TCONS_00036229 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036229
Unique NameTCONS_00036229
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length268

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036229 ID=TCONS_00036229|Name=TCONS_00036229|organism=Clytia hemisphaerica|type=transcript|length=268bp
TACTGAACGTGAGTCCTATCCTGAGAAAAACGAATACACTCCTGGAATGC
ATGTAGCAGCTGCATGGCTAAAGGAGGATAGCACAGAATATACATGGTAT
TTAGGTGTGTTAGATTCAGTTGACAATGATTGcttgaaagtttcttattt
cTCAAGAAAGGACAAAGCTGGCAGCCAATGGACATTCCCAGAGGAAGCAG
acattcaaaatacaaagtGTGAACAAATTATTAAAATAGTGGAAAAGGTT
GCTTAGCAGTGCACCGTT
Run BLAST on NCBI

transcript from alignment at sc0001428:23377..23729-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036229 ID=TCONS_00036229|Name=TCONS_00036229|organism=Clytia hemisphaerica|type=transcript|length=353bp|location=Sequence derived from alignment at sc0001428:23377..23729- (Clytia hemisphaerica)
TACTGAACGTGAGTCCTATCCTGAGAAAAACGAATACACTCCTGGAATGC
ATGTAGCAGCTGCATGGCTAAAGGAGGATAGCACAGAATATACATGGTAT
TTAGGCGAGTTAGGTTGCAATGGAACATTTTTTCATCTTTTTTCCAGTTT
AGTTTAGAACCATGCTAACTGTTCTCTTTTCATTCATAGGTGTGTTAGAT
TCAGTTGACAATGATTGCTTGAAAGTTTCTTATTTCTCAAGAAAGGACAA
AGCTGGCAGCCAATGGACATTCCCAGAGGAAGCAGACATTCAAAATACAA
AGTGTGAACAAATTATTAAAATAGTGGAAAAGGTTGCTTAGCAGTGCACC
GTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021310XLOC_021310Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036229-exon-sc0001428-1575043694:23626..23729TCONS_00036229-exon-sc0001428-1575043694:23626..23729Clytia hemisphaericaexon
TCONS_00036229-exon-sc0001428-1575043694:23377..23540TCONS_00036229-exon-sc0001428-1575043694:23377..23540Clytia hemisphaericaexon
TCONS_00036229-exon-sc0001428-1510915933:23626..23729TCONS_00036229-exon-sc0001428-1510915933:23626..23729Clytia hemisphaericaexon
TCONS_00036229-exon-sc0001428-1510915933:23377..23540TCONS_00036229-exon-sc0001428-1510915933:23377..23540Clytia hemisphaericaexon
TCONS_00036229-exon-sc0001428-1491911889:23626..23729TCONS_00036229-exon-sc0001428-1491911889:23626..23729Clytia hemisphaericaexon
TCONS_00036229-exon-sc0001428-1491911889:23377..23540TCONS_00036229-exon-sc0001428-1491911889:23377..23540Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001428supercontigsc0001428:23377..23729 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.42816	1.24718	1.93803	0	1.47924	2.15187	0.000803976	0	0	0.590844	2.39798	1.21465	2.24115	1.58945	0.710752	0.75318	1.34617	0	0.64872	0.74554	0.825087	0	0	2.05467	0	0.799661	0	0.647289	1.63898
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036229 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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