TCONS_00036237 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036237
Unique NameTCONS_00036237
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2029

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036237 ID=TCONS_00036237|Name=TCONS_00036237|organism=Clytia hemisphaerica|type=transcript|length=2029bp
GATACAGGAACATACAACTCAACTGAATTAGCCCAGTTGGTGAGATGAGA
CGTTGAAGCGATGAATGACACAGCAGATGGCCGCTCGTGAGAATAGCAGA
ATAGTGGATTGAAATCATTCGAAACATTCAAGTAAACAGCTGAAGCATAG
ATGAATTGAACTGAATGAGAGCATCTCTCTTGGCAAACTTGAATGAAGCA
TTCACCTCAAAAGACGCTTTacaataaagaagaaaatgaaatactGAATG
TGAGCTCGGCAACCACTTGcaaaaaaagcaacataaagATAATTTTGCGG
TTTATAGCGTAAAAATAAACTATGCTGTCCGTTAATTAAATGTCTTGAAT
TGAAATCACGGACACCGCTGTCATTAGAGGTAGACTTGCAGAAAGTCGCA
AAGGGATTATTTGTCATGGATACTTCCACATCGAGCGTTAAATTTGCGGA
CGAGTTCAAGTCGACCACAACAACATTCTACAAAAAGCGCCCTCCCACGC
CCACACGGAAGAAATTCGAATTGGGCGAACTCGATACAGAGAATTCGTCA
AGCAAATCATCCCGCCTTAACCCTGAAGTCGAACGCGAGGAGTCCGCCCT
CAAAGATGAGCTACTTCGAATCTTCGGTCGGGAGAAGGACGCGATGGAGT
CGCATTATTTGGCGAAAATACAGGAGCTTTTGCGGAGCTTCAAGAGCAAG
AAGTTAGAATGGGAAGAGATGGTGCGTGCAGAGAGAGAAGACTTGGAAAG
ACAATTCGAAAGCGAACGTAGTGAAATCAACCAAAATTTCGCGCAAGAGA
TCACCAAGATCAGCACGCGCTTTCAAGAAGAAAAACTCGATATTGACCGA
CGAAATGAAAACCGCTTACGTGACCGCGAGACCGAAATGGACCGCGAAAA
GCGTGATTTGTCGGATAATTGGAAATCGCAGATCGATGCCATGAGGAAGG
AATGTCAATGTAACTTCGATATGAAATTGGAAAGTGAGTTGAAAAAGGAG
AAGGAAAAACACAAGACAGAAATGGAGTTGCTGGGGAAGAAGTTCGAGCA
TGCGCAGTATGATTTGGAGAAATCAAACGAAAGAGAAGTGACAGAATTGG
AAAAGAAATATCAGAAATTGATTTTTGACATGGAGAAGAAACAGGATGAG
GAGAAGAACAAACTTGAGAAGGAATGGCAGCGGAAGCTTGAGAACTTGGA
GGACGCTTTACGCAAAGAAACCAACTATCGAAACGAAAGTGAGAAACTGG
CGGctcatgaaaaagaaaatctgaaaGCTATCAATGAGATGTTAAAGGAA
GAGATTGCCAGGATGAAGGATGAGTGTGAGCGCATGCGTAAACAACAACA
AGAAGTTCGAGTTATCGAGAAGCAAACTTCTTCCCAAACCTTCTCGACGC
GCGCTGATTTACCAGGTGGCTTGCGTGATGATTTCGACCGCATCGTGAAT
GAGTATAAGACAACACTTAAGGAGAGGTTTGCTGATGAGCGACAGACCAT
GGAGGAGAAAATGCAGATGGAGAGAGACAGGTTGAATGAGAAGTTAGCCC
GTGAGCGAGAAGAGATGGAAAAGAGGCTAAACGAAGAGAAGTTCCGTTTG
GAGAGAGATATGGATCGGAGTAGAGATGATATTGAGAAAGAAGTCGAGAG
AAGGTTGCGGTCGAAGCAACTATCCGACACATTGTTGGCGCAACAACAGA
GGTTTGACGAGGTCGCACGGAGActcgaagaagaagaaaagaatcgGTAT
