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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036243 ID=TCONS_00036243|Name=TCONS_00036243|organism=Clytia hemisphaerica|type=transcript|length=1709bp CGAGTGCttcagaaatttgaaaatgatgaatgaagaagaagaatttgaaa atattatagaCTTTGATGACGATCCTGACTTTGATGAAGAAGAACTCTTT ACTCTAGAATGCCACCCTGATCCTCACGATGAGACAACAGAAGTTGTGGT CCCAGATGATGTTAGGGAAATGTTAAATGAGGGAGTTGATGATGATGCTG AAAATGTCTTTGTTCTGGATGAGATCCCTACAGTGACTTTTGTCAGTGAT GAAACTGTCAACATCATTCCATCATCTTCAAAATCTGCAGCTGAAAAGCC GATCCTGATTTGCGAAAATTGCAGCaagaaatataaaatgaaatttcact ACAATAAACATATTTTAATATGCAAGCCCAAGTCAGCCAACGTATCAGAT AAATCGACAACCAAGCGCAAACCAAAACAGCCTCCTGCAAACTCAACTAA AAAGGCAGCCAAAACGATAACCTTTCCAGCTGTATTTAAAGCTCACGAAA AGAAGGATTATGTAAAGGATTCAACTGCACGTTTCCTTGGGTGTCTTAAA AGTTGTGCTGATGACCCATTCTTCAATTTAAAGTCTGCTTGCGAAACCCC TGGAAATATGACTGTAAAACTTGCTAAATCACTCCTGGAAAATGATGAAA GTTGCTTTGACGAAATAGCTAAGCAATTTAGCGAATGGCTGTTACCAGCA TTGAATCTCCCTGGTACGTCGGACGCAAGAGAGCATTGCTGCAAATTGTT TATCCAGGAAATGATTTCTTCTGAATCGAATCACcagatttggaaaactt ttttgacaaaaattggcATTAATTTGGTTGTGCACAAAAGACCAGTCAAC ATGCTTTTTTCCTTTGTTGCCACAAAGTTTTTTGAAGAAAGTTTGATTTG GAAGAATGCTGTTCTCATAAAGACAGGTATGAGAGTGGATTACACCAAAC TGAAAATGTCAGAACATGAAGAGAAAATTTTACGGTATGTCGCCGGTTAC ATTCCCTACTCCCTTAAACGTCAATATTGGTCTCGGCGCCATGAAAGTAC TGGTCTGATGATAACAGAGTTGGTATCATCCTGGATGGTGAATGAAGATC AAGAGCTGACCGAGCACAAGCCATTTTATGAATATACACTTTCATGGACA AACCGTATCAATCGTGGTGGGTTGATGATTGTCAATgaagttttttttgt atttgtaaAACGAATGGAAATGGTTGTGCGTGATGTGCTTAACAAAACAT TGATAAGAAATTATAAAGGTGAAGACCTTAGAGATTTGATTATgactaaa atgttaaaaaatgagTTGCTTGATAGGAGTTGGAGGGGTATTACCAGGAT CGTACACAATAAGGAGCTGGTTGATGTCATCAAGAAAGTTATTTTCCGTA AATGGATGACTATGCGCATTAAATCCTTTGTTAATGCTTGGATTCAAAGC ATCAAATGGAAAGCAAGCAAAGAAAAGCAAGCCAAGAAAGCTGCtaaaaa caataaagacaaCGACAAAGAAGACAAAAGTAAAACTAAAGCTAAGACAA ACATTGATAAAGTTTCAAGACAAGCAGAGCCAGGGCTCAGAAAAGCACTG TATAGCTCAAAGTAAACTTTTATGGAATTATACTTGAAATTCTCTTATtt aatattttagtaaaaataatCCTGTACAAGGatgttttcatatttttgat ggaaaaatc Run BLAST on NCBI protein sequence of TCONS_00036243-protein >TCONS_00036243-protein ID=TCONS_00036243-protein|Name=TCONS_00036243-protein|organism=Clytia hemisphaerica|type=polypeptide|length=537bp
