TCONS_00036235 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036235
Unique NameTCONS_00036235
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2025

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036235 ID=TCONS_00036235|Name=TCONS_00036235|organism=Clytia hemisphaerica|type=transcript|length=2025bp
CAGGAACATACAACTCAACTGAATTAGCCCAGTTGGTGAGATGAGACGTT
GAAGCGATGAATGACACAGCAGATGGCCGCTCGTGAGAATAGCAGAATAG
TGGATTGAAATCATTCGAAACATTCAAGTAAACAGCTGAAGCATAGATGA
ATTGAACTGAATGAGAGCATCTCTCTTGGCAAACTTGAATGAAGCATTCA
CCTCAAAAGACGCTTTacaataaagaagaaaatgaaatactGAATGTGAG
CTCGGCAACCACTTGcaaaaaaagcaacataaagATAATTTTGCGGTTTA
TAGCGTAAAAATAAACTATGCTGTCCGTTAATTAAATGTCTTGAATTGAA
ATCACGGACACCGCTGTCATTAGAGGTAGACTTGCAGAAAGTCGCAAAGG
GATTATTTGTCATGGATACTTCCACATCGAGCGTTAAATTTGCGGACGAG
TTCAAGTCGACCACAACAACATTCTACAAAAAGCGCCCTCCCACGCCCAC
ACGGAAGAAATTCGAATTGGGCGAACTCGATACAGAGAATTCGTCAAGCA
AATCATCCCGCCTTAACCCTGAAGTCGAACGCGAGGAGTCCGCCCTCAAA
GATGAGCTACTTCGAATCTTCGGTCGGGAGAAGGACGCGATGGAGTCGCA
TTATTTGGCGAAAATACAGGAGCTTTTGCGGAGCTTCAAGAGCAAGAAGT
TAGAATGGGAAGAGATGGTGCGTGCAGAGAGAGAAGACTTGGAAAGACAA
TTCGAAAGCGAACGTAGTGAAATCAACCAAAATTTCGCGCAAGAGATCAC
CAAGATCAGCACGCGCTTTCAAGAAGAAAAACTCGATATTGACCGACGAA
ATGAAAACCGCTTACGTGACCGCGAGACCGAAATGGACCGCGAAAAGCGT
GATTTGTCGGATAATTGGAAATCGCAGATCGATGCCATGAGGAAGGAATG
TCAATGTAACTTCGATATGAAATTGGAAAGTGAGTTGAAAAAGGAGAAGG
AAAAACACAAGACAGAAATGGAGTTGCTGGGGAAGAAGTTCGAGCATGCG
CAGTATGATTTGGAGAAATCAAACGAAAGAGAAGTGACAGAATTGGAAAA
GAAATATCAGAAATTGATTTTTGACaTGGAGAAGAAACAGGATGAGGAGA
AGAACAAACTTGAGAAGGAATGGCAGCGGAAGCTTGAGAACTTGGAGGAC
GCTTTACGCAAAGAAACCAACTATCGAAACGAAAGTGAGAAACTGGCGGc
tcatgaaaaagaaaatctgaaaGCTATCAATGAGATGTTAAAGGAAGAGA
TTGCCAGGATGAAGGATGAGTGTGAGCGCATGCGTAAACAACAACAAGAA
GTTCGAGTTATCGAGAAGCAAACTTCTTCCCAAACCTTCTCGACGCGCGC
TGATTTACCAGGTGGCTTGCGTGATGATTTCGACCGCATCGTGAATGAGT
ATAAGACAACACTTAAGGAGAGGTTTGCTGATGAGCGACAGACCATGGAG
GAGAAAATGCAGATGGAGAGAGACAGGTTGAATGAGAAGTTAGCCCGTGA
GCGAGAAGAGATGGAAAAGAGGCTAAACGAAGAGAAGTTCCGTTTGGAGA
GAGATATGGATCGGAGTAGAGATGATATTGAGAAAGAAGTCGAGAGAAGG
TTGCGGTCGAAGCAACTATCCGACACATTGTTGGCGCAACAACAGAGGTT
TGACGAGGTCGCACGGAGActcgaagaagaagaaaagaatcgGTATGAGC
GCCTCAAGGACACCGAATTCCGGCAGTTTGAATCAAAGATTGGCGATTTA
