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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036248 ID=TCONS_00036248|Name=TCONS_00036248|organism=Clytia hemisphaerica|type=transcript|length=823bp
aaatgaaaagaaatgaaaCTTACTTGGATGAAAAGAAGGAAAAGGTCAAG
ATGTCATCTCTTCGACAACTTATCAAAAGTACTATCCTTGCTTTATTCAA
TTTCTTTATCCTCTTTAGTCTCGTTCCCTTTCTGTGATTTTCAATGCAGC
TTGTGAAGAAGTTTTCCTTTCTTGAGGTGATAACTATCGGTAGTATATTA
ATGGCCAATAAAAATTCCTCTTTCCCTTGGGTTCTGTTCTCTTTCTTTCA
GGTGGCAGCTGTATTAGTGGAAGTAATACTCTAATCTTACTTTCCATgat
aacaaaaatgaaaaggggTGCAACAACACGCCATGTTAAAAGCTTTCACT
ACTTCTCACATAAAGAAGAGCAGATTCTGTGATTCCAGCTGATGAGTCAT
TTGATTTGCAAATAGTCAATTCAAGAGAAGATGGCGGCTCATTTAACTGC
AGGCACCAAACTCAAATTTGGCTACCCAAAATCTCGCCAGCAACACGATG
CGACCATCGATAAGTTAAAAGCAGAAACAGAAACGCCCATCAAGCCTTCg
ctcaaaattttgttgatcAGAGGCTTCATCATGGTTGTCTACCTGTTGCT
AGGTGCTCTCGTCTTTCGTGCTCTGGAACACGAGGACGAGGACCCTAATG
CTAGAGATACACTAGCCTTTGAGCGCAAACAATTGCAACTAGAGTTCAAT
ATCAGTGATGTGAGGCTGAAACGGTTTGAAGATCTGGTTCGAAAAAGGAG
ACAAGAACCAAAAGATTGGGATTATTACCAATCACTGTATTTTGCGTCCA
CTGTCACTACAACTATCGGTTTG Run BLAST on NCBI protein sequence of TCONS_00036248-protein >TCONS_00036248-protein ID=TCONS_00036248-protein|Name=TCONS_00036248-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MAAHLTAGTKLKFGYPKSRQQHDATIDKLKAETETPIKPSLKILLIRGFI
MVVYLLLGALVFRALEHEDEDPNARDTLAFERKQLQLEFNISDVRLKRFE
DLVRKRRQEPKDWDYYQSLYFASTVTTTIGL Run BLAST on NCBI transcript from alignment at sc0001431:14954..21126+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036248 ID=TCONS_00036248|Name=TCONS_00036248|organism=Clytia hemisphaerica|type=transcript|length=6173bp|location=Sequence derived from alignment at sc0001431:14954..21126+ (Clytia hemisphaerica)
aaatgaaaagaaatgaaaCTTACTTGGATGAAAAGAAGGAAAAGGTCAAG
ATGTCATCTCTTCGACAACTTATCAAAAGTACTATCCTTGCTTTATTCAA
TTTCTTTATCCTCTTTAGTCTCGTTCCCTTTCTGTGATTTTCAATGCAGC
TTGTGAAGAAGTTTTCCTTTCTTGAGGTGATAACTATCGGTAGTATATTA
ATGGCCAATAAAAATTCCTCTTTCCCTTGGGTTCTGTTCTCTTTCTTTCA
GGTGGCAGCTGTATTAGTGGAAGTAATACTCTAATCTTACTTTCCATgat
aacaaaaatgaaaaggggTGCAACAACACGCCATGTTAAAAGCTTTCACT
ACTTCTCACATAAAGAAGAGCAGATTCTGTGATTCCAGGTAAGGTCAGTT
