TCONS_00036228 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036228
Unique NameTCONS_00036228
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2971

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036228 ID=TCONS_00036228|Name=TCONS_00036228|organism=Clytia hemisphaerica|type=transcript|length=2971bp
accaaaataattATTATCTATTTAGGATCTATacatattttttccatttt
gcaCAACAAGTTTGcacacatttttgtttttgtttatattttcgtTCCGA
TATAGAAATGACGTCAAATGAAAGTTCGATTTTCTGTTtatgtttcttat
aagaaatttcaagaaattgtaaaagaaacaaaaattggaaGAGCGATATA
AAAGTGCAGAAAATGCATATTTTCTGAACCTTCTCCCCATATTTTGACTC
TAAAATCATCTGACTAAAGGTCGTCTACAATCCCACCCAAATTATTTGAG
ACAAAGAGAATTTCCCTGAAATTTCCGCGAAATTTTaaaggaccttagga
tctcaggatttaaaagctcaaaattgtttcgatcaggcttggaatatagc
ccaGAAATCACCGAACccgtcaaaaatcaaaatattcaatggaagaaagt
ggaagtgctaaaatagcaattctcaccagaactttaaattttgaaaaacg
ctaaaatacaGAGTATCAGTGTAGTTTATTTTGATTATCTCGTCTATACT
AAAGGCTGTAGTAACACACAAAACCACACGCCAACTTTATCGGCTGACAC
GAAATCTATGTACAAAAATCCAATCAAATTCCAAGCAAGTATCAGGCCAA
GACACAGGTTACTTACAAAATTTAAGGAACTGAATAACGAGGTTAGAAGG
GTTGGGGACGAGTTGAATTATAAAGTTAGATGACTCGGGCATCAGTTGAA
TAAAACGGTTAGAGGGCTTGGGCACCAGTTGAACTATGAGGTTAGAGGGC
TTGGGCACGAGTTGAATAAAACGGTTAGAGGGCTTGGGCACCAGTTGAAC
TATGAGGTTAGAGGGCTTGAGCACGAGATGAACTATGAGGTTAGAGGGCT
TGGGCACGAGTTGAATAAAACGGTTAGAGGGCTTGGGCACGAGTTGAATA
AAAAGGTTAGAGGGCTTGGGCACGAGTTGAATAAAACGGTTAGAGGGCTT
GGGCACGAGATGAACTATAAAGCTAGAGGGCTTGGGCACGAGTTGAATTA
TAAAGTTAGAGGGCTTGGGCACGAGTTGAATAAAACGGTTAGAGGGCTTG
GGCACGAGATGAACTATAAAGCTAGAGGGCTTGGGCACGAGTTGAATTAT
AAAGTTAGAGGGCTTGGGCACGAGTTGAATTATAAAGTTAGAGGGCTTGG
GCACCACTTGAACTATGAAGCTAGAGGGCTTGGGCACGAGTTGAATTATA
AAGTTAGATGGCTTGGGGACGAGTTGAATTATAAAGTTAGATGGCTCGGG
CATCAGTTGAATAAAACGGTTAGAGGGCTCGGGCATCAGTTGAATAAAAC
GGTTAGAGGGCTTGGGCACCAGTTGAACTATGAGGTTAGAGGGCTTGGGC
ACCAGTTGAACTATGAGGTTAGAGGGCTTGGGCACCAGTTGAACTATGAG
GTTAGAGGGCTTGGGCACGAGATGAACTATGAGGTTAGAGGGCTTGGGCA
CGAGTTGAATAAAACGGTTAGAGGGCTTGGGCACGAGATGAACTATAAAG
CTAGAGGGCTTGGGCACGAGTTGAATTATAAAGTTAGATGGCTTGGGCAC
GAGTTGAATTATAAAGTTAGATGGCTTGGGCACGAGTTGAATTATAAAGT
TAGATGGCTTGGGCACGAGTTGAATTATAAAGTTAGATGGCTTGGGCACG
AGTTGAATTATAAAGTTAGATGGCTTGGGCACGAGTTGAATTATAAAGTT