CAACGGGAAAATGAAGGtttaaaagccaaaatccaattACTGGAAGATAA
CAATAAAGTCTTAAAGAGCTTGAAAGAGGAAGGACAACAGGAGGTCGAAC
GTCTTCGAAAAGCTGTGGAGGATTTAAAAACAGTCGTTGAAGCGAGGCGG
GAATCGGATCGCACACGTGCACAAACACCGTCCGAGTTCACTCCTTTCTT
GATGTCTATGATGCAACAGAACCAG
Run BLAST on NCBI

transcript from alignment at sc0001428:46702..51723-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036235 ID=TCONS_00036235|Name=TCONS_00036235|organism=Clytia hemisphaerica|type=transcript|length=5022bp|location=Sequence derived from alignment at sc0001428:46702..51723- (Clytia hemisphaerica)
CAGGAACATACAACTCAACTGAATTAGCCCAGGTAGGTAGTAATTGGCAT
ATTTACAATTTCCTGAAATATTATGCATTTTCGAACCAAAGAGAATATAA
AAAACAAATGGCCACCCTCCGTCAACAGAGTCTACTTTGCCCTTATCCGA
GTGACGTCATAATCGCCCTCCCTTGCTGTGCCAGCATAATACATATGAGA
AGTTCAAGTTGAGGCTGCTACTAGAAACTAAAAAGATAAAGATTTTGCAG
CTCTCTGTCCCTGCAATTATTGTTGAAGGTGATCCTTATTGCATAGCTAC
ATTACTATTGATTTTATCGGTAAAACTTTTCCCCGAAAATTATTATTCGA
AGGTTACCCATTATTTAAGGCCAAACTTATATCTAACGACTGGAATGGTA
CGACATTGGAATGGTAAATATAGAGCATCACTTCTTGGTCGATCAAGTTA
ATATTTTCCATTGCATTTGCAAGACCAGCAAACAGTTTTATAGTATATGT
GTGGGCATTAACCTTGCTATAAAAAATACGATCCAATGCATAGTCTAAAG
TTAAAGGCGAATCTCAGACACTCAGTCTCAGAAGTTTTTCTTCTGAAGAA
GAATGAGCGAAGGGCAAATCTCTATGCACGAACACAATATCGACAGTAGT
TTGGGCCCGGTGAGAATATCAAATCTAATGTATCTGAGATGATCGTTCAT
GAAATGTTGAAAGTTTTTCTATAAGAGGGTGAGTCACACATTTTCTCCCT
TTAAAAAATCTCTGACGATGATAAATCGGTGTGAATAATTTACTAAAAAG
TACATCGATTTTTAAAGCAGAAATTTAGATTCGCATTAAGGTTTTGTAAA
CTTTCTATTTATACCATAGTTGGTGAGATGAGACGTTGAAGCGATGAATG
ACACAGCAGATGGCCGCTCGTGAGAATAGCAGAATAGTGGATTGAAATCA
TTCGAAACATTCAAGGTATGGAGGCATGATTTTGATTACATTTTAATCAG
CTTTTTTTATAAGAAATCAAGAGTTTAATACCTTCACTCTATATATTGAA
GTAATTCTTATGTTATTTTTCTAGTGAAATTAGATTGGTTAAAAAAGGCA
AAAGAGAACGACTTGAGACACTTTTGATTTCTCAGTTAGAGACATAACAC
AATTTTTTAATCAACTTTGTTCTTATAGTAAACAGCTGAAGCATAGATGA
ATTGAACTGAATGAGAGCATCTCTCTTGGCAAACTTGAATGAAGCATTCA
CCTCAAAAGACGCTTTACAATAAAGAAGAAAATGAAATACTGAATGTGAG
CTCGGCAACCACTTGCAAAAAAAGCAACATAAAGATAATTTTGCGGTTTA
TAGCGTAAAAATAAACTATGCTGTCCGTTAATTAAATGTCTTGAATTGAA
ATCACGGACACCGCTGTCATTAGAGGTAGACTTGCAGGTAAGTGACTTCT
CAATCTTTTTTATTGAATACACTCTTTTTTGTAAGCATAACGTTTATAAG
CATACTTAGGCTCAAACTTTGTAAAAAACAAGCATAATGCTAAGCATACC
