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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036244 ID=TCONS_00036244|Name=TCONS_00036244|organism=Clytia hemisphaerica|type=transcript|length=2032bp
TCATCTAGTAGCCGTTTAGACCTCAATATTCCATTTTGGCCAAATACCCT
TGACAGacaaaactcgaaaaattattttcttcgaAATTCTGTATATGAAT
TTCCtggtcaaaaaaagtttttggggTGGAAGTTCTGTCTGTTAAGGGAT
CATAACAAACGTTACTTGGCTGAATAGTTCGGACGGTATTTTGGGAATTT
TCTTCGTGAATCTTCCTCCGAAATCTTAAGATACAGAAACTTTAAGGAAG
GGTTTGGTTCTTGATGATTTTGTGATGGGACCGGGGAAAGGATGTACAAA
TTGAATACAAATCCATTCGATGGAATTTTTCACCAACGTTTGAACTTTCT
CTGTGACCATTTACTTTATGCACAGGTGTTTATTTCCTTCATCAAACTTC
ATGTATCGCTCAAAATGGTATTACCTAAAAGTTGGCTCTCTCCATTATCG
CGAAAAAGGCGTTTCATCTAATAGGTTGTACAGAGCACTTGGCTTCCTAA
TTTAAGCGATTAATCACGAAATGCACGAAAGCATTCATGTCTGTTAGCGT
CCTTTGCTTTCCCCTCcttcagatttttgaaaacttttttttgaaacccT
TCCCCTTTTGGGAATTGTTGAAGTCAATGAACCCAAATATCAACAATTTA
AAAACCGTTTATCGAATTATATTTTGCCGAgtctttttatatctttttca
tATATTTCCCCAGAGATCTTATATTTTCATAtggttttttcaaaaacatt
gttTAATGGACTCTCACTAATTCGAGCTTTTATAATTCAAATACTGCTTA
GTTTAGCTCCCGTTCGTAAATCTTCATAATTCGCACCTCTTTGCAGACTA
CTATTCAAGTTCGAATTAGTGAGAATTTGTTTTGGTGGATAGAACTATGG
CCGATTTTTACAATtccaatcaaaaattttcctaCTCCCGGTCAGGTACC
taataaatgggggggggggtcggaatAAGCGGATGGATGGAGAAATTCTT
AAAAGTTAATGTTCCggtttgaaaacttttgaaaaggagccctatacagc
agaattaggacaaaggAGGGAACTCTCAAAAACATtctcccaaaaattaa
taagcggggaaaggggtttggaataagaatgtcctgagtgggaaactttc
aaaaaattaattagtgggGGGACACATATTAATTAATAGGTACCCGGGAA
GGATTAGCTGCACATAACTTTGTTTCAAGTCAACGTTCATCTTTACGTTT
TATGGACATCATGGAcgctagatgaacgttgaaacaacgttgtggtGGCA
GGGTTATcaatggaaaaattttcaaaaaaacaaaaacttttcaagCTCCT
TTTgtccttaaaaaaagttttatggtAGAAGATCATTccactaaatttaa
aaaatcatttctttcGGAGCCCACATTGACCTTCCCTGTAATTAACGCTT
AAAACCGCTGCTCTGTACAACTAAAgtgaactctcgctaattcgaacaat
ctttatcattcaaactTCTCCTCAGTTACGTGGAAAAACCTTCGTGAAAT
GAGTTCTCCAATTCAAATTTCTATGTACTTCAAATGAATTTTGTCCTCCT
TTCGagctcgaattagcgagagtcgacTGTACAATTCCCTAATTCATCAA
AAGTGCGCGTTGTTTGAACTGGATGGTGCTATCAATTCTTCGTCAGGGTG
TTATGTGCATAATATCAAATCACATTAGATGAAAAGTTTAGGCTTTCATG
CCATAGTGATTAGCCATCGcaaataaattcaacagtatTCAAAAATATAC
CCTTTCCAAAGAAAATTGACTACTTCAAAAACACTTCTAGACAGCAAATA
TTTTTGTGACTGAAATGCTATTACATGATTACTGTAAATCGCGTTCTCCT
TTTGTAATCATTACCAATTTGTCATTCGTATCCTTTTTGTCAAGTGATTT
TGTCTCCTCTTTTAATACCAAACCAAACATTAATATTTTCAGAGATTTTG
AGCTCAATTGAAGcaaacttattcaaaatttN Run BLAST on NCBI transcript from alignment at sc0001429:25974..28005 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036244 ID=TCONS_00036244|Name=TCONS_00036244|organism=Clytia hemisphaerica|type=transcript|length=2032bp|location=Sequence derived from alignment at sc0001429:25974..28005 (Clytia hemisphaerica)
NaaattttgaataagtttgCTTCAATTGAGCTCAAAATCTCTGAAAATAT