TGTTTATTTACACCGGTGGGAGTAAGGAATAGCCAATAGtcttttaaaat
tgcattttttgtgCCTCCCTTCCCAGTGTTAAACGATGGTTAATATATTA
GAATTTagtttattcatgatatgcaccactggagagtcattctgagaact
ttcaaaattttccacccgatacgtcacttaaacaatagaaaaagtgacgt
gtTGGgtgcactgacctttatatatccctggaccaagcaatatccgccat
ctttgattggagtatttttggaattggtacccgagaagaagccattgcaa
tgttaaaaattaacgtctaacgccgctatatcatcaaaagaatttgagaa
aaagtagacctagcgctctcgatgcatttacaccgatatcgagtagtgcc
gccattagggtacgacttttcaaaaaactccaatcaaaaattttgcttag
CTGGGATcgagaagcttggtccagggtatataaaggtcaaaaacagaaaa
gttgcatctTATTTATGGTCAtgtgatatgcaccactgcaatgacttcac
gactTTTTTCGACTTTTATAGAGTTGTTATACTTATTTTCGTCTTCCAGG
CTAGCGCAAATCAAGACGTTCTCTTACAAAAACGTGTAGGTTGGTTCCAA
GCTAAATCTATTTCACAGAAAGGATTCGCGATAAACGACTTGCAATCGAA
ATATGTTTTGAACGATACTTCTTCGTAATGAAATAAGATTCGTTTTTATG
TTGCTTCCTGGATTAAGTTCTCCCAAAACTGTTGTTTTTAGTATCCTAGA
AGTATATCTTTCTTTTAGTAAAAGAAGACCTCGTTTGAAATAGGTTATTT
AAGAAGAGAGATAAATCTGTTTAATTTTAAGTGAACAGTGAGCGATGCTT
ATCGCAAGCCTAttcctatttttttattttcgttggTCAGAAAGAGATAG
AGTTCATACCTGTTTGATGAGAATGGTGGTGAGTTCCCTCACTCATTTCA
GGGGAATTCAAGGGCAATGTGGGTCTGTTCAGTTTTTGCGTTTCAGGTTA
ATGGCCCGAATGAATATAATACGCTGAaggattttattttctgactaaga
tttaatttttttgagccACAAATTACAGATTTTGCATTCGATACAGCgct
ttcaaatttttccatgATATGTAGTCGACGAAAAGGCCTTCACTCTTATT
TACTTAGGCGTCTTCAGTAATTTTGGTTTTCAACTACTCTTAAATAAAGC
TCAGCGTGAGtgtattttatgaaattgaagGTCTTTGCTTTCCGCTCTCA
CAATTAGTACTAGACTTATTCATGGTTGCCTTTCTTCATTTCGATATCAT
AtccttttcttttcaaagtatTTTAGAATTCTCTTTTGttctcttttgtt
ttcattttatggCTCAAAATTTAAACCATGTAGAAGTTAACTTAACCTCT
CTTATTATATTAAGCGAAGGTGAACTTCGACTCTCATTTTTGATTTCGGT
GAGCGAAATACACTTTTTAGGACCCCTGGATTTGCATTATTTCGTTCGGG
ACTCTCTTAGTTACACCATGGGTGTTTGTTAGATAAAGTATCTCAGAACA
CCATAGCATAAACTAAATTGagtattttgaataaatttaaaattcagttt
GAGAGCGAATCAATTCAGTTCTCCGAGCCGACTTTGGTCTTTCATTTTGC
AATAGTTATTCTATCTTTCATGTTTTACTTTGCTGATAATGGCGATGGAT
GTTATTTTTCTTGTAGCCTTTGCTAAGATAAGAATCTGACGAACATGGCT
TCCATCAGTTCAAATCATCTCTTCGTAAAAACTCTCTTCAAAACATCGCT
CAACTAAtcaatcaatttttcgattGTCTTTTTTTAGCTGATGAGTCATT
TGATTTGCAAATAGTCAATTCAAGAGAAGATGGCGGCTCATTTAACTGCA
GGCACCAAACTCAAATTTGGTAAGGTTCCGTTCTTTTGGACTACTTTTTT
AGTCAACTTTCAACAGATTTAAGTTTGACTTTCCTTTTCATTCGGCGCAA
AGCTTTTTGATCACACTGGGAGATCCTTTTTGGAAAGGAAATGATGATAA