TCCAAGCTAAAATGCAAAAAAACTTGTACAGCTTTTCTAAAACGCGGACC
TTTTTAAAGCTGTTTTAGCTTTCTTAGACCAAAGATTTTAGCCAGTAATT
TTTATGAGCCGAATCAATGTTCCGACTTAAAAAATTGGAAATTTCCATTA
ACCCAAAGCAAATTCACAAGACGAAGTCTAAGCCAATAAATAAGCATAAA
TTAAGGCTGAAAATTAGATTTTGCTAAGCATTCTGAGCCTCGAACCGATT
TTCCCGTATGCTTACAAAAAAAGAAAAGAAAAGAGTGTAACCCTTTTGGA
AAAGAGGAAGAAAGGCTAAATTCTGCAAGCAAAATAGCTTAACACCAATT
ACAAGACAACGTCATAAATGTAAAATAAGACTGAGAGCTTATCATGATAG
TCCTTTGGTGAAACGAATTTGAGAAGGCGTGATAAAACAGTCATTTAAAA
TTTAGATTTTTTAAGCCGGACGGTATGTTATCAAATGGAAAAGCACAATA
TCATAAAAAAACTCCGACCTTAGAAATTATGTCTCCTCCGTCTACTTCGG
TCATTCTCTACTCTTTGGAAAGATTTATGGTCACATAAATATCATTAAAA
AAATCTGTTTTTATAGAAAGTCGCAAAGGGATTATTTGTCATGGATACTT
CCACATCGAGCGTTAAATTTGCGGACGAGTTCAAGTCGACCACAACAACA
TTCTACAAAAAGCGCCCTCCCACGCCCACACGGAAGAAATTCGAATTGGG
CGAACTCGATACAGAGAATTCGTCAAGCAAATCATCCCGCCTTAACCCTG
AAGTCGAACGCGAGGAGTCCGCCCTCAAAGATGAGCTACTTCGAATCTTC
GGTCGGGAGAAGGACGCGATGGAGTCGCATTATTTGGCGAAAATACAGGA
GCTTTTGCGGAGCTTCAAGAGCAAGAAGTTAGAATGGGAAGAGATGGTGC
GTGCAGAGAGAGAAGACTTGGAAAGACAATTCGAAAGCGAACGTAGTGAA
ATCAACCAAAATTTCGCGCAAGAGATCACCAAGATCAGCACGCGCTTTCA
AGAAGAAAAACTCGATATTGACCGACGAAATGAAAACCGCTTACGTGACC
GCGAGACCGAAATGGACCGCGAAAAGCGTGATTTGTCGGATAATTGGAAA
TCGCAGATCGATGCCATGAGGAAGGAATGTCAATGTAACTTCGATATGAA
ATTGGAAAGTGAGTTGAAAAAGGAGAAGGAAAAACACAAGACAGAAATGG
AGTTGCTGGGGAAGAAGTTCGAGCATGCGCAGTATGATTTGGAGAAATCA
AACGAAAGAGAAGTGACAGAATTGGAAAAGAAATATCAGAAATTGATTTT
TGACATGGAGAAGAAACAGGATGAGGAGAAGGTAAGAATGAAATGGATTT
TCAATGTGTGAAAATCCAACGTCCTCTTAATGAGCAAATTTAAACAAACA
AGTTTTTCTGTTTGTAAATATCTTTGCATGAACGTCCGAGGGACAAAAAT
AACAGATCTTGTTTGTTAACACGAGGAAAAAGATAAAAGTATGAATGATT
CCTGTGTTTCACTTTCAGAACAAACTTGAGAAGGAATGGCAGCGGAAGCT
TGAGAACTTGGAGGACGCTTTACGCAAAGAAACCAACTATCGAAACGAAA
GTGAGAAACTGGCGGCTCATGAAAAAGAAAATCTGAAAGCAATCAATGGG
ATGTTAAAGGAAGAGATTGCCAGGATGAAGGATGAGTGTGAGCGCATGCG
TAAACAACAACAAGAAGTTCGAGTTATCGAGAAGCAAACTCCTTTCCAAA
CCTTCTCGACGCGCGCTGATTTACCAGGTGGCTTGCGTGATGATTTCGAC
CGCATCGTGAATGAGTATAAGACAACACTTAAGGAGAGGTTTGCTGATGA
GCGACAGACCATGGAGGAGAAAATGCAGATGGAGAGAGACAGGTTGAATG
AGAAGTTAGCCCGTGAGCGAGAAGAGATGGAAAAGAGGCTAAACGAAGAG
AAGTTCCGTTTGGAGAGAGATATGGATCGGAGTAGAGATGATATTGAGAA
AGAAGTCGAGAGAAGGTTGCGGNCGCTTTCAAGAAGAAAAACTCGATATT
GACCGACGAAATGAAAACCGCTTACGTGACCGCGAGACCGAAATGGACCG