GAGCGCCTCAAGGACACCGAATTCCGGCAGTTTGAATCAAAGATTGGCGA
TTTACAACGGGAAAATGAAGGtttaaaagccaaaatccaattACTGGAAG
ATAACAATAAAGTCTTAAAGAGCTTGAAAGAGGAAGGACAACAGGAGGTC
GAACGTCTTCGAAAAGCTGTGGAGGATTTAAAAACAGTCGTTGAAGCGAG
GCGGGAATCGGATCGCACACGTGCACAAACACCGTCCGAGTTCACTCCTT
TCTTGATGTCTATGATGCAACAGAACCAG
Run BLAST on NCBI

transcript from alignment at sc0001428:46702..51727-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036237 ID=TCONS_00036237|Name=TCONS_00036237|organism=Clytia hemisphaerica|type=transcript|length=5026bp|location=Sequence derived from alignment at sc0001428:46702..51727- (Clytia hemisphaerica)
GATACAGGAACATACAACTCAACTGAATTAGCCCAGGTAGGTAGTAATTG
GCATATTTACAATTTCCTGAAATATTATGCATTTTCGAACCAAAGAGAAT
ATAAAAAACAAATGGCCACCCTCCGTCAACAGAGTCTACTTTGCCCTTAT
CCGAGTGACGTCATAATCGCCCTCCCTTGCTGTGCCAGCATAATACATAT
GAGAAGTTCAAGTTGAGGCTGCTACTAGAAACTAAAAAGATAAAGATTTT
GCAGCTCTCTGTCCCTGCAATTATTGTTGAAGGTGATCCTTATTGCATAG
CTACATTACTATTGATTTTATCGGTAAAACTTTTCCCCGAAAATTATTAT
TCGAAGGTTACCCATTATTTAAGGCCAAACTTATATCTAACGACTGGAAT
GGTACGACATTGGAATGGTAAATATAGAGCATCACTTCTTGGTCGATCAA
GTTAATATTTTCCATTGCATTTGCAAGACCAGCAAACAGTTTTATAGTAT
ATGTGTGGGCATTAACCTTGCTATAAAAAATACGATCCAATGCATAGTCT
AAAGTTAAAGGCGAATCTCAGACACTCAGTCTCAGAAGTTTTTCTTCTGA
AGAAGAATGAGCGAAGGGCAAATCTCTATGCACGAACACAATATCGACAG
TAGTTTGGGCCCGGTGAGAATATCAAATCTAATGTATCTGAGATGATCGT
TCATGAAATGTTGAAAGTTTTTCTATAAGAGGGTGAGTCACACATTTTCT
CCCTTTAAAAAATCTCTGACGATGATAAATCGGTGTGAATAATTTACTAA
AAAGTACATCGATTTTTAAAGCAGAAATTTAGATTCGCATTAAGGTTTTG
TAAACTTTCTATTTATACCATAGTTGGTGAGATGAGACGTTGAAGCGATG
AATGACACAGCAGATGGCCGCTCGTGAGAATAGCAGAATAGTGGATTGAA
ATCATTCGAAACATTCAAGGTATGGAGGCATGATTTTGATTACATTTTAA
TCAGCTTTTTTTATAAGAAATCAAGAGTTTAATACCTTCACTCTATATAT
TGAAGTAATTCTTATGTTATTTTTCTAGTGAAATTAGATTGGTTAAAAAA
GGCAAAAGAGAACGACTTGAGACACTTTTGATTTCTCAGTTAGAGACATA
ACACAATTTTTTAATCAACTTTGTTCTTATAGTAAACAGCTGAAGCATAG
ATGAATTGAACTGAATGAGAGCATCTCTCTTGGCAAACTTGAATGAAGCA
TTCACCTCAAAAGACGCTTTACAATAAAGAAGAAAATGAAATACTGAATG
TGAGCTCGGCAACCACTTGCAAAAAAAGCAACATAAAGATAATTTTGCGG
TTTATAGCGTAAAAATAAACTATGCTGTCCGTTAATTAAATGTCTTGAAT
TGAAATCACGGACACCGCTGTCATTAGAGGTAGACTTGCAGGTAAGTGAC