ECFRNLKMMNEEEEFENIIDFDDDPDFDEEELFTLECHPDPHDETTEVVV PDDVREMLNEGVDDDAENVFVLDEIPTVTFVSDETVNIIPSSSKSAAEKP ILICENCSKKYKMKFHYNKHILICKPKSANVSDKSTTKRKPKQPPANSTK KAAKTITFPAVFKAHEKKDYVKDSTARFLGCLKSCADDPFFNLKSACETP GNMTVKLAKSLLENDESCFDEIAKQFSEWLLPALNLPGTSDAREHCCKLF IQEMISSESNHQIWKTFLTKIGINLVVHKRPVNMLFSFVATKFFEESLIW KNAVLIKTGMRVDYTKLKMSEHEEKILRYVAGYIPYSLKRQYWSRRHEST GLMITELVSSWMVNEDQELTEHKPFYEYTLSWTNRINRGGLMIVNEVFFV FVKRMEMVVRDVLNKTLIRNYKGEDLRDLIMTKMLKNELLDRSWRGITRI VHNKELVDVIKKVIFRKWMTMRIKSFVNAWIQSIKWKASKEKQAKKAAKN NKDNDKEDKSKTKAKTNIDKVSRQAEPGLRKALYSSK Run BLAST on NCBI transcript from alignment at sc0001429:47464..49979- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036243 ID=TCONS_00036243|Name=TCONS_00036243|organism=Clytia hemisphaerica|type=transcript|length=2516bp|location=Sequence derived from alignment at sc0001429:47464..49979- (Clytia hemisphaerica) CGAGTGCTTCAGAAATTTGAAAATGATGAATGAAGAAGAAGAATTTGAAA
ATATTATAGACTTTGATGACGATCCTGACTTTGATGAAGAAGAACTCTTT
ACTCTAGAATGCCACCCTGATCCTCACGATGAGACAACAGAAGTTGTGGT
CCCAGATGATGTTAGGGAAATGTTAAATGAGGGAGTTGATGATGATGCTG
AAAATGTCTTTGTTCTGGATGAGATCCCTACAGTGACTTTTGTCAGTGAT
GAAACTGTCAACATCATTCCATCATCTTCAAAATCTGCAGCTGAAAAGCC
GATCCTGATTTGCGAAAATTGCAGCAAGAAATATAAAATGAAATTTCACT
ACAATAAACATATTTTAATATGCAAGCCCAAGTCAGCCAACGTATCAGGT
AAGTTTTTCTCAAACATTCACAATTTGATACATCATTAGGGGTCCTCAGA
TATTTTTATCTAATAATTCATTCATCATTGCCTGTCCAAAATCTTTCAAA
ACCAAATAGCAATAGCCCAATACACGATATGATATCATCATTTATTACTT
CATAATATATTACATCATTTTAGTACAAAATAAGCCTTCAGTTTGTCCAC
TAACAGACTAACACTGTCAATCCAGCCATCTTTTACACTAGTCATAAAAC
ATTAATATTCCTTTTTTGTCAGGTTTTTTTTTTGATTTATATATGACTTT
AAATCTTAGATCAATCCTAGAAATTATTTTCAGCTTCTAGATATAAGGAT
ATAAAACAGATTAGAACACCCTTTCAGCCAGAAAAATGTTGTATATATGC
CTTGTGTGATAGATGAGTAGATGGATAGTCGTTTATGGAGATCCCACTAC
CATTTCGATTGATGTTTTGACATTTGTTCACTTCAGAGAAATGCCCTTGT
AACCATATTAAAAATCATCTTCTTTTTTCACATTCATAGATAAATCGACA
ACCAAGCGCAAACCAAAACAGCCTCCTGCAAACTCAACTAAAAAGGCAGC
CAAAACGATAACCTTTCCAGGTTTGTATATTCAAAATATTATGTATATTT