AGATGGCTTGGGCACGAGTTGAATTATAAAGTTAGATGGCTTGGGCACGA
GATGAACTATAAAGCTAGAGGGCTTGGGCACGAGTTGAATTATAAAGTTA
GAGGGCTTGGGCACCAGTTGAACTATAAAGTTAGATGGCTTGGGCACCAG
TTAAATTATAAAGCTAGAGGGTTGAATTATGAGGTTAAAGGGCACAAATC
GAAATTCGAAATTAGAAGCTTGAATATATTCTTGAACAGTACTTAAACTT
AGAAGTTAGAGGACCCGGACATGGGTTGAATCACGAACATTTCAAAGCAA
AACCCAGAGTGTTACAATCAACGCCTCTTTCTCTGTTCTCTCTACTAGAG
TGTTATTGTCGTTCACACAATTGTGAGGGGAAAACTGTGTCACGGAAGAC
CTTAACTCGCCATGCCAAGGATGATTCCAGTCTTTTAAAAGAGTTGAACG
ACCGATCAAAAGAACAGACGCCTCACTACACCAGACGAATCAACTTCGAC
GAGTCCCTTTACACCACAAGCGAAGTTGCTAAAACAGAACTATATCCTGG
GTCAAAACTAAGTGTACTAGCTGCAATATTCGTTAGAATGAGAATTTTGG
TATCGCACCCTTATTCTACTAAAGCACAACTCGACGAGACATTTCGAACA
GATAATTCCCTCATGCTTCCTGAAGAAAATCAAATGCCAAAGACGTACGA
CGAAGCAAGGCGATTAATCCAACCATTCCTCTTACCCCTAGAGAAATACG
ACTGTTGCATTGATGATTGCATGTTATTTAGGGGTAAGAACGCCAACGCA
AAGGATTGCATTATATGTGGAAAAGCAAGATTTGATGCCAATGGGAGGCC
AAAGCGAACATTCAAATATTTTCCTCTTGGTCCACGCTTAGCACGAATGA
TTGCGTCGCCAGAATTTTCGGAATTGTTAGAAGTGAAAGAAGTGGCAGAG
GAAGGGCCTGTGATTGATATTCAGGACACAAGTACGTGGAAGGAGTGGTT
CACCAAAGATGGTCACTTTGGAGGAAGAGCTGGTATCGCATTATCATTTT
GCACCGATGGAGTCAATCCACTGAAATCCTTGGATAAAGAGTATTCAATG
TGGCCGCTGATGATACAAGTTTTGAATTTCCCACCCGCCTTTCGAAAAAA
CTTTGCAGGAATTCAGTTGCTTGGCATTATTCCAGGAAACGGAACCAAGG
AGCCTAAACATCTGGAGCCAT
Run BLAST on NCBI

protein sequence of TCONS_00036228-protein

>TCONS_00036228-protein ID=TCONS_00036228-protein|Name=TCONS_00036228-protein|organism=Clytia hemisphaerica|type=polypeptide|length=372bp
MNYEVRGLGHELNKTVRGLGHELNKKVRGLGHELNKTVRGLGHEMNYKAR
GLGHELNYKVRGLGHELNKTVRGLGHEMNYKARGLGHELNYKVRGLGHEL
NYKVRGLGHHLNYEARGLGHELNYKVRWLGDELNYKVRWLGHQLNKTVRG
LGHQLNKTVRGLGHQLNYEVRGLGHQLNYEVRGLGHQLNYEVRGLGHEMN
YEVRGLGHELNKTVRGLGHEMNYKARGLGHELNYKVRWLGHELNYKVRWL
GHELNYKVRWLGHELNYKVRWLGHELNYKVRWLGHELNYKVRWLGHELNY
KVRWLGHEMNYKARGLGHELNYKVRGLGHQLNYKVRWLGHQLNYKARGLN
YEVKGHKSKFEIRSLNIFLNST
Run BLAST on NCBI

transcript from alignment at sc0001428:3..3189-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036228 ID=TCONS_00036228|Name=TCONS_00036228|organism=Clytia hemisphaerica|type=transcript|length=3187bp|location=Sequence derived from alignment at sc0001428:3..3189- (Clytia hemisphaerica)
