TCONS_00036249 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036249
Unique NameTCONS_00036249
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036249 ID=TCONS_00036249|Name=TCONS_00036249|organism=Clytia hemisphaerica|type=transcript|length=692bp
AAATGTttataaattttcagtttgtcCAGATgaacttttgattgaaatag
ACCAACCACTGTTTGCGAGAAAATGAACGTCTTCTGGAGGACTGACCTCC
CAACTCCTGCCGTTCGACGAATAAAAACAGGAACATCGTGCGTTATTGTA
TTTCGATATAGAATTGTCCAATTAATTTGGAATATAAAAACTGTCGAGGA
AAGAGGCCTGAGTTGCTATGCAACCTTCGATTTCCACCTGCCGTATGAAC
AATCGATGAGGGTTTTTCGACAAACATTTCGTGTTTCTCTTCACTGGAGA
TACAGTGAGAAAAGTGTAGACTACATTGTCTTTCTGCTTTTCTCTTACCA
CCAACATGTGGTTGGCTCATCCGACGCGCAAAAAACTCTACTCGTTGAAT
GGTAAGGCTCTTTGGTTTAATGAGCTGTTTACATGATTGGGTTTGATCCA
TCGCTTCGTTTCTTTGTTTGTTCGTTGTGCTTTTCTTGCAGATCTTCTTA
ATAATCTGGTCATTTGTGGCAAGCTTTTTTCGCTATTAGTGGAGTTGGAT
TGGTAGAGATTTTTTGAACAGTCTTTTATAATGGTGGATCGAAATAAGAG
AAACAGCTTCGATGCCAATTCTTCCATCTCTAAGAAAGTTTCAAAAGTGA
AAGTGTCATAATTAGTCACAAAAATCCTTCATTTCTTTTTCG
Run BLAST on NCBI

transcript from alignment at sc0001431:18405..19096+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036249 ID=TCONS_00036249|Name=TCONS_00036249|organism=Clytia hemisphaerica|type=transcript|length=692bp|location=Sequence derived from alignment at sc0001431:18405..19096+ (Clytia hemisphaerica)
AAATGTttataaattttcagtttgtcCAGATgaacttttgattgaaatag
ACCAACCACTGTTTGCGAGAAAATGAACGTCTTCTGGAGGACTGACCTCC
CAACTCCTGCCGTTCGACGAATAAAAACAGGAACATCGTGCGTTATTGTA
TTTCGATATAGAATTGTCCAATTAATTTGGAATATAAAAACTGTCGAGGA
AAGAGGCCTGAGTTGCTATGCAACCTTCGATTTCCACCTGCCGTATGAAC
AATCGATGAGGGTTTTTCGACAAACATTTCGTGTTTCTCTTCACTGGAGA
TACAGTGAGAAAAGTGTAGACTACATTGTCTTTCTGCTTTTCTCTTACCA
CCAACATGTGGTTGGCTCATCCGACGCGCAAAAAACTCTACTCGTTGAAT
GGTAAGGCTCTTTGGTTTAATGAGCTGTTTACATGATTGGGTTTGATCCA
TCGCTTCGTTTCTTTGTTTGTTCGTTGTGCTTTTCTTGCAGATCTTCTTA
ATAATCTGGTCATTTGTGGCAAGCTTTTTTCGCTATTAGTGGAGTTGGAT
TGGTAGAGATTTTTTGAACAGTCTTTTATAATGGTGGATCGAAATAAGAG
AAACAGCTTCGATGCCAATTCTTCCATCTCTAAGAAAGTTTCAAAAGTGA
AAGTGTCATAATTAGTCACAAAAATCCTTCATTTCTTTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021319XLOC_021319Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036249-exon-sc0001431-1491911889:18405..19096TCONS_00036249-exon-sc0001431-1491911889:18405..19096Clytia hemisphaericaexon
TCONS_00036249-exon-sc0001431-1510915933:18405..19096TCONS_00036249-exon-sc0001431-1510915933:18405..19096Clytia hemisphaericaexon
TCONS_00036249-exon-sc0001431-1575043694:18405..19096TCONS_00036249-exon-sc0001431-1575043694:18405..19096Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001431supercontigsc0001431:18405..19096 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0734529	0.214884	0.914838	1.13912	0	0	0	0.0884092	0.185692	0.0766698	0.446506	0.0978384	0	0	0	0.0895202	0.112366	0	0	0.408536	0.0710184	0.207842	0	0.0765679	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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