TAAACCTTTAGTTGTTGACAAGAGAAAATCTTCCATTGGAATGCTCTTAG
TCATTTGTTTTGTTGTTCAGGGGATTTTCCCATCCTAACTAGGTGGGAAA
TTTCGGTCACGAAATTCATCACTTCAAGATGGCTCCCCCTTGTTGGTTTG
GTAAGGTGAAGCAGGATCGTGATCACATCAAAAAAGCATTTGCTCACTAA
TTCTCATCTACCCATTTCTTTCTCTTCAACTTGTTGTTTTGATGTATTTG
AGAAGCTTTTGATGTTTGGTTACACGAAATATGTTCACAGCTTTCTTTTG
AGGACCTTCTGCTACTTTCCGCGATTGTTCTCTTAACatgtatttttatt
gttttgttattttgctTCGTTACAATAAGGGTATCttctttgcaaaatat
ttttcatggtttCTCTCAGTTTTTTCGTCCGCGCGTTTGGTTTAGGAAGA
AAAGTTGTTTATTCGGCTGTTTTGAATGAGTTGGTGAAAGGAAGATAGTA
CTGCGATAAAGTGAAAGTCAAGCGAAACCTCATGACAAAACGAGCCGTCC
TTCACTGAAGAAAGcggaaatttgaagaaaaaaatgcttttcttcAGAAA
TGGTGAGATATACATCAAATTCTTTTCAGTCTTCTGAGGTCTTCCCTGTT
GGAATGTGAGCCAAAAGGAAAAAGGAGGACCTTATCAAATATCCTTGTTT
CATAACTTTTCATTATTCTTGTTATAATTTGAACGTAAAGAAGGATGAGT
TCCCTTCTCAACTTTCTTCATCATTGGAACATCGCAAGGCGGACTTCCGA
TCGGCATCGGGTGGCTTTACGAAGACGTCATTCCGTCGTTTATAGCGAAG
ATGGTACTGCTCTTCACAATTGTAAGTGAAAACGTGAGAAAAATATTCGG
CTTTTCGTCCTTGTTACGCCTCTCTTTCTTTCAACTTTGATGTTTTTCTC
TAAATGTttataaattttcagtttgtcCAGATgaacttttgattgaaata
gACCAACCACTGTTTGCGAGAAAATGAACGTCTTCTGGAGGACTGACCTC
CCAACTCCTGCCGTTCGACGAATAAAAACAGGAACATCGTGCGTTATTGT
ATTTCGATATAGAATTGTCCAATTAATTTGGAATATAAAAACTGTCGAGG
AAAGAGGCCTGAGTTGCTATGCAACCTTCGATTTCCACCTGCCGTATGAA
CAATCGATGAGGGTTTTTCGACAAACATTTCGTGTTTCTCTTCACTGGAG
ATACAGTGAGAAAAGTGTAGACTACATTGTCTTTCTGCTTTTCTCTTACC
ACCAACATGTGGTTGGCTCATCCGACGCGCAAAAAACTCTACTCGTTGAA
TGGTAAGGCTCTTTGGTTTAATGAGCTGTTTACATGATTGGGTTTGATCC
ATCGCTTCGTTTCTTTGTTTGTTCGTTGTGCTTTTCTTGCAGATCTTCTT
AATAATCTGGTCATTTGTGGCAAGCTTTTTTCGCTATTAGTGGAGTTGGA
TTGGTAGAGATTTTTTGAACAGTCTTTTATAATGGTGGATCGAAATAAGA
GAAACAGCTTCGATGCCAATTCTTCCATCTCTAAGAAAGTTTCAAAAGTG
AAAGTGTCATAATTAGTCACAAAAATCCTTCATTTCTTTTTCGGTTTAAC
TTTCGAAAGATATAAGGCCTTAAAACGGTGAGTGAGTGATAATAACCCAG
GAATAAAATCGTACCACTTTGGAACCGTTTCCAAAAAGTTTTCGATAAAG
CTTTGTATAACTTTATCATAATTTTAACAGTCACTTTTAATTGACACCTT
ATCTACTTTTGGTCTTTTTTGACATTGGCTCTTTTTGCAAAATGTGTTGT
TTGTTTGAATTGAACACGAAGGGTGCTATCATTCCCCTTGGAAGATGGCT
TTTTTTGTTAACCAAATGAATGATGGGAGcaaaaagataatattttttct
tgtcTTGTAAAATAACAGAATATTATGGGATAATATCTCGTTCAAATTAC
AATTAAAACACTCCAACATTTATTTCTACTCTTTTCACACTTGGTTGATa