TTCTCAATCTTTTTTATTGAATACACTCTTTTTTGTAAGCATAACGTTTA
TAAGCATACTTAGGCTCAAACTTTGTAAAAAACAAGCATAATGCTAAGCA
TACCTCCAAGCTAAAATGCAAAAAAACTTGTACAGCTTTTCTAAAACGCG
GACCTTTTTAAAGCTGTTTTAGCTTTCTTAGACCAAAGATTTTAGCCAGT
AATTTTTATGAGCCGAATCAATGTTCCGACTTAAAAAATTGGAAATTTCC
ATTAACCCAAAGCAAATTCACAAGACGAAGTCTAAGCCAATAAATAAGCA
TAAATTAAGGCTGAAAATTAGATTTTGCTAAGCATTCTGAGCCTCGAACC
GATTTTCCCGTATGCTTACAAAAAAAGAAAAGAAAAGAGTGTAACCCTTT
TGGAAAAGAGGAAGAAAGGCTAAATTCTGCAAGCAAAATAGCTTAACACC
AATTACAAGACAACGTCATAAATGTAAAATAAGACTGAGAGCTTATCATG
ATAGTCCTTTGGTGAAACGAATTTGAGAAGGCGTGATAAAACAGTCATTT
AAAATTTAGATTTTTTAAGCCGGACGGTATGTTATCAAATGGAAAAGCAC
AATATCATAAAAAAACTCCGACCTTAGAAATTATGTCTCCTCCGTCTACT
TCGGTCATTCTCTACTCTTTGGAAAGATTTATGGTCACATAAATATCATT
AAAAAAATCTGTTTTTATAGAAAGTCGCAAAGGGATTATTTGTCATGGAT
ACTTCCACATCGAGCGTTAAATTTGCGGACGAGTTCAAGTCGACCACAAC
AACATTCTACAAAAAGCGCCCTCCCACGCCCACACGGAAGAAATTCGAAT
TGGGCGAACTCGATACAGAGAATTCGTCAAGCAAATCATCCCGCCTTAAC
CCTGAAGTCGAACGCGAGGAGTCCGCCCTCAAAGATGAGCTACTTCGAAT
CTTCGGTCGGGAGAAGGACGCGATGGAGTCGCATTATTTGGCGAAAATAC
AGGAGCTTTTGCGGAGCTTCAAGAGCAAGAAGTTAGAATGGGAAGAGATG
GTGCGTGCAGAGAGAGAAGACTTGGAAAGACAATTCGAAAGCGAACGTAG
TGAAATCAACCAAAATTTCGCGCAAGAGATCACCAAGATCAGCACGCGCT
TTCAAGAAGAAAAACTCGATATTGACCGACGAAATGAAAACCGCTTACGT
GACCGCGAGACCGAAATGGACCGCGAAAAGCGTGATTTGTCGGATAATTG
GAAATCGCAGATCGATGCCATGAGGAAGGAATGTCAATGTAACTTCGATA
TGAAATTGGAAAGTGAGTTGAAAAAGGAGAAGGAAAAACACAAGACAGAA
ATGGAGTTGCTGGGGAAGAAGTTCGAGCATGCGCAGTATGATTTGGAGAA
ATCAAACGAAAGAGAAGTGACAGAATTGGAAAAGAAATATCAGAAATTGA
TTTTTGACATGGAGAAGAAACAGGATGAGGAGAAGGTAAGAATGAAATGG
ATTTTCAATGTGTGAAAATCCAACGTCCTCTTAATGAGCAAATTTAAACA
AACAAGTTTTTCTGTTTGTAAATATCTTTGCATGAACGTCCGAGGGACAA
AAATAACAGATCTTGTTTGTTAACACGAGGAAAAAGATAAAAGTATGAAT
GATTCCTGTGTTTCACTTTCAGAACAAACTTGAGAAGGAATGGCAGCGGA
AGCTTGAGAACTTGGAGGACGCTTTACGCAAAGAAACCAACTATCGAAAC
GAAAGTGAGAAACTGGCGGCTCATGAAAAAGAAAATCTGAAAGCAATCAA
TGGGATGTTAAAGGAAGAGATTGCCAGGATGAAGGATGAGTGTGAGCGCA
TGCGTAAACAACAACAAGAAGTTCGAGTTATCGAGAAGCAAACTCCTTTC
CAAACCTTCTCGACGCGCGCTGATTTACCAGGTGGCTTGCGTGATGATTT
CGACCGCATCGTGAATGAGTATAAGACAACACTTAAGGAGAGGTTTGCTG
ATGAGCGACAGACCATGGAGGAGAAAATGCAGATGGAGAGAGACAGGTTG