CGAAAAGCGTGATTTATCGGATAATTGGAAATCACAAATCGACGCCATGA
GGAAGGAATGTCAATGTAACTTCGATATGAAATTGGAAAGTGAGTTGAAA
AAGGAGAAAGAAAAACACAAGACAGACATGGAGTTGCTGGAGAAGAAGTT
CGAGCATGCGCAGTATGATTTGGAGAAATCAAACGAGAGAGAAGTGACAG
AGTTGGAAAAGAAATATCAGAAATTGATTTTTGACATGGAGAAGAAACAG
GATGAGGAGAAGGTAAGAATGAAATGGATTTTCAATGTGTGAAAATCCAA
CGTCCTCTTAATGAGCAAATTTAAACAAACAAGTTTTTCTGTTTGTAAAT
ATCTTTGCATGAACGTCCGAGGGACAAAAATAACAGATCTTGTTTGTTAA
CACGAGGAAAAAGATAAAAGTATGAATGATTCCTGTGTTTCACTTTCAGA
ACAAACTTGAGAAGGAATGGCAGCGGAAGCTTGAGAACTTGGAGGACGCT
TTACGCAAAGAAACCAACTATCGAAACGAAAGTGAGAAACTGGCGGCTCA
TGAAAAAGAAAATCTGAAAGCTATCAATGAGATGTTAAAGGAAGAGATTG
CCAGGATGAAGGATGAGTGTGAGCGCATGCGTAAACAACAACAAGAAGTT
CGAGTTATCGAGAAGCAAACTTCTTCCCAAACCTTCTCGACGCGCGCTGA
TTTACCAGGTGGCTTGCGTGATGATTTCGACCGCATCGTGAATGAGTATA
AGACAACACTTAAGGAGAGGTTTGCTGATGAGCGACAGACCATGGAGGAG
AAAATGCAGATGGAGAGAGACAGGTTGAATGAGAAGTTAGCCCGTGAGCG
AGAAGAGATGGAAAAGAGGCTAAACGAAGAGAAGTTCCGTTTGGAGAGAG
ATATGGATCGGAGTAGAGATGATATTGAGAAAGAAGTCGAGAGAAGGTTG
CGGTCGAAGCAACTATCCGACACATTGTTGGCGCAACAACAGAGGTTTGA
CGAGGTCGCACGGAGACTCGAAGAAGAAGAAAAGAATCGGTATGAGCGCC
TCAAGGACACCGAATTCCGGCAGTTTGAATCAAAGATTGGCGATTTACAA
CGGGAAAATGAAGGTTTAAAAGCCAAAATCCAATTACTGGAAGATAACAA
TAAAGTCTTAAAGAGCTTGAAAGAGGAAGGACAACAGGAGGTCGAACGTC
TTCGAAAAGCTGTGGAGGATTTAAAAACAGTCGTTGAAGCGAGGCGGGAA
TCGGATCGCACACGTGCACAAACACCGTCCGAGTTCACTCCTTTCTTGAT
GTCTATGATGCAACAGAACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021311XLOC_021311Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036235-exon-sc0001428-1575043694:51692..51723TCONS_00036235-exon-sc0001428-1575043694:51692..51723Clytia hemisphaericaexon
TCONS_00036235-exon-sc0001428-1575043694:50759..50854TCONS_00036235-exon-sc0001428-1575043694:50759..50854Clytia hemisphaericaexon
TCONS_00036235-exon-sc0001428-1575043694:50287..50545TCONS_00036235-exon-sc0001428-1575043694:50287..50545Clytia hemisphaericaexon
TCONS_00036235-exon-sc0001428-1575043694:48820..49557TCONS_00036235-exon-sc0001428-1575043694:48820..49557Clytia hemisphaericaexon
TCONS_00036235-exon-sc0001428-1575043694:47762..47788TCONS_00036235-exon-sc0001428-1575043694:47762..47788Clytia hemisphaericaexon