gggaaaatatattttattgaaGATAGGATGAAGTATTCCTCTCtcttttc
tctcttcttttctCATCACGTGATACGAGGAAAAGATATTTTATACTATC
CAACGAACACAGGCTCTCTACCTCCCCCCGCCAATTGGGAGGCTCacttc
gaatgtttttttttacctaTGTCCATATCACCAAAACAGTGAATGGCAGT
AGACCAAAGGGGCGCAAGATTTTTTGATATCataaatagataattacagt
gccATAAAACCAGccctcctacacaaattttgcgtccATCTTGTCTACGC
TAATGAACggggtttatttgattattgcTTTCAATTGGTTGTTTTTCGAT
CTCATTTTGCCTGCTTAATCTAAAGTGCCTATCATCACTAAATTTTGCTT
ATCGTTTGCCATTTTCTGGCAGTGCCTTGGATATTTCTTTCACTCTTCAA
CGGCCTAAACTGAAGTATTGCAGTGGTTTAATAAATTAGTTATACCATCT
ATCTATGCAATTACTAACCATAACCCTTCCTACCCAAACAACGACAacat
tttccttatttttcttgACACCCATCCTGGCTtgaaaggcggacacttct
gattagcggacaaaatattttttcccggccgTTTTCTAGTCAAATCCTTA
TTAAAAAGTctccaaaaggcggacactcaattagcggacacctCCATTTA
GCGGACAAAACTTTTTGCACAGAATGgtcaaaaacttgttttttccctcc
aattagcggacaccgaGGAAAACATAGTTTCAGACATTCAGATACAAGTA
ATAAATCATTTTAAACCATTTATTTCAAGCATTTTATTTCTTCCAAATTT
TGTTTACAAAGATTCAGTTTTTCCATTACCCAGTTGACAAGCGTTCCTGG
ACCAGTAAAACAGTAAATGACTGGCACTTCAAGTCCATAGCCACCTCCCC
TGTTCactattttgttatttttagtatttttagactttttttgaacgatt
gaaaaaaagtattttgttgTGTTTAAATAACTTTTCTCGAGTCTTTTCAT
GTTCCTATATCTTTAGGGAAAACCATAATTTCATTTTTGCGACCCCCTAG
TACGGTTTAATTTCGAAATTCGTGCCTGAAACTCAAAACCCTCCAAAAGG
TGgacacctctaattagcggacactaaacCGATTCCCCGATGGtatccgc
taattagaggttccactgtatcaACTTTTACTCGATTTtatgtttgaaaa
atgatttattttgctTTCAGGCTACCCAAAATCTCGCCAGCAACACGATG
CGACCATCGATAAGTTAAAAGCAGAAACAGAAACGCCCATCAAGCCTTCg
ctcaaaattttgttgatcAGAGGCTTCATCATGGTTGTCTACCTGTTGCT
AGGTGCTCTCGTCTTTCGTGCTCTGGAACACGAGGACGAGGACCCTAATG
CTAGAGATACACTAGCCTTTGAGCGCAAACAATTGCAACTAGAGTTCAAT
ATCAGTGATGTGAGGCTGAAACGGTTTGAAGATCTGGTTCGAAAAAGGAG
ACAAGAACCAAAAGATTGGGATTATTACCAATCACTGTATTTTGCGTCCA
CTGTCACTACAACTATCGGTTTG Coding sequence (CDS) from alignment at sc0001431:14954..21126+ >TCONS_00036248 ID=TCONS_00036248|Name=TCONS_00036248|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at sc0001431:14954..21126+ (Clytia hemisphaerica)
ATGGCGGCTCATTTAACTGCAGGCACCAAACTCAAATTTGGCTACCCAAA
ATCTCGCCAGCAACACGATGCGACCATCGATAAGTTAAAAGCAGAAACAG
AAACGCCCATCAAGCCTTCgctcaaaattttgttgatcAGAGGCTTCATC
ATGGTTGTCTACCTGTTGCTAGGTGCTCTCGTCTTTCGTGCTCTGGAACA