AATGAGAAGTTAGCCCGTGAGCGAGAAGAGATGGAAAAGAGGCTAAACGA
AGAGAAGTTCCGTTTGGAGAGAGATATGGATCGGAGTAGAGATGATATTG
AGAAAGAAGTCGAGAGAAGGTTGCGGNCGCTTTCAAGAAGAAAAACTCGA
TATTGACCGACGAAATGAAAACCGCTTACGTGACCGCGAGACCGAAATGG
ACCGCGAAAAGCGTGATTTATCGGATAATTGGAAATCACAAATCGACGCC
ATGAGGAAGGAATGTCAATGTAACTTCGATATGAAATTGGAAAGTGAGTT
GAAAAAGGAGAAAGAAAAACACAAGACAGACATGGAGTTGCTGGAGAAGA
AGTTCGAGCATGCGCAGTATGATTTGGAGAAATCAAACGAGAGAGAAGTG
ACAGAGTTGGAAAAGAAATATCAGAAATTGATTTTTGACATGGAGAAGAA
ACAGGATGAGGAGAAGGTAAGAATGAAATGGATTTTCAATGTGTGAAAAT
CCAACGTCCTCTTAATGAGCAAATTTAAACAAACAAGTTTTTCTGTTTGT
AAATATCTTTGCATGAACGTCCGAGGGACAAAAATAACAGATCTTGTTTG
TTAACACGAGGAAAAAGATAAAAGTATGAATGATTCCTGTGTTTCACTTT
CAGAACAAACTTGAGAAGGAATGGCAGCGGAAGCTTGAGAACTTGGAGGA
CGCTTTACGCAAAGAAACCAACTATCGAAACGAAAGTGAGAAACTGGCGG
CTCATGAAAAAGAAAATCTGAAAGCTATCAATGAGATGTTAAAGGAAGAG
ATTGCCAGGATGAAGGATGAGTGTGAGCGCATGCGTAAACAACAACAAGA
AGTTCGAGTTATCGAGAAGCAAACTTCTTCCCAAACCTTCTCGACGCGCG
CTGATTTACCAGGTGGCTTGCGTGATGATTTCGACCGCATCGTGAATGAG
TATAAGACAACACTTAAGGAGAGGTTTGCTGATGAGCGACAGACCATGGA
GGAGAAAATGCAGATGGAGAGAGACAGGTTGAATGAGAAGTTAGCCCGTG
AGCGAGAAGAGATGGAAAAGAGGCTAAACGAAGAGAAGTTCCGTTTGGAG
AGAGATATGGATCGGAGTAGAGATGATATTGAGAAAGAAGTCGAGAGAAG
GTTGCGGTCGAAGCAACTATCCGACACATTGTTGGCGCAACAACAGAGGT
TTGACGAGGTCGCACGGAGACTCGAAGAAGAAGAAAAGAATCGGTATGAG
CGCCTCAAGGACACCGAATTCCGGCAGTTTGAATCAAAGATTGGCGATTT
ACAACGGGAAAATGAAGGTTTAAAAGCCAAAATCCAATTACTGGAAGATA
ACAATAAAGTCTTAAAGAGCTTGAAAGAGGAAGGACAACAGGAGGTCGAA
CGTCTTCGAAAAGCTGTGGAGGATTTAAAAACAGTCGTTGAAGCGAGGCG
GGAATCGGATCGCACACGTGCACAAACACCGTCCGAGTTCACTCCTTTCT
TGATGTCTATGATGCAACAGAACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021311XLOC_021311Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036237-exon-sc0001428-1575043694:51692..51727TCONS_00036237-exon-sc0001428-1575043694:51692..51727Clytia hemisphaericaexon
TCONS_00036237-exon-sc0001428-1575043694:50759..50854TCONS_00036237-exon-sc0001428-1575043694:50759..50854Clytia hemisphaericaexon
TCONS_00036237-exon-sc0001428-1575043694:50287..50545TCONS_00036237-exon-sc0001428-1575043694:50287..50545Clytia hemisphaericaexon