TCONS_00036235-exon-sc0001428-1575043694:46702..47574TCONS_00036235-exon-sc0001428-1575043694:46702..47574Clytia hemisphaericaexon
TCONS_00036235-exon-sc0001428-1510915933:51692..51723TCONS_00036235-exon-sc0001428-1510915933:51692..51723Clytia hemisphaericaexon
TCONS_00036235-exon-sc0001428-1510915933:50759..50854TCONS_00036235-exon-sc0001428-1510915933:50759..50854Clytia hemisphaericaexon
TCONS_00036235-exon-sc0001428-1510915933:50287..50545TCONS_00036235-exon-sc0001428-1510915933:50287..50545Clytia hemisphaericaexon
TCONS_00036235-exon-sc0001428-1510915933:48820..49557TCONS_00036235-exon-sc0001428-1510915933:48820..49557Clytia hemisphaericaexon
TCONS_00036235-exon-sc0001428-1510915933:47762..47788TCONS_00036235-exon-sc0001428-1510915933:47762..47788Clytia hemisphaericaexon
TCONS_00036235-exon-sc0001428-1510915933:46702..47574TCONS_00036235-exon-sc0001428-1510915933:46702..47574Clytia hemisphaericaexon
TCONS_00036235-exon-sc0001428-1491911889:51692..51723TCONS_00036235-exon-sc0001428-1491911889:51692..51723Clytia hemisphaericaexon
TCONS_00036235-exon-sc0001428-1491911889:50759..50854TCONS_00036235-exon-sc0001428-1491911889:50759..50854Clytia hemisphaericaexon
TCONS_00036235-exon-sc0001428-1491911889:50287..50545TCONS_00036235-exon-sc0001428-1491911889:50287..50545Clytia hemisphaericaexon
TCONS_00036235-exon-sc0001428-1491911889:48820..49557TCONS_00036235-exon-sc0001428-1491911889:48820..49557Clytia hemisphaericaexon
TCONS_00036235-exon-sc0001428-1491911889:47762..47788TCONS_00036235-exon-sc0001428-1491911889:47762..47788Clytia hemisphaericaexon
TCONS_00036235-exon-sc0001428-1491911889:46702..47574TCONS_00036235-exon-sc0001428-1491911889:46702..47574Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001428supercontigsc0001428:46702..51723 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0133699	0.0142735	0.0329428	0.0129737	0	0.154376	0.444741	1.28404	0.989588	0.000878936	0	2.7159e-07	2.72924	3.42481	1.29686	2.51399	2.37759	1.18563	0	0.259194	2.82997	1.07891	1.19022	1.9158	2.92819	5.12393	1.24582	0.656303	0.305407	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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