CGAGGACGAGGACCCTAATGCTAGAGATACACTAGCCTTTGAGCGCAAAC
AATTGCAACTAGAGTTCAATATCAGTGATGTGAGGCTGAAACGGTTTGAA
GATCTGGTTCGAAAAAGGAGACAAGAACCAAAAGATTGGGATTATTACCA
ATCACTGTATTTTGCGTCCACTGTCACTACAACTATCGGTTTGATGGCGG
CTCATTTAACTGCAGGCACCAAACTCAAATTTGGCTACCCAAAATCTCGC
CAGCAACACGATGCGACCATCGATAAGTTAAAAGCAGAAACAGAAACGCC
CATCAAGCCTTCgctcaaaattttgttgatcAGAGGCTTCATCATGGTTG
TCTACCTGTTGCTAGGTGCTCTCGTCTTTCGTGCTCTGGAACACGAGGAC
GAGGACCCTAATGCTAGAGATACACTAGCCTTTGAGCGCAAACAATTGCA
ACTAGAGTTCAATATCAGTGATGTGAGGCTGAAACGGTTTGAAGATCTGG
TTCGAAAAAGGAGACAAGAACCAAAAGATTGGGATTATTACCAATCACTG
TATTTTGCGTCCACTGTCACTACAACTATCGGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00036248-exon-sc0001431-1491911889:14954..15341 | TCONS_00036248-exon-sc0001431-1491911889:14954..15341 | Clytia hemisphaerica | exon |
| TCONS_00036248-exon-sc0001431-1510915933:14954..15341 | TCONS_00036248-exon-sc0001431-1510915933:14954..15341 | Clytia hemisphaerica | exon |
| TCONS_00036248-exon-sc0001431-1575043694:14954..15341 | TCONS_00036248-exon-sc0001431-1575043694:14954..15341 | Clytia hemisphaerica | exon |
| TCONS_00036248-exon-sc0001431-1491911889:17241..17322 | TCONS_00036248-exon-sc0001431-1491911889:17241..17322 | Clytia hemisphaerica | exon |
| TCONS_00036248-exon-sc0001431-1510915933:17241..17322 | TCONS_00036248-exon-sc0001431-1510915933:17241..17322 | Clytia hemisphaerica | exon |
| TCONS_00036248-exon-sc0001431-1575043694:17241..17322 | TCONS_00036248-exon-sc0001431-1575043694:17241..17322 | Clytia hemisphaerica | exon |
| TCONS_00036248-exon-sc0001431-1491911889:20774..21126 | TCONS_00036248-exon-sc0001431-1491911889:20774..21126 | Clytia hemisphaerica | exon |
| TCONS_00036248-exon-sc0001431-1510915933:20774..21126 | TCONS_00036248-exon-sc0001431-1510915933:20774..21126 | Clytia hemisphaerica | exon |
| TCONS_00036248-exon-sc0001431-1575043694:20774..21126 | TCONS_00036248-exon-sc0001431-1575043694:20774..21126 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001431 | supercontig | sc0001431:14954..21126 + |
Blast
The following BLAST results are available for this feature:
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