ACCAAAATAATTATTATCTATTTAGGATCTATACATATTTTTTCCATTTT
GCACAACAAGTTTGCACACATTTTTGTTTTTGTTTATATTTTCGTTCCGA
TATAGAAATGACGTCAAATGAAAGTTCGATTTTCTGTTTATGTTTCTTAT
AAGAAATTTCAAGAAATTGTAAAAGAAACAAAAATTGGAAGAGCGATATA
AAAGTGCAGAAAATGCATATTTTCTGAACCTTCTCCCCATATTTTGACTC
TAAAATCATCTGACTAAAGGTCGTCTACAATCCCACCCAAATTATTTGAG
ACAAAGAGAATTTCCCTGAAATTTCCGCGAAATTTTAAAGGACCTTAGGA
TCTCAGGATTTAAAAGCTCAAAATTGTTTCGATCAGGCTTGGAATATAGC
CCAGAAATCACCGAACCCGTCAAAAATCAAAATATTCAATGGAAGAAAGT
GGAAGTGCTAAAATAGCAATTCTCACCAGAACTTTAAATTTTGAAAAACG
CTAAAATACAGAGTATCAGTGTAGTTTATTTTGATTATCTCGTCTATACT
AAAGGCTGTAGTAACACACAAAACCACACGCCAACTTTATCGGCTGACAC
GAAATCTATGTACAAAAATCCAATCAAATTCCAAGCAAGTATCAGGCCAA
GACACAGGTTACTTACAAAATTTAAGGAACTGAATAACGAGGTTAGAAGG
GTTGGGGACGAGTTGAATTATAAAGTTAGATGACTCGGGCATCAGTTGAA
TAAAACGGTTAGAGGGCTTGGGCACCAGTTGAACTATGAGGTTAGAGGGC
TTGGGCACGAGTTGAATAAAACGGTTAGAGGGCTTGGGCACCAGTTGAAC
TATGAGGTTAGAGGGCTTGAGCACGAGATGAACTATGAGGTTAGAGGGCT
TGGGCACGAGTTGAATAAAACGGTTAGAGGGCTTGGGCACGAGTTGAATA
AAAAGGTTAGAGGGCTTGGGCACGAGTTGAATAAAACGGTTAGAGGGCTT
GGGCACGAGATGAACTATAAAGCTAGAGGGCTTGGGCACGAGTTGAATTA
TAAAGTTAGAGGGCTTGGGCACGAGTTGAATAAAACGGTTAGAGGGCTTG
GGCACGAGATGAACTATAAAGCTAGAGGGCTTGGGCACGAGTTGAATTAT
AAAGTTAGAGGGCTTGGGCACGAGTTGAATTATAAAGTTAGAGGGCTTGG
GCACCACTTGAACTATGAAGCTAGAGGGCTTGGGCACGAGTTGAATTATA
AAGTTAGATGGCTTGGGGACGAGTTGAATTATAAAGTTAGATGGCTCGGG
CATCAGTTGAATAAAACGGTTAGAGGGCTCGGGCATCAGTTGAATAAAAC
GGTTAGAGGGCTTGGGCACCAGTTGAACTATGAGGTTAGAGGGCTTGGGC
ACCAGTTGAACTATGAGGTTAGAGGGCTTGGGCACCAGTTGAACTATGAG
GTTAGAGGGCTTGGGCACGAGATGAACTATGAGGTTAGAGGGCTTGGGCA
CGAGTTGAATAAAACGGTTAGAGGGCTTGGGCACGAGATGAACTATAAAG
CTAGAGGGCTTGGGCACGAGTTGAATTATAAAGTTAGATGGCTTGGGCAC
GAGTTGAATTATAAAGTTAGATGGCTTGGGCACGAGTTGAATTATAAAGT
TAGATGGCTTGGGCACGAGTTGAATTATAAAGTTAGATGGCTTGGGCACG
AGTTGAATTATAAAGTTAGATGGCTTGGGCACGAGTTGAATTATAAAGTT
AGATGGCTTGGGCACGAGTTGAATTATAAAGTTAGATGGCTTGGGCACGA
GATGAACTATAAAGCTAGAGGGCTTGGGCACGAGTTGAATTATAAAGTTA
GAGGGCTTGGGCACCAGTTGAACTATAAAGTTAGATGGCTTGGGCACCAG
TTAAATTATAAAGCTAGAGGGTTGAATTATGAGGTTAAAGGGCACAAATC
