TCONS_00036230 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036230
Unique NameTCONS_00036230
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2267

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036230 ID=TCONS_00036230|Name=TCONS_00036230|organism=Clytia hemisphaerica|type=transcript|length=2267bp
CGAAAGTGAGAAACTGGCGGctcatgaaaaagaaaatctgaaaGCTATCA
ATGAGATGTTAAAGGAAGAGATTGCCAGGATGAAGGATGAGTGTGAGCGC
ATGCGTAAACAACAACAAGAAGTTCGAGTTATCGAGAAGCAAACTTCTTC
CCAAACCTTCTCGACGCGCGCTGATTTACCAGGTGGCTTGCGTGATGATT
TCGACCGCATCGTGAATGAGTATAAGACAACACTTAAGGAGAGGTTTGCT
GATGAGCGACAGACCATGGAGGAGAAAATGCAGATGGAGAGAGACAGGTT
GAATGAGAAGTTAGCCCGTGAGCGAGAAGAGATGGAAAAGAGGCTAAACG
AAGAGAAGTTCCGTTTGGAGAGAGATATGGATCGGAGTAGAGATGATATT
GAGAAAGAAGTCGAGAGAAGGTTGCGGTCGAAGCAACTATCCGACACATT
GTTGGCGCAACAACAGAGGTTTGACGAGGTCGCACGGAGActcgaagaag
aagaaaagaatcgGTATGAGCGCCTCAAGGACACCGAATTCCGGCAGTTT
GAATCAAAGATTGGCGATCTACAACGGGAAAATGAAGGtttaaaagccaa
aatccaattACTGGAAGATAACAATAAAGTCTTAAAGAGCTTGAAAGAGG
AAGGACAACAGGAGGTCGAACGTCTTCGAAAAGCTGTGGAGGATTTGAAA
ACAGTCGTTGAAGCGAGGCGGGAATCGGATCGCACACGTGCACAAACACC
GGCCGAGTTCACTCCTTTCTTGATGTCTATGATGCAACAGAACCAAAATC
AACATAACCAGACACAAGATGATCCCATTTCACAAAAAAGCCAATTGGAT
GAGTTGTACATGGAAAGAAGGAAActggaagatttgaaaaatgacctTCA
GAAACAAGAAAGGGATATCCGTGAGCGACGCACGATGGAGGATGCGGCAA
AGATGGCGGCCAACCAATCACAAGAGAAATATGAAAGTTTGTTATCAGAG
AAACGGCGCTTGGAACGCCAATTACAAACACTCGAGCAACGCGTTATCAA
TATGCAGGATGAATTCACTAAGTTAAgaacacaacaacaacaagttGTAC
CTGCTCCATCAGGACCACATCAAATCGTTTTACAGACACCACCTTCACCA
ACAAAAGAACAGAAGGAGACGTCTACATCTCAACCAGTAAACGTGTTCAA
TATCCCAGCATCCAACACGCAACCACCTGCCACCAACATGCAACAATCCA
CACCCAACGCACCTGGTCAGATGCCACACCCATTCTTTTACCCTCATCCA
CCAATGTTCTCTCCTAATGACCAGACGGAGAAAATCAGTAAACTCAAAGC
TACTAAGGAACGTTTAACAAGACAATTGGAGGACTTACAAAGAGAACTAA
GAGATGCGAACCAAGAGAATTCCATGTTGCAGCGACAATGTCAAGATTGT
GAGAGAAGGATCGAGAAGTTGACGACAGCCCTGGAGAAGGAGCAGGAGAT
GACTGGCAATCTGAAGGATATCTTGAGCGAGGAGAAAATGAGGGTCAATA
AACTGAAAGACGATTTGGACCGTGAAAGTGAAAATGTTGTGAGAGCTCGC
ACAGAAACAGAGGAGATCAGGTCAAACTTACAACAAGACATCCACGATCT
TCAAAACAAGCTACATCTTGCTGAAATCACATTAGCAACATCACGCCAAC
AGCAGCAACACCAACATGTGGCACCTCCACCTCCTCCCGCCCAACCTGTA
GTCGAAACCAAGCCACCCATACCACCAACGGCGCCAACAAACACTCATAT
