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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036247 ID=TCONS_00036247|Name=TCONS_00036247|organism=Clytia hemisphaerica|type=transcript|length=1180bp
aaatgaaaagaaatgaaaCTTACTTGGATGAAAAGAAGGAAAAGGTCAAG
ATGTCATCTCTTCGACAACTTATCAAAAGTACTATCCTTGCTTTATTCAA
TTTCTTTATCCTCTTTAGTCTCGTTCCCTTTCTGTGATTTTCAATGCAGC
TTGTGAAGAAGTTTTCCTTTCTTGAGGTGATAACTATCGGTAGTATATTA
ATGGCCAATAAAAATTCCTCTTTCCCTTGGGTTCTGTTCTCTTTCTTTCA
GGTGGCAGCTGTATTAGTGGAAGTAATACTCTAATCTTACTTTCCATgat
aacaaaaatgaaaaggggTGCAACAACACGCCATGTTAAAAGCTTTCACT
ACTTCTCACATAAAGAAGAGCAGATTCTGTGATTCCAGCTGATGAGTCAT
TTGATTTGCAAATAGTCAATTCAAGAGAAGATGGCGGCTCATTTAACTGC
AGGCACCAAACTCAAATTTGGTAAGGTTCCGTTCTTTTGGACTACTTTTT
TAGTCAACTTTCAACAGATTTAAGTTTGACTTTCCTTTTCATTCGGCGCA
AAGCTTTTTGATCACACTGGGAGATCCTTTTTGGAAAGGAAATGATGATA
ATAAACCTTTAGTTGTTGACAAGAGAAAATCTTCCATTGGAATGCTCTTA
GTCATTTGTTTTGTTGTTCAGGGGATTTTCCCATCCTAACTAGGTGGGAA
ATTTCGGTCACGAAATTCATCACTTCAAGATGGCTCCCCCTTGTTGGTTT
GGTAAGGTGAAGCAGGATCGTGATCACATCAAAAAAGCATTTGCTCACTA
ATTCTCATCTACCCATTTCTTTCTCTTCAACTTGTTGTTTTGATGTATTT
GAGAAGCTTTTGATGTTTGGTTACACGAAATATGTTCACAGCTTTCTTTT
GAGGACCTTCTGCTACTTTCCGCGATTGTTCTCTTAACatgtatttttat
tgttttgttattttgctTCGTTACAATAAGGGTATCttctttgcaaaata
tttttcatggtttCTCTCAGTTTTTTCGTCCGCGCGTTTGGTTTAGGAAG
AAAAGTTGTTTATTCGGCTGTTTTGAATGAGTTGGTGAAAGGAAGATAGT
ACTGCGATAAAGTGAAAGTCAAGCGAAACCTCATGACAAAACGAGCCGTC
CTTCACTGAAGAAAGcggaaatttgaagaa Run BLAST on NCBI transcript from alignment at sc0001431:14954..18032+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036247 ID=TCONS_00036247|Name=TCONS_00036247|organism=Clytia hemisphaerica|type=transcript|length=3079bp|location=Sequence derived from alignment at sc0001431:14954..18032+ (Clytia hemisphaerica)
aaatgaaaagaaatgaaaCTTACTTGGATGAAAAGAAGGAAAAGGTCAAG
ATGTCATCTCTTCGACAACTTATCAAAAGTACTATCCTTGCTTTATTCAA
TTTCTTTATCCTCTTTAGTCTCGTTCCCTTTCTGTGATTTTCAATGCAGC
TTGTGAAGAAGTTTTCCTTTCTTGAGGTGATAACTATCGGTAGTATATTA
ATGGCCAATAAAAATTCCTCTTTCCCTTGGGTTCTGTTCTCTTTCTTTCA
GGTGGCAGCTGTATTAGTGGAAGTAATACTCTAATCTTACTTTCCATgat
aacaaaaatgaaaaggggTGCAACAACACGCCATGTTAAAAGCTTTCACT
ACTTCTCACATAAAGAAGAGCAGATTCTGTGATTCCAGGTAAGGTCAGTT
TGTTTATTTACACCGGTGGGAGTAAGGAATAGCCAATAGtcttttaaaat
tgcattttttgtgCCTCCCTTCCCAGTGTTAAACGATGGTTAATATATTA
GAATTTagtttattcatgatatgcaccactggagagtcattctgagaact
ttcaaaattttccacccgatacgtcacttaaacaatagaaaaagtgacgt
gtTGGgtgcactgacctttatatatccctggaccaagcaatatccgccat
ctttgattggagtatttttggaattggtacccgagaagaagccattgcaa
tgttaaaaattaacgtctaacgccgctatatcatcaaaagaatttgagaa
aaagtagacctagcgctctcgatgcatttacaccgatatcgagtagtgcc
gccattagggtacgacttttcaaaaaactccaatcaaaaattttgcttag
CTGGGATcgagaagcttggtccagggtatataaaggtcaaaaacagaaaa
gttgcatctTATTTATGGTCAtgtgatatgcaccactgcaatgacttcac
gactTTTTTCGACTTTTATAGAGTTGTTATACTTATTTTCGTCTTCCAGG
CTAGCGCAAATCAAGACGTTCTCTTACAAAAACGTGTAGGTTGGTTCCAA
GCTAAATCTATTTCACAGAAAGGATTCGCGATAAACGACTTGCAATCGAA
ATATGTTTTGAACGATACTTCTTCGTAATGAAATAAGATTCGTTTTTATG
TTGCTTCCTGGATTAAGTTCTCCCAAAACTGTTGTTTTTAGTATCCTAGA
AGTATATCTTTCTTTTAGTAAAAGAAGACCTCGTTTGAAATAGGTTATTT
AAGAAGAGAGATAAATCTGTTTAATTTTAAGTGAACAGTGAGCGATGCTT
ATCGCAAGCCTAttcctatttttttattttcgttggTCAGAAAGAGATAG
AGTTCATACCTGTTTGATGAGAATGGTGGTGAGTTCCCTCACTCATTTCA
GGGGAATTCAAGGGCAATGTGGGTCTGTTCAGTTTTTGCGTTTCAGGTTA
ATGGCCCGAATGAATATAATACGCTGAaggattttattttctgactaaga
tttaatttttttgagccACAAATTACAGATTTTGCATTCGATACAGCgct
ttcaaatttttccatgATATGTAGTCGACGAAAAGGCCTTCACTCTTATT
TACTTAGGCGTCTTCAGTAATTTTGGTTTTCAACTACTCTTAAATAAAGC
TCAGCGTGAGtgtattttatgaaattgaagGTCTTTGCTTTCCGCTCTCA
CAATTAGTACTAGACTTATTCATGGTTGCCTTTCTTCATTTCGATATCAT
AtccttttcttttcaaagtatTTTAGAATTCTCTTTTGttctcttttgtt
ttcattttatggCTCAAAATTTAAACCATGTAGAAGTTAACTTAACCTCT
CTTATTATATTAAGCGAAGGTGAACTTCGACTCTCATTTTTGATTTCGGT
GAGCGAAATACACTTTTTAGGACCCCTGGATTTGCATTATTTCGTTCGGG
ACTCTCTTAGTTACACCATGGGTGTTTGTTAGATAAAGTATCTCAGAACA
CCATAGCATAAACTAAATTGagtattttgaataaatttaaaattcagttt
GAGAGCGAATCAATTCAGTTCTCCGAGCCGACTTTGGTCTTTCATTTTGC
AATAGTTATTCTATCTTTCATGTTTTACTTTGCTGATAATGGCGATGGAT
GTTATTTTTCTTGTAGCCTTTGCTAAGATAAGAATCTGACGAACATGGCT
TCCATCAGTTCAAATCATCTCTTCGTAAAAACTCTCTTCAAAACATCGCT
CAACTAAtcaatcaatttttcgattGTCTTTTTTTAGCTGATGAGTCATT
TGATTTGCAAATAGTCAATTCAAGAGAAGATGGCGGCTCATTTAACTGCA
GGCACCAAACTCAAATTTGGTAAGGTTCCGTTCTTTTGGACTACTTTTTT
AGTCAACTTTCAACAGATTTAAGTTTGACTTTCCTTTTCATTCGGCGCAA
AGCTTTTTGATCACACTGGGAGATCCTTTTTGGAAAGGAAATGATGATAA
TAAACCTTTAGTTGTTGACAAGAGAAAATCTTCCATTGGAATGCTCTTAG
TCATTTGTTTTGTTGTTCAGGGGATTTTCCCATCCTAACTAGGTGGGAAA
TTTCGGTCACGAAATTCATCACTTCAAGATGGCTCCCCCTTGTTGGTTTG
GTAAGGTGAAGCAGGATCGTGATCACATCAAAAAAGCATTTGCTCACTAA
TTCTCATCTACCCATTTCTTTCTCTTCAACTTGTTGTTTTGATGTATTTG
AGAAGCTTTTGATGTTTGGTTACACGAAATATGTTCACAGCTTTCTTTTG
AGGACCTTCTGCTACTTTCCGCGATTGTTCTCTTAACatgtatttttatt
gttttgttattttgctTCGTTACAATAAGGGTATCttctttgcaaaatat
ttttcatggtttCTCTCAGTTTTTTCGTCCGCGCGTTTGGTTTAGGAAGA
AAAGTTGTTTATTCGGCTGTTTTGAATGAGTTGGTGAAAGGAAGATAGTA
CTGCGATAAAGTGAAAGTCAAGCGAAACCTCATGACAAAACGAGCCGTCC
TTCACTGAAGAAAGcggaaatttgaagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036247-exon-sc0001431-1491911889:14954..15341 | TCONS_00036247-exon-sc0001431-1491911889:14954..15341 | Clytia hemisphaerica | exon |
| TCONS_00036247-exon-sc0001431-1510915933:14954..15341 | TCONS_00036247-exon-sc0001431-1510915933:14954..15341 | Clytia hemisphaerica | exon |
| TCONS_00036247-exon-sc0001431-1575043694:14954..15341 | TCONS_00036247-exon-sc0001431-1575043694:14954..15341 | Clytia hemisphaerica | exon |
| TCONS_00036247-exon-sc0001431-1491911889:17241..18032 | TCONS_00036247-exon-sc0001431-1491911889:17241..18032 | Clytia hemisphaerica | exon |
| TCONS_00036247-exon-sc0001431-1510915933:17241..18032 | TCONS_00036247-exon-sc0001431-1510915933:17241..18032 | Clytia hemisphaerica | exon |
| TCONS_00036247-exon-sc0001431-1575043694:17241..18032 | TCONS_00036247-exon-sc0001431-1575043694:17241..18032 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001431 | supercontig | sc0001431:14954..18032 + |
Blast
The following BLAST results are available for this feature:
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