TCONS_00036237-exon-sc0001428-1575043694:48793..49557TCONS_00036237-exon-sc0001428-1575043694:48793..49557Clytia hemisphaericaexon
TCONS_00036237-exon-sc0001428-1575043694:46702..47574TCONS_00036237-exon-sc0001428-1575043694:46702..47574Clytia hemisphaericaexon
TCONS_00036237-exon-sc0001428-1510915933:51692..51727TCONS_00036237-exon-sc0001428-1510915933:51692..51727Clytia hemisphaericaexon
TCONS_00036237-exon-sc0001428-1510915933:50759..50854TCONS_00036237-exon-sc0001428-1510915933:50759..50854Clytia hemisphaericaexon
TCONS_00036237-exon-sc0001428-1510915933:50287..50545TCONS_00036237-exon-sc0001428-1510915933:50287..50545Clytia hemisphaericaexon
TCONS_00036237-exon-sc0001428-1510915933:48793..49557TCONS_00036237-exon-sc0001428-1510915933:48793..49557Clytia hemisphaericaexon
TCONS_00036237-exon-sc0001428-1510915933:46702..47574TCONS_00036237-exon-sc0001428-1510915933:46702..47574Clytia hemisphaericaexon
TCONS_00036237-exon-sc0001428-1491911889:51692..51727TCONS_00036237-exon-sc0001428-1491911889:51692..51727Clytia hemisphaericaexon
TCONS_00036237-exon-sc0001428-1491911889:50759..50854TCONS_00036237-exon-sc0001428-1491911889:50759..50854Clytia hemisphaericaexon
TCONS_00036237-exon-sc0001428-1491911889:50287..50545TCONS_00036237-exon-sc0001428-1491911889:50287..50545Clytia hemisphaericaexon
TCONS_00036237-exon-sc0001428-1491911889:48793..49557TCONS_00036237-exon-sc0001428-1491911889:48793..49557Clytia hemisphaericaexon
TCONS_00036237-exon-sc0001428-1491911889:46702..47574TCONS_00036237-exon-sc0001428-1491911889:46702..47574Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001428supercontigsc0001428:46702..51727 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000748801	0.000880667	0.00160973	0.000838322	0	0.0094207	0.0327935	0.0682153	0.0372987	0.0702824	0	2.93241e-06	0.648049	0.102232	2.01969	3.3587	1.51468	2.22521	0	0.0135594	0.133796	3.9995	1.67835	1.7389	0.165447	0.290148	0.0610106	0.0384108	0.0166591	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036237 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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