TCCATACCATATCCAACCACGTGAGCAGCACGTGGGAATGGTTTCTTTAC
CTTCGATGCCAGTGGTGGGTCCACAACAAATGATGGCGCCGCAAGCAGCA
CCGNTGGTTTCTTTACCTTCGATGCCAGTGGTGGGACCACAACAAATGAT
AGCACCGCAAGTGGCACCGTATTACGCTGCAAACGCAGCTCGCCGTCGAC
TGAGTTTGAACAAGACAGCGGATTCCATTACACAAGTAGAGTTAGACCAA
GTCCGTTCATTAGAAGAGGAGAAGTACCGCTTACAACGTGAACTGCAAGA
TACCAAAGGGGCTCTCGATGCGTATACTACGAAATTACGTGGTCAGACAT
CTGACATGACGCACCACATGGTGAGAGAACGAAGCAATTCTGTTGATTTC
GATGGAAAATGCAaAAATGCTCAAGAAGATTGGAAATTGTTCCTGTCAAC
GATAATAAAAATCGGCA
Run BLAST on NCBI

transcript from alignment at sc0001428:40874..45349-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036230 ID=TCONS_00036230|Name=TCONS_00036230|organism=Clytia hemisphaerica|type=transcript|length=4476bp|location=Sequence derived from alignment at sc0001428:40874..45349- (Clytia hemisphaerica)
CGAAAGTGAGAAACTGGCGGCTCATGAAAAAGAAAATCTGAAAGCTATCA
ATGAGATGTTAAAGGAAGAGATTGCCAGGATGAAGGATGAGTGTGAGCGC
ATGCGTAAACAACAACAAGAAGTTCGAGTTATCGAGAAGCAAACTTCTTC
CCAAACCTTCTCGACGCGCGCTGATTTACCAGGTGGCTTGCGTGATGATT
TCGACCGCATCGTGAATGAGTATAAGACAACACTTAAGGAGAGGTTTGCT
GATGAGCGACAGACCATGGAGGAGAAAATGCAGATGGAGAGAGACAGGTT
GAATGAGAAGTTAGCCCGTGAGCGAGAAGAGATGGAAAAGAGGCTAAACG
AAGAGAAGTTCCGTTTGGAGAGAGATATGGATCGGAGTAGAGATGATATT
GAGAAAGAAGTCGAGAGAAGGTTGCGGTCGAAGCAACTATCCGACACATT
GTTGGCGCAACAACAGAGGTTTGACGAGGTCGCACGGAGACTCGAAGAAG
AAGAAAAGAATCGGTATGAGCGCCTCAAGGACACCGAATTCCGGCAGTTT
GAATCAAAGATTGGCGATCTACAACGGGAAAATGAAGGTTTAAAAGCCAA
AATCCAATTACTGGAAGATAACAATAAAGTCTTAAAGAGCTTGAAAGAGG
AAGGACAACAGGAGGTCGAACGTCTTCGAAAAGCTGTGGAGGATTTGAAA
ACAGTCGTTGAAGCGAGGCGGGAATCGGATCGCACACGTGCACAAACACC
GGCCGAGTTCACTCCTTTCTTGATGTCTATGATGCAACAGAACCAAAATC
AACATAACCAGACACAAGATGATCCCATTTCACAAAAAAGCCAATTGGAT
GAGTTGTACATGGAAAGAAGGAAACTGGAAGATTTGAAAAATGACCTTCA
GAAACAAGAAAGGGTAAGAATAAACTTATGTTTTTAGCGGAAAACATTAT
TATATCTAAGAAAAGTTTGAAAATCTCTCATATACAGTGGAAACTCTTTA
ACCGATCCTCTATAACTCGAATGCCTCCCTTACACGAACGAGTTATCTCA
CCCCTTAAGTTAAAAATACCTTATAAACCTCACTCCAAAACTCGAAATTT
CTCGAGCAAACCGATGTTTTTCAAGGGTGTTCCAGGAGATTCAACTGTAT
CCAAATCTATCAGGGATGACAGTCTATCGGAATCACACGAGTCGGTGAGA
ATGGTGACTTCTTTTAAAATGTCAGTGATACTGATACTCAAAATAAAACT
TGTATTGTATATTTCCCCTGTACACAGGATATCCGTGAGCGACGCACGAT
GGAGGATGCGGCAAAGATGGCGGCCAACCAATCACAAGAGAAATATGAAA