GAAATTCGAAATTAGAAGCTTGAATATATTCTTGAACAGTACTTAAACTT
AGAAGTTAGAGGACCCGGACATGGGTTGAATCACGAACATTTCAAAGCAA
AACCCAGAGTGTTACAATCAACGCCTCTTTCTCTGTTCTCTCTACTAGAG
TGTTATTGTCGTTCACACAATTGTGAGGGGAAAACTGTGTCACGGAAGAC
CTTAACTCGCCATGCCAAGGATGATTCCAGTCTTTTAAAAGAGTTGAACG
ACCGATCAAAAGAACAGACGCCTCACTACACCAGACGAATCAACTTCGAC
GAGTCCCTTTACACCACAAGCGAAGTTGCTAAAACAGAACTATATCCTGG
GTCAAAACTAAGTGTACTAGCTGCAATATTCGTTAGAATGAGAATTTTGG
TATCGCACCCTTATTCTACTAAAGCACAACTCGACGAGACATTTCGAACA
GATAATTCCCTCATGCTTCCTGAAGAAAATCAAATGCCAAAGACGTACGA
CGAAGCAAGGCGATTAATCCAACCATTCCTCTTACCCCTAGAGAAATACG
ACTGTTGCATTGATGATTGCATGTTATTTAGGGGTAAGAACGCCAACGCA
AAGGATTGCATTATATGTGGAAAAGCAAGATTTGATGCCAATGGGAGGCC
AAAGCGAACATTCAAATATTTTCCTCTTGGTCCACGCTTAGCACGAATGA
TTGCGTCGCCAGAATTTTCGGAATTGTTAGAAGTGAAAGAAGTGGCAGAG
GAAGGGCCTGTGATTGATATTCAGGACACAAGTACGTGGAAGGAGTGGTT
CACCAAAGATGGTCACTTTGGAGGAAGAGCTGGTAAGTTCAGCAATAACC
GCTAAAATGATTTTTTTAGAGCAATTCAAAATAATACATCCAAAATATCT
TTAGTCCTCAAACATGTGTTACGCAATCACAGACTCCAATCTAATGTCTT
CAACAAATAATTTTCGAAAAAAAAAATCTATAAATAAACAATCTCCCTAT
TTTCTCGAATATAAGCATTTATAAGTTGCTTTACTTTTGCAATATCAGGT
ATCGCATTATCATTTTGCACCGATGGAGTCAATCCACTGAAATCCTTGGA
TAAAGAGTATTCAATGTGGCCGCTGATGATACAAGTTTTGAATTTCCCAC
CCGCCTTTCGAAAAAACTTTGCAGGAATTCAGTTGCTTGGCATTATTCCA
GGAAACGGAACCAAGGAGCCTAAACATCTGGAGCCAT

Coding sequence (CDS) from alignment at sc0001428:3..3189-

>TCONS_00036228 ID=TCONS_00036228|Name=TCONS_00036228|organism=Clytia hemisphaerica|type=CDS|length=1119bp|location=Sequence derived from alignment at sc0001428:3..3189- (Clytia hemisphaerica)
ATGAACTATGAGGTTAGAGGGCTTGGGCACGAGTTGAATAAAACGGTTAG
AGGGCTTGGGCACGAGTTGAATAAAAAGGTTAGAGGGCTTGGGCACGAGT
TGAATAAAACGGTTAGAGGGCTTGGGCACGAGATGAACTATAAAGCTAGA
GGGCTTGGGCACGAGTTGAATTATAAAGTTAGAGGGCTTGGGCACGAGTT
GAATAAAACGGTTAGAGGGCTTGGGCACGAGATGAACTATAAAGCTAGAG
GGCTTGGGCACGAGTTGAATTATAAAGTTAGAGGGCTTGGGCACGAGTTG
AATTATAAAGTTAGAGGGCTTGGGCACCACTTGAACTATGAAGCTAGAGG
GCTTGGGCACGAGTTGAATTATAAAGTTAGATGGCTTGGGGACGAGTTGA
ATTATAAAGTTAGATGGCTCGGGCATCAGTTGAATAAAACGGTTAGAGGG
CTCGGGCATCAGTTGAATAAAACGGTTAGAGGGCTTGGGCACCAGTTGAA
CTATGAGGTTAGAGGGCTTGGGCACCAGTTGAACTATGAGGTTAGAGGGC
TTGGGCACCAGTTGAACTATGAGGTTