TCONS_00036245 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036245
Unique NameTCONS_00036245
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036245 ID=TCONS_00036245|Name=TCONS_00036245|organism=Clytia hemisphaerica|type=transcript|length=448bp
GGGACGTTCAAATTTTTATATTCTCTATATCCTTTATTCCAGGATATAAA
TTTGTGTCGTGAGAATCCCTATTGTGTTGTGGCTTCATCAACCTGCATTC
GATTGGTGGATGAAATTTCTGATAATGatgaaattgttttgacatAGCTG
ATGGATATGGTTTTCTCCGTAGATGCAATTATGCAGTTACTTGCTTGGTG
ATTGTTGCGAACCATTGGTGTATTTATAAGAGTATTCAATGCAATCGTTG
AGGTATGGTATGAAGATGGATGGATTATCTAGAAGTGATTTCTTTGGTTG
AATATAGCAGTGTATTTATCGATTTGAAAGATGACCTCTTTTAGCCCAGT
CATCAACCGTGGCCAATGATGCTTGATCTATCTAAATCGTCATTTGAAGA
GCGATTGTTAAATGAAGTTGTCTCGATATCAATTCTGTAATATTGGTT
Run BLAST on NCBI

transcript from alignment at sc0001429:30172..30619

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036245 ID=TCONS_00036245|Name=TCONS_00036245|organism=Clytia hemisphaerica|type=transcript|length=448bp|location=Sequence derived from alignment at sc0001429:30172..30619 (Clytia hemisphaerica)
AACCAATATTACAGAATTGATATCGAGACAACTTCATTTAACAATCGCTC
TTCAAATGACGATTTAGATAGATCAAGCATCATTGGCCACGGTTGATGAC
TGGGCTAAAAGAGGTCATCTTTCAAATCGATAAATACACTGCTATATTCA
ACCAAAGAAATCACTTCTAGATAATCCATCCATCTTCATACCATACCTCA
ACGATTGCATTGAATACTCTTATAAATACACCAATGGTTCGCAACAATCA
CCAAGCAAGTAACTGCATAATTGCATCTACGGAGAAAACCATATCCATCA
GCTatgtcaaaacaatttcatCATTATCAGAAATTTCATCCACCAATCGA
ATGCAGGTTGATGAAGCCACAACACAATAGGGATTCTCACGACACAAATT
TATATCCTGGAATAAAGGATATAGAGAATATAAAAATTTGAACGTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021317XLOC_021317Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036245-exon-sc0001429-1491911889:30172..30619TCONS_00036245-exon-sc0001429-1491911889:30172..30619Clytia hemisphaericaexon
TCONS_00036245-exon-sc0001429-1510915933:30172..30619TCONS_00036245-exon-sc0001429-1510915933:30172..30619Clytia hemisphaericaexon
TCONS_00036245-exon-sc0001429-1575043694:30172..30619TCONS_00036245-exon-sc0001429-1575043694:30172..30619Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001429supercontigsc0001429:30172..30619 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.0748	10.0803	4.62307	2.67102	12.5862	8.53818	8.08068	6.9292	5.2501	9.56503	12.3714	6.40135	8.11635	7.39653	9.28581	12.7686	5.39758	8.64621	5.12847	7.45306	8.06504	9.49754	12.566	13.6943	12.1213	10.4362	5.42388	4.17314	9.90188	10.7308
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036245 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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