GTTTGTTATCAGAGAAACGGCGCTTGGAACGCCAATTACAAACACTCGAG
CAACGCGTTATCAATATGCAGGATGAATTCACTAAGTTAAGAACACAACA
ACAACAAGTTGTACCTGCTCCATCAGGACCACATCAAATCGTTTTACAGG
TGAGAATTTTTAGCACTACCGAGCCCTTTTCAGAAATCGAAAAACTAAAC
CTTTTGAATAAAGGTTTTAAACTTTCAGAGGCTACCTAATTTTGGGTTCA
AATACCTTCAACCTGTATGCCAATCATCGCAGGGTTTCTGTAGATTTCCA
AAGTGCAAAATGTTTTTTCGTCATGGCCATTTTAAGTACTACGGGTATTT
TGACTCCTCTGCAGCGAGTATACTGCAGTGTTTCAGCATTTTAACCTGTT
GAGCTACACAAGTACCCATGTCGTATTTCACTATAGTAGCTACAGCAAAT
AACTTTTGAGGCATTTTTCCATTGTTCTGGCTAATCCATTGCCTTCCCAA
TTACCTTAAATAAAAACCATACAACAGGATAAACAAAAAACACCAAACAT
ATATAACTCCCAACATATTTCTATCTAACTATAGACACCACCTTCACCAA
CAAAAGAACAGAAGGAGACGTCTACATCTCAACCAGTAAACGTGTTCAAT
ATCCCAGCATCCAACACGCAACCACCTGCCACCAACATGCAACAATCCAC
ACCCAACGCACCTGGTCAGATGCCACACCCATTCTTTTACCCTCATCCAC
CAATGTTCTCTCCTAATGACCAGACGGAGAAAATCAGTAAACTCAAAGCT
ACTAAGGAACGTTTAACAAGACAATTGGAGGACTTACAAAGAGAACTAAG
AGATGCGAACCAAGAGAATTCCATGTTGCAGCGACAATGTCAAGATTGTG
AGAGAAGGATCGAGAAGTTGACGACAGCCCTGGAGAAGGAGCAGGAGATG
ACTGGCAATCTGAAGGATATCTTGAGCGAGGAGAAAATGAGGGTCAATAA
ACTGAAAGACGATTTGGACCGTGAAAGTGAAAATGTAAGTAAGAACTCTT
CAAGATTGACGTTTTAAAAGCATCCGGTCTAATACTGTACTCTCGTTTTT
AACAGTGGGGTACTCCTTCTCGTCTGCCTCCTACTTGCTCAATCATATGC
CAAATATTTCTTTGCGATTTTTTTAGGTTGTGAGAGCTCGCACAGAAACA
GAGGAGATCAGGTCAAACTTACAACAAGACATCCACGATCTTCAAAACAA
GCTACATCTTGCTGAAATCACATTAGCAACATCACGCCAACAGCAGCAAC
ACCAACATGTGGCACCTCCACCTCCTCCCGCCCAACCTGTAGTCGAAACC
AAGCCACCCATACCACCAACGGCGCCAACAAACACTCATATTCCATACCA
TATCCAACCACGTGAGCAGCACGTGGGAATGGTTTCTTTACCTTCGATGC
CAGTGGTGGGTCCACAACAAATGATGGCGCCGCAAGCAGCACCGNTGGTT
TCTTTACCTTCGATGCCAGTGGTGGGACCACAACAAATGATAGCACCGCA
AGTGGCACCGTATTACGCTGCAAACGCAGGTATGCGTGCACCATGACTTT
TTATGACGTTCTATCTTAATGTCCTAGAATGAGGACAGGAAATTTGAATT
GAAAATGATATAATAAAACCAAGAGGAGCAAATACAAGTCTGACTACTTT
GAAGTCTTTTTTTCAATATTCTCTATTCTTCCTTTTAGCTCGCCGTCGAC
TGAGTTTGAACAAGACAGCGGATTCCATTACACAAGTAGAGTTAGACCAA
GTCCGTTCATTAGAAGAGGAGAAGTACCGCTTACAACGTGAACTGCAAGA
TACCAAAGGGGCTCTCGATGCGTATACTACGAAATTACGTGGTCAGGTAA
GCGTATGTTTCACAAATTAAACAACTAAAAGGAGGCGCATTTCGTTTTGT
TTGCCTTTTGCTTACCCATTAACGGAAGTGGTTTGTAAAGAATTCTCCAA
GGCCTTATAAAACTCTAGTAAACAACACACCAACCAAATGATTTTATTTT
CTAGACATCTGACATGACGCACCACATGGTGAGAGAACGAAGCAATTCTG