ATTCTACTTGCCTTGCATTTGATGCTTATAGGTTAACCTGTAACCTTTTA
CAAATCCCCATTTAGCTCGAGATGAGTGTTACAAGGAAGAGTTTGTAAAA
TTTGTGTTTATAGATCAAAATACAAATACATAGAAAACTATAGATTTCTC
ACCCCTTTGACAATAATTTAAACTTTTTCGATTAATAACTTCCATGGCAG
ATTTAATCTGTAAAAATTTTTATTCTTTCATTTCAGCTGTATTTAAAGCT
CACGAAAAGAAGGATTATGTAAAGGATTCAACTGCACGTTTCCTTGGGTG
TCTTAAAAGTTGTGCTGATGACCCATTCTTCAATTTAAAGTCTGCTTGCG
AAACCCCTGGAAATATGACTGTAAAACTTGCTAAATCACTCCTGGAAAAT
GATGAAAGTTGCTTTGACGAAATAGCTAAGCAATTTAGCGAATGGCTGTT
ACCAGCATTGAATCTCCCTGGTACGTCGGACGCAAGAGAGCATTGCTGCA
AATTGTTTATCCAGGAAATGATTTCTTCTGAATCGAATCACCAGATTTGG
AAAACTTTTTTGACAAAAATTGGCATTAATTTGGTTGTGCACAAAAGACC
AGTCAACATGCTTTTTTCCTTTGTTGCCACAAAGTTTTTTGAAGAAAGTT
TGATTTGGAAGAATGCTGTTCTCATAAAGACAGGTATGAGAGTGGATTAC
ACCAAACTGAAAATGTCAGAACATGAAGAGAAAATTTTACGGTATGTCGC
CGGTTACATTCCCTACTCCCTTAAACGTCAATATTGGTCTCGGCGCCATG
AAAGTACTGGTCTGATGATAACAGAGTTGGTATCATCCTGGATGGTGAAT
GAAGATCAAGAGCTGACCGAGCACAAGCCATTTTATGAATATACACTTTC
ATGGACAAACCGTATCAATCGTGGTGGGTTGATGATTGTCAATGAAGTTT
TTTTTGTATTTGTAAAACGAATGGAAATGGTTGTGCGTGATGTGCTTAAC
AAAACATTGATAAGAAATTATAAAGGTGAAGACCTTAGAGATTTGATTAT
GACTAAAATGTTAAAAAATGAGTTGCTTGATAGGAGTTGGAGGGGTATTA
CCAGGATCGTACACAATAAGGAGCTGGTTGATGTCATCAAGAAAGTTATT
TTCCGTAAATGGATGACTATGCGCATTAAATCCTTTGTTAATGCTTGGAT
TCAAAGCATCAAATGGAAAGCAAGCAAAGAAAAGCAAGCCAAGAAAGCTG
CTAAAAACAATAAAGACAACGACAAAGAAGACAAAAGTAAAACTAAAGCT
AAGACAAACATTGATAAAGTTTCAAGACAAGCAGAGCCAGGGCTCAGAAA
AGCACTGTATAGCTCAAAGTAAACTTTTATGGAATTATACTTGAAATTCT
CTTATTTAATATTTTAGTAAAAATAATCCTGTACAAGGATGTTTTCATAT
TTTTGATGGAAAAATC Coding sequence (CDS) from alignment at sc0001429:47464..49979- >TCONS_00036243 ID=TCONS_00036243|Name=TCONS_00036243|organism=Clytia hemisphaerica|type=CDS|length=4842bp|location=Sequence derived from alignment at sc0001429:47464..49979- (Clytia hemisphaerica) CTGTATTTAAAGCTCACGAAAAGAAGGATTATGTAAAGGATTCAACTGCA CGTTTCCTTGGGTGTCTTAAAAGTTGTGCTGATGACCCATTCTTCAATTT AAAGTCTGCTTGCGAAACCCCTGGAAATATGACTGTAAAACTTGCTAAAT CACTCCTGGAAAATGATGAAAGTTGCTTTGACGAAATAGCTAAGCAATTT AGCGAATGGCTGTTACCAGCATTGAATCTCCCTGGTACGTCGGACGCAAG AGAGCATTGCTGCAAATTGTTTATCCAGGAAATGATTTCTTCTGAATCGA ATCACCAGATTTGGAAAACTTTTTTGACAAAAATTGGCATTAATTTGGTT GTGCACAAAAGACCAGTCAACATGCTTTTTTCCTTTGTTGCCACAAAGTT TTTTGAAGAAAGTTTGATTTGGAAGAATGCTGTTCTCATAAAGACAGGTA TGAGAGTGGATTACACCAAACTGAAAATGTCAGAACATGAAGAGAAAATT TTACGGTATGTCGCCGGTTACATTCCCTACTCCCTTAAACGTCAATATTG GTCTCGGCGCCATGAAAGTACTGGTCTGATGATAACAGAGTTGGTATCAT CCTGGATGGTGAATGAAGATCAAGAGCTGACCGAGCACAAGCCATTTTAT GAATATACACTTTCATGGACAAACCGTATCAATCGTGGTGGGTTGATGAT TGTCAATGAAGTTTTTTTTGTATTTGTAAAACGAATGGAAATGGTTGTGC GTGATGTGCTTAACAAAACATTGATAAGAAATTATAAAGGTGAAGACCTT AGAGATTTGATTATGACTAAAATGTTAAAAAATGAGTTGCTTGATAGGAG TTGGAGGGGTATTACCAGGATCGTACACAATAAGGAGCTGGTTGATGTCA TCAAGAAAGTTATTTTCCGTAAATGGATGACTATGCGCATTAAATCCTTT GTTAATGCTTGGATTCAAAGCATCAAATGGAAAGCAAGCAAAGAAAAGCA AGCCAAGAAAGCTGCTAAAAACAATAAAGACAACGACAAAGAAGACAAAA GTAAAACTAAAGCTAAGACAAACATTGATAAAGTTTCAAGACAAGCAGAG CCAGGGCTCAGAAAAGCACTGTATAGCTCAAAGTAAATAAATCGACAACC AAGCGCAAACCAAAACAGCCTCCTGCAAACTCAACTAAAAAGGCAGCCAA AACGATAACCTTTCCAGGAGTGCTTCAGAAATTTGAAAATGATGAATGAA GAAGAAGAATTTGAAAATATTATAGACTTTGATGACGATCCTGACTTTGA TGAAGAAGAACTCTTTACTCTAGAATGCCACCCTGATCCTCACGATGAGA CAACAGAAGTTGTGGTCCCAGATGATGTTAGGGAAATGTTAAATGAGGGA GTTGATGATGATGCTGAAAATGTCTTTGTTCTGGATGAGATCCCTACAGT GACTTTTGTCAGTGATGAAACTGTCAACATCATTCCATCATCTTCAAAAT CTGCAGCTGAAAAGCCGATCCTGATTTGCGAAAATTGCAGCAAGAAATAT AAAATGAAATTTCACTACAATAAACATATTTTAATATGCAAGCCCAAGTC AGCCAACGTATCAGCTGTATTTAAAGCTCACGAAAAGAAGGATTATGTAA AGGATTCAACTGCACGTTTCCTTGGGTGTCTTAAAAGTTGTGCTGATGAC CCATTCTTCAATTTAAAGTCTGCTTGCGAAACCCCTGGAAATATGACTGT AAAACTTGCTAAATCACTCCTGGAAAATGATGAAAGTTGCTTTGACGAAA TAGCTAAGCAATTTAGCGAATGGCTGTTACCAGCATTGAATCTCCCTGGT ACGTCGGACGCAAGAGAGCATTGCTGCAAATTGTTTATCCAGGAAATGAT TTCTTCTGAATCGAATCACCAGATTTGGAAAACTTTTTTGACAAAAATTG GCATTAATTTGGTTGTGCACAAAAGACCAGTCAACATGCTTTTTTCCTTT GTTGCCACAAAGTTTTTTGAAGAAAGTTTGATTTGGAAGAATGCTGTTCT CATAAAGACAGGTATGAGAGTGGATTACACCAAACTGAAAATGTCAGAAC ATGAAGAGAAAATTTTACGGTATGTCGCCGGTTACATTCCCTACTCCCTT AAACGTCAATATTGGTCTCGGCGCCATGAAAGTACTGGTCTGATGATAAC AGAGTTGGTATCATCCTGGATGGTGAATGAAGATCAAGAGCTGACCGAGC ACAAGCCATTTTATGAATATACACTTTCATGGACAAACCGTATCAATCGT GGTGGGTTGATGATTGTCAATGAAGTTTTTTTTGTATTTGTAAAACGAAT GGAAATGGTTGTGCGTGATGTGCTTAACAAAACATTGATAAGAAATTATA AAGGTGAAGACCTTAGAGATTTGATTATGACTAAAATGTTAAAAAATGAG TTGCTTGATAGGAGTTGGAGGGGTATTACCAGGATCGTACACAATAAGGA GCTGGTTGATGTCATCAAGAAAGTTATTTTCCGTAAATGGATGACTATGC GCATTAAATCCTTTGTTAATGCTTGGATTCAAAGCATCAAATGGAAAGCA AGCAAAGAAAAGCAAGCCAAGAAAGCTGCTAAAAACAATAAAGACAACGA CAAAGAAGACAAAAGTAAAACTAAAGCTAAGACAAACATTGATAAAGTTT CAAGACAAGCAGAGCCAGGGCTCAGAAAAGCACTGTATAGCTCAAAGTAA ATAAATCGACAACCAAGCGCAAACCAAAACAGCCTCCTGCAAACTCAACT AAAAAGGCAGCCAAAACGATAACCTTTCCAGGAGTGCTTCAGAAATTTGA AAATGATGAATGAAGAAGAAGAATTTGAAAATATTATAGACTTTGATGAC GATCCTGACTTTGATGAAGAAGAACTCTTTACTCTAGAATGCCACCCTGA TCCTCACGATGAGACAACAGAAGTTGTGGTCCCAGATGATGTTAGGGAAA TGTTAAATGAGGGAGTTGATGATGATGCTGAAAATGTCTTTGTTCTGGAT GAGATCCCTACAGTGACTTTTGTCAGTGATGAAACTGTCAACATCATTCC ATCATCTTCAAAATCTGCAGCTGAAAAGCCGATCCTGATTTGCGAAAATT GCAGCAAGAAATATAAAATGAAATTTCACTACAATAAACATATTTTAATA TGCAAGCCCAAGTCAGCCAACGTATCAGCTGTATTTAAAGCTCACGAAAA GAAGGATTATGTAAAGGATTCAACTGCACGTTTCCTTGGGTGTCTTAAAA GTTGTGCTGATGACCCATTCTTCAATTTAAAGTCTGCTTGCGAAACCCCT GGAAATATGACTGTAAAACTTGCTAAATCACTCCTGGAAAATGATGAAAG TTGCTTTGACGAAATAGCTAAGCAATTTAGCGAATGGCTGTTACCAGCAT TGAATCTCCCTGGTACGTCGGACGCAAGAGAGCATTGCTGCAAATTGTTT ATCCAGGAAATGATTTCTTCTGAATCGAATCACCAGATTTGGAAAACTTT TTTGACAAAAATTGGCATTAATTTGGTTGTGCACAAAAGACCAGTCAACA TGCTTTTTTCCTTTGTTGCCACAAAGTTTTTTGAAGAAAGTTTGATTTGG AAGAATGCTGTTCTCATAAAGACAGGTATGAGAGTGGATTACACCAAACT GAAAATGTCAGAACATGAAGAGAAAATTTTACGGTATGTCGCCGGTTACA TTCCCTACTCCCTTAAACGTCAATATTGGTCTCGGCGCCATGAAAGTACT GGTCTGATGATAACAGAGTTGGTATCATCCTGGATGGTGAATGAAGATCA AGAGCTGACCGAGCACAAGCCATTTTATGAATATACACTTTCATGGACAA ACCGTATCAATCGTGGTGGGTTGATGATTGTCAATGAAGTTTTTTTTGTA TTTGTAAAACGAATGGAAATGGTTGTGCGTGATGTGCTTAACAAAACATT GATAAGAAATTATAAAGGTGAAGACCTTAGAGATTTGATTATGACTAAAA TGTTAAAAAATGAGTTGCTTGATAGGAGTTGGAGGGGTATTACCAGGATC GTACACAATAAGGAGCTGGTTGATGTCATCAAGAAAGTTATTTTCCGTAA ATGGATGACTATGCGCATTAAATCCTTTGTTAATGCTTGGATTCAAAGCA TCAAATGGAAAGCAAGCAAAGAAAAGCAAGCCAAGAAAGCTGCTAAAAAC AATAAAGACAACGACAAAGAAGACAAAAGTAAAACTAAAGCTAAGACAAA CATTGATAAAGTTTCAAGACAAGCAGAGCCAGGGCTCAGAAAAGCACTGT