCONS_00036251|organism=Clytia hemisphaerica|type=transcript|length=5104bp|location=Sequence derived from alignment at sc0001431:31700..36803- (Clytia hemisphaerica)
CGATAAATGAGATTTTCTCATATAATGGTTAAAAATTTCATCAAAGAAAG
ATTAATATGTCTATTGTTGAAGAAAGTCGAGCAGATGTTGGACCAAAAGT
CTCTTCATAGGGAAGACGACAACAAAGTTTGTAAAGTGAACCAAAATAGC
CATGTTCACACTTCCTCGCTTAAAAAAACGGTGAGATGTTTAACGTTCGC
GCAGTGGCTTTCTTTATGAGACAAACAGATTTCATTATGAAGGAGAGTGT
AAAGTTATACTTAGAGCTGTAGAATGTTTTGTTTCGAAGAAGAAGAAGAA
AAAGAAGAAGAAGAGTATATAGGAGACCTGAATGAAAGACGAGCCCTTTC
ACAAAAATAACAAGTAGAGAAAGTTGAGAAAGCGTCAGAGAGAGAGAGAA
AGAGACTGGAGCAGAGTACAGATTATTTGTCAAGAAAGTGGAGAAAACCT
TGTAAAGCTCACTTCGACGAAAANGAGATTATTTGTCAAGAAACTGGAGA
AAACCTTGTAAAGCTCATTTCGACGAAAAGAAGAACGTGAGCCATCAAAA
GCTCAAAAAAAAAGAAATGACAGCAAAAGAAGAAAAAAAGGAACAGAAAT
AGAAAAAGAAGATGATTTATTTATAAGTGAAGAACCTAGCTTGTTGTTAT
CCACACTCCAATCCTTACAACTTATACTTTCGTCGTCGAAAAGAACGCAC
AAAAAAGCAAAAATTGGATTTCTTCATATGTATATATTAAAAGTGAATAA
TAACAATTAACGAAAAAGATTGATGAAGATTATGAAATAAAAGTTGGAAT
TCGAATTTCTTGACTGAACTATTTTGATTTTGTAGTTGAAGGACTGCTAC
AGTCAAGAGATATGATGAAGTTTAACATGAAGTTGAAAGGGACATCCAAT
AATTCCAAACCAGCCAAGGTCAAAGTACCAAAAATTGAGATCAATGAATG
TAAAGTTAAAACAAAGGACCACAAAAAGTTGGAAAATGAAATGTTACAAC
AAGCGAAGGAAGCTCAGCTTTTGTTGGAACAATTATTATGCGAAGGTGAG
TCATCGATTTTCACCTATGGAACATTTTATGAATTTGTAGGTGACGGGTA
GGTGAATGAACTCGGTCGAGTGGCCACCCCTAAGTTGACATTTAAACCAC
TGTTTCGATGTGTACATGTACTACACCCCTATCTCGGCATTAGTACCCCT
CCTCTGTTATTTAGATAGCATATTTACTCACCAAGGATAAGAGGAGACTT
CGAGATCATGCTTCAATTTTTTTCCGTTTTTATGATTGATATCCAGAAAA
TGACAGCCCTTGATTTATGTCTGTGAATTTAAATATTGGAAAAAGTCTAC
TATGATCTACCATAGAGACCAATTTTTCAAGGACATGGGTATGGGATGTT
ATATTATACCAAGTGAAAACTTTTGAAGCCTCTGATAGAGAGAATTATCA
ACTGCCAGAGATGGCAGAGAAGGTAATCTATACCCATACATAATCACAAC
TTAGAAATCGAGGCTCCGCAGTAATTTCGTTGCATTATTTCTTCAAATTA
TTTCCTAATGTTCTGAACGATAAGATCTGCAAAAAACAACTTAAAATTAA
TTTCTTACGTAATTTTAGTCTTCAATATTCTATTCTTATTTTGCTGACGT
CAGCCACCCACGAAGAAAGGATTTACGTCAAAAATGCGTGTGCTTTATAA
AATAATTTTGTGAAGAATCGAAGAAGAGAAATTGTTTCAACTTCTTTTCA
TCTTCAAAAAAAATGAAGAAAGAAACGGGACTGAAATAAGATATCGTTTT
CTATTGAGAAAAGATAAAGTTGGCTGAAAAAAATGAATGTAGGAATGAAA
AGAAAAGGGAATATCATTTTGATAAAAGTTCTGAAAGTAAGAACACAAAA
TTTATGCTAGACTGAGAATATTGAACTTTTGTGTTCATCCTTGGACAATA
TCTTGGACTGAGGTCGACAATTTCGAAGTGTCTAAGTGTGAACTTGTCAA
AAAATAAAAATAATAATAAAAAATTGATTAGAAAAGATTCCATTTGCTTG
ATTTCTTTTTGCTTTGTATTCTAACAGTGTGATGAAACTTAAAGGTCCTT
CAATAAGGGTAAATTTTATCATCATATGAAATTTTCAGCTTGAGTTCAAT
GAAAATCAAATCAACTGATTTTGAAATAACATCAAAATATTTTGGAAATA
ATTTCCGGTCGGTTCATCAAAATATCCTCTCCATTTCATCTCCATAGCAA
CAGAAACATTTCCCACCTTACGCATTTCGTTGAAAATTCTTCACAGTGTT
ACAGGTGTGGTTTATTGAAAATGCGACTTCCGCCCCTGTTTCAACCCCTG
TCTCAGTGACCATCCGATCAGAATTTTAAGTCAGCGGGGATGGATAATCC
TTTTTGGTAAAGGGTATGGTCTTAAAGGGACATAACACTACTTGCGAAAT
TTGTAAACAAACTGTATGCAGCGGATACAAAATCAAAACAAATGTCACAT
GTCAAAATAAAAAATCAAACCAAATATGGCTAATTTTCATTGTTCAATTG
TTTTACAAGTTTGTTTTGTACACTTGATTTTAATTGTTCTCTTTAATGAC
ACGTGGTTCGCGCAATGTTTACCATAAATAACGTTATTTTATTACAGAAA
GTTCCAATGGGGATGATCAATTTTTTACAATGTAGAATAAATAGTAATGG
AATGTTCTTAGGATGTTTTTCTCACCCGGGACAAAGCTCGACCTTTTCTA
ATAACGAGGAATTTTTTTGGGTGATTTTGGGATAAATCTCGTCACAATGC
TCGCTCAAAATTATGGCTTTTTATCAGTCTTTTTCTTGAAGTAGATCAAA
AAGTTGAAATTTTTTACTTTCTTTGGCACAAAGACGACATGAGAATGGCA
TCTAAGAGAGAGCCTAAGTGTTGTTTTGGCTTTTCTTTCCAAAGTCTTAA
AAAATATACATTTTTGTTTCTTCAAATTCTTTTATATACTGATGGCTAAA
TAAATGCATGACCATTAAGTTTATAGTCCCCAAAGGGCAAGAAAGGAATA
TCTAAACTCTCTCAAGGAATAAAAAGTGAAGCTTTAAGATTTGCGCCGCA
TTTAGAATTACGGATTGAATCAAGTCCTTTCTTTGTTTTCGCGCGACATA
TTTTTCGATCCGACGATAGGTTTTACTTTTAATCTGGCGTTTGTGTGAAA
ACCACACGTTTTGGATGGAAAATTAGCGGAGGGGGACACTTATTACCCGA
GAGTATTCTTGTGGGTTTTAAGGGTTATTTAGATTGTAACTTGTTTTTTG
AAGCACTTAACCACTTAGGTCTAATTGGCTTATCATAAAGCAAGTAACAT
TTCAAGAAAGAAAGTTTAAAAAAGTTGCGAGGGTGAATTTTCGGCTAAAT
TTTCCCTAGAATGTAGAGGCCCAATTATTAAGGGCTTTATTATGGCCCAT
GGTCAAATGCTATTAACAATTTCATTCATTTTTCAGATCGTTATGATGAA
TTCGGGAGACCTCGATCGAACTCACTGAACGCAACAGTTGAAAATTTGAT
TCTTTCCAAGAAAGTTCCAAACAAAGCGACCAGCAAACCGCGTGGTAGTG
TGCCCACACTCACCAACATTCCCAGGAAATTCTTAATACGTAACAAAAAC
AACTCCAACGACCAATCCGCAACATCTTTACCTTGCTCACCCAAAGATAA
TCGTCGCACCAAAATGAGTCCTTTAAAATTCATGCGTAAATATAATACCG
ACAACTCACAAACGACGAGCAACGAGTGCCGATCACCGAAATCTAAACGA
ACATTCGAACCGAAAGACGTGACTGCAGAGAGCTCGCCCAGCGAGGCGGC
TTCGAGCGCAAAATGTACTTCTTATAAACAAATGAACCAAGAAGATGAAC
AAGATGAGAGTCAGCAAAATTGGGAAGGGGAAAGCATATAGTTAAGTTGA
GAGAAAGTGTTCAAATCCTTTAAAAGGACTTTACAAGGAGAAGCAAGAAC
ACAAAACCTCATTTTGGGCCACAAAAGCGACCCACAATTCAATAAGGGAA
TAGCGAACGAATAGTTTGTTGACGAGATGAATTTGTGTGTTTATTAACAT
CGATCCGTAATAGATATTTTGAAAAATGGATAATTTATTTCCAAGGCCCT
CAAGCTTTACATAAATTATTGTCCGTTAAAGTAGCACGGACTTTCTGCCT
CTGATTAGATAAAGGAAGCGCTCTCAGCGACCATTAAATTTTCGATTTAC
AAAGGAATATTTTTACTTAAGTGGGTAGTTTGAAAACGTTTGGGTTTTAT
TTTCTAGAATTAGAAATTTATATCTCAACTATAAAATGTTCCAACTTTGT
ATTTCTCAAGGAAAATTGTTATAAACTGTCAAAGGGGTATTTTTACCAAA
TTCTAACCAGTTTTCGACAAAAATTTACGTGTTGAAACTTATTATAGAGG
AAACATATGAAATATCTGAGTACATTGGAAATTACATCAATTTGCCTAAA
AATCTCATCACGATGTTATCAATTTATTTCGAGAAGAAATGAAAATTGAA
ACAAAAATTAAGGAATTTCTTAAAGATGGAAAAAGAGTAAACTCAATAAA
AACACGTTTAAGTTCTAGCTTTTTATCTAATGAGTGCTACAGCAGCAGTG
CTACAGAATCGCCAGAAAATTCTGAGTAAGATAATATAAGACCCCCTTCT
CACAGACCCGGTAGATTATTTTTAGCCATTGGGGAGTGGGGCTAGAAATA
ACAGACAAAAATACGATTGGGATTGGGGATATTCCCATATGTTTCTAAGG
CCCTGACCATCGTGAATTTTAATATTTGTCACGTACAAAATATAAATTTC
TGCCTGATGTAGCTCACAAAACTTTGGCATGTTATACATATTCTGTTAGG
CCAACTATCCTTGAGTCTGAAAATTTAAGAAGCGCAGAGAAAAAATTTAA
TGAAGAAGAAAATGAAGACTTTTGCGGCGAAGAGTATTTCAACTTTGAAG
AGCTTATTTTGGTCGAAGAAGAAATATTTTGAAAAAACTTTTGTGGTAGA
TGGTGTATCTTTTACCGAACTAAAAATATATTTTCGGAAATTTTTTCTAA
AAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021320XLOC_021320Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036251-exon-sc0001431-1575043694:35759..36803TCONS_00036251-exon-sc0001431-1575043694:35759..36803Clytia hemisphaericaexon
TCONS_00036251-exon-sc0001431-1575043694:31700..33317TCONS_00036251-exon-sc0001431-1575043694:31700..33317Clytia hemisphaericaexon
TCONS_00036251-exon-sc0001431-1510915933:35759..36803TCONS_00036251-exon-sc0001431-1510915933:35759..36803Clytia hemisphaericaexon
TCONS_00036251-exon-sc0001431-1510915933:31700..33317TCONS_00036251-exon-sc0001431-1510915933:31700..33317Clytia hemisphaericaexon
TCONS_00036251-exon-sc0001431-1491911889:35759..36803TCONS_00036251-exon-sc0001431-1491911889:35759..36803Clytia hemisphaericaexon
TCONS_00036251-exon-sc0001431-1491911889:31700..33317TCONS_00036251-exon-sc0001431-1491911889:31700..33317Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001431supercontigsc0001431:31700..36803 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0780624	0.0844778	0.362332	0.220499	0.6316	0.311937	12.4192	15.4367	13.5721	11.5125	8.06776	14.2669	2.25882	2.51156	0	0.0230737	3.03104	4.31087	6.49844	8.69791	9.64653	10.1244	2.59114	4.35487	1.78738	5.03828	1.21952	1.25596	1.82662	2.30589
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036251 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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