TTGATTTCGATGGAAAATGCAGCAAGAAGCATTTACGGTCACAAAAGTTA
CAATTACAAAAATTAATCGAACGACTAACTCATCTCGGACCAGCACCACC
TGGTTATTGACCCTGCCACAAAAAATATTAGATGATAGACAATTTTAACC
GAGTTATATTTTCGAACTGAGTATTTTTAGAAATTTGACAGCTGAAACTT
GGATTGAGCGAACTACTATACAAAGCAATAGTTGGCAAACTTAACGTAGA
CCAAGAACCCCTAAGTTTTATATAAACCCATAGACCAACCAACAACGAAG
AAAATAAAAAGAGGTCGCAAAAAACGGGCATGACCAGGTTTTGGTAAGTA
TGTAACAATGACATGTTGTGTGGTCTCTAAACGGTCTCTCCTGACAAGCA
TATATGGTATGGTTGATGTACAAAGAAAAGTAATGGTCAATTTAGAAGCA
GTTGTAGTTTGCAATTAAAGATGTTTCCCGTATGTAAATAGTATTATTTT
TACTTCCTTGTATTTATCGTTTTATGTTGTAAATTTTTTTTCGGAACTTT
TTAAATGTATTTCTAATTTTTGAAATGAAAAATGAAAAATGAAAAATGAT
TTTGCTTAGTTTACTAGTTGACTCCGGATAAAATCCGAACCCTTTGTAAC
TCAGATAACCTAGATTACGAATACATTACCAGATCACGACTTACGCATAG
CATTTCTCTTTACTCCGTATTAAGATTTTAGCCATGTAGTGTGCTTCGAA
AAATTTAAGTCGTCTTTACTAACTTTTATTCCAGAGCTTTTGACAAAAAT
GCACGATAGAACAGAAAAAGGGTCATCGCAATTTTTTTAAAAAGTGACGT
CGAAATTTTTTTCTAAGAATTACGAAGACATTGCAATGTGTTTTCGTTTA
AAAAGATGTCGGCTTCAAAAGAAAGCAAAGGTGTTTGTTTCTTGCGGAAA
GTCTACAAAATATTTGTTTTAGAAAATGCTCAAGAAGATTGGAAATTGTT
CCTGTCAACGATAATAAAAATCGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021311XLOC_021311Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036230-exon-sc0001428-1575043694:44437..45349TCONS_00036230-exon-sc0001428-1575043694:44437..45349Clytia hemisphaericaexon
TCONS_00036230-exon-sc0001428-1575043694:43851..44072TCONS_00036230-exon-sc0001428-1575043694:43851..44072Clytia hemisphaericaexon
TCONS_00036230-exon-sc0001428-1575043694:42966..43415TCONS_00036230-exon-sc0001428-1575043694:42966..43415Clytia hemisphaericaexon
TCONS_00036230-exon-sc0001428-1575043694:42421..42823TCONS_00036230-exon-sc0001428-1575043694:42421..42823Clytia hemisphaericaexon
TCONS_00036230-exon-sc0001428-1575043694:42104..42261TCONS_00036230-exon-sc0001428-1575043694:42104..42261Clytia hemisphaericaexon
TCONS_00036230-exon-sc0001428-1575043694:41879..41945TCONS_00036230-exon-sc0001428-1575043694:41879..41945Clytia hemisphaericaexon
TCONS_00036230-exon-sc0001428-1575043694:40874..40927TCONS_00036230-exon-sc0001428-1575043694:40874..40927Clytia hemisphaericaexon
TCONS_00036230-exon-sc0001428-1510915933:44437..45349TCONS_00036230-exon-sc0001428-1510915933:44437..45349Clytia hemisphaericaexon