ATAGCTCAAAGTAAATAAATCGACAACCAAGCGCAAACCAAAACAGCCTC CTGCAAACTCAACTAAAAAGGCAGCCAAAACGATAACCTTTCCAGGAGTG CTTCAGAAATTTGAAAATGATGAATGAAGAAGAAGAATTTGAAAATATTA TAGACTTTGATGACGATCCTGACTTTGATGAAGAAGAACTCTTTACTCTA GAATGCCACCCTGATCCTCACGATGAGACAACAGAAGTTGTGGTCCCAGA TGATGTTAGGGAAATGTTAAATGAGGGAGTTGATGATGATGCTGAAAATG TCTTTGTTCTGGATGAGATCCCTACAGTGACTTTTGTCAGTGATGAAACT GTCAACATCATTCCATCATCTTCAAAATCTGCAGCTGAAAAGCCGATCCT GATTTGCGAAAATTGCAGCAAGAAATATAAAATGAAATTTCACTACAATA AACATATTTTAATATGCAAGCCCAAGTCAGCCAACGTATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00036243-exon-sc0001429-1575043694:49582..49979 | TCONS_00036243-exon-sc0001429-1575043694:49582..49979 | Clytia hemisphaerica | exon |
| TCONS_00036243-exon-sc0001429-1575043694:48960..49040 | TCONS_00036243-exon-sc0001429-1575043694:48960..49040 | Clytia hemisphaerica | exon |
| TCONS_00036243-exon-sc0001429-1575043694:47464..48693 | TCONS_00036243-exon-sc0001429-1575043694:47464..48693 | Clytia hemisphaerica | exon |
| TCONS_00036243-exon-sc0001429-1510915933:49582..49979 | TCONS_00036243-exon-sc0001429-1510915933:49582..49979 | Clytia hemisphaerica | exon |
| TCONS_00036243-exon-sc0001429-1510915933:48960..49040 | TCONS_00036243-exon-sc0001429-1510915933:48960..49040 | Clytia hemisphaerica | exon |
| TCONS_00036243-exon-sc0001429-1510915933:47464..48693 | TCONS_00036243-exon-sc0001429-1510915933:47464..48693 | Clytia hemisphaerica | exon |
| TCONS_00036243-exon-sc0001429-1491911889:49582..49979 | TCONS_00036243-exon-sc0001429-1491911889:49582..49979 | Clytia hemisphaerica | exon |
| TCONS_00036243-exon-sc0001429-1491911889:48960..49040 | TCONS_00036243-exon-sc0001429-1491911889:48960..49040 | Clytia hemisphaerica | exon |
| TCONS_00036243-exon-sc0001429-1491911889:47464..48693 | TCONS_00036243-exon-sc0001429-1491911889:47464..48693 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0001429 | supercontig | sc0001429:47464..49979 - |
Blast
The following BLAST results are available for this feature:
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