TAATGTTTGGTTTGGTATTAAAAGAGGAGACAAAATCACTTGACAAAAAG
GATACGAATGACAAATTGGTAATGATTACAAAAGGAGAACGCGATTTACA
GTAATCATGTAATAGCATTTCAGTCACAAAAATATTTGCTGTCTAGAAGT
GTTTTTGAAGTAGTCAATTTTCTTTGGAAAGGGTATATTTTTGAatactg
ttgaatttatttgCGATGGCTAATCACTATGGCATGAAAGCCTAAACTTT
TCATCTAATGTGATTTGATATTATGCACATAACACCCTGACGAAGAATTG
ATAGCACCATCCAGTTCAAACAACGCGCACTTTTGATGAATTAGGGAATT
GTACAgtcgactctcgctaattcgagctCGAAAGGAGGACAAAATTCATT
TGAAGTACATAGAAATTTGAATTGGAGAACTCATTTCACGAAGGTTTTTC
CACGTAACTGAGGAGAagtttgaatgataaagattgttcgaattagcgag
agttcacTTTAGTTGTACAGAGCAGCGGTTTTAAGCGTTAATTACAGGGA
AGGTCAATGTGGGCTCCgaaagaaatgattttttaaatttagtggAATGA
TCTTCTaccataaaactttttttaaggacAAAAGGAGcttgaaaagtttt
tgtttttttgaaaatttttccattgATAACCCTGCCaccacaacgttgtt
tcaacgttcatctagcgTCCATGATGTCCATAAAACGTAAAGATGAACGT
TGACTTGAAACAAAGTTATGTGCAGCTAATCCTTCCCGGGTACCTATTAA
TTAATATGTGTCCCcccactaattaattttttgaaagtttcccactcagg
acattcttattccaaacccctttccccgcttattaatttttgggagaATG
TTTTTGAGAGTTCCCTcctttgtcctaattctgctgtatagggctccttt
tcaaaagttttcaaaccGGAACATTAACTTTTAAGAATTTCTCCATCCAT
CCGCTTattccgacccccccccccatttattaGGTACCTGACCGGGAGta
ggaaaatttttgattggaATTGTAAAAATCGGCCATAGTTCTATCCACCA
AAACAAATTCTCACTAATTCGAACTTGAATAGTAGTCTGCAAAGAGGTGC
GAATTATGAAGATTTACGAACGGGAGCTAAACTAAGCAGTATTTGAATTA
TAAAAGCTCGAATTAGTGAGAGTCCATTAaacaatgtttttgaaaaaacc
aTATGAAAATATAAGATCTCTGGGGAAATATatgaaaaagatataaaaag
acTCGGCAAAATATAATTCGATAAACGGTTTTTAAATTGTTGATATTTGG
GTTCATTGACTTCAACAATTCCCAAAAGGGGAAgggtttcaaaaaaaagt
tttcaaaaatctgaagGAGGGGAAAGCAAAGGACGCTAACAGACATGAAT
GCTTTCGTGCATTTCGTGATTAATCGCTTAAATTAGGAAGCCAAGTGCTC
TGTACAACCTATTAGATGAAACGCCTTTTTCGCGATAATGGAGAGAGCCA
ACTTTTAGGTAATACCATTTTGAGCGATACATGAAGTTTGATGAAGGAAA
TAAACACCTGTGCATAAAGTAAATGGTCACAGAGAAAGTTCAAACGTTGG
TGAAAAATTCCATCGAATGGATTTGTATTCAATTTGTACATCCTTTCCCC
GGTCCCATCACAAAATCATCAAGAACCAAACCCTTCCTTAAAGTTTCTGT
ATCTTAAGATTTCGGAGGAAGATTCACGAAGAAAATTCCCAAAATACCGT
CCGAACTATTCAGCCAAGTAACGTTTGTTATGATCCCTTAACAGACAGAA
CTTCCAccccaaaaactttttttgaccaGGAAATTCATATACAGAATTtc
gaagaaaataatttttcgagttttgtCTGTCAAGGGTATTTGGCCAAAAT
GGAATATTGAGGTCTAAACGGCTACTAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036244-exon-sc0001429-1491911889:25974..28005 | TCONS_00036244-exon-sc0001429-1491911889:25974..28005 | Clytia hemisphaerica | exon |
| TCONS_00036244-exon-sc0001429-1510915933:25974..28005 | TCONS_00036244-exon-sc0001429-1510915933:25974..28005 | Clytia hemisphaerica | exon |
| TCONS_00036244-exon-sc0001429-1575043694:25974..28005 | TCONS_00036244-exon-sc0001429-1575043694:25974..28005 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001429 | supercontig | sc0001429:25974..28005 . |
Blast
The following BLAST results are available for this feature:
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