TCONS_00036230-exon-sc0001428-1510915933:43851..44072TCONS_00036230-exon-sc0001428-1510915933:43851..44072Clytia hemisphaericaexon
TCONS_00036230-exon-sc0001428-1510915933:42966..43415TCONS_00036230-exon-sc0001428-1510915933:42966..43415Clytia hemisphaericaexon
TCONS_00036230-exon-sc0001428-1510915933:42421..42823TCONS_00036230-exon-sc0001428-1510915933:42421..42823Clytia hemisphaericaexon
TCONS_00036230-exon-sc0001428-1510915933:42104..42261TCONS_00036230-exon-sc0001428-1510915933:42104..42261Clytia hemisphaericaexon
TCONS_00036230-exon-sc0001428-1510915933:41879..41945TCONS_00036230-exon-sc0001428-1510915933:41879..41945Clytia hemisphaericaexon
TCONS_00036230-exon-sc0001428-1510915933:40874..40927TCONS_00036230-exon-sc0001428-1510915933:40874..40927Clytia hemisphaericaexon
TCONS_00036230-exon-sc0001428-1491911889:44437..45349TCONS_00036230-exon-sc0001428-1491911889:44437..45349Clytia hemisphaericaexon
TCONS_00036230-exon-sc0001428-1491911889:43851..44072TCONS_00036230-exon-sc0001428-1491911889:43851..44072Clytia hemisphaericaexon
TCONS_00036230-exon-sc0001428-1491911889:42966..43415TCONS_00036230-exon-sc0001428-1491911889:42966..43415Clytia hemisphaericaexon
TCONS_00036230-exon-sc0001428-1491911889:42421..42823TCONS_00036230-exon-sc0001428-1491911889:42421..42823Clytia hemisphaericaexon
TCONS_00036230-exon-sc0001428-1491911889:42104..42261TCONS_00036230-exon-sc0001428-1491911889:42104..42261Clytia hemisphaericaexon
TCONS_00036230-exon-sc0001428-1491911889:41879..41945TCONS_00036230-exon-sc0001428-1491911889:41879..41945Clytia hemisphaericaexon
TCONS_00036230-exon-sc0001428-1491911889:40874..40927TCONS_00036230-exon-sc0001428-1491911889:40874..40927Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001428supercontigsc0001428:40874..45349 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.15008	0	0	1.94736	1.00747	0.461209	1.90336	0.503302	1.58061	12.0041	7.00827	3.88036	12.8814	7.6456	6.76032	0	1.13004	2.64613	7.15088	0.774559	4.25731	7.1949	15.0316	1.62593	0.831326	0.292769	0.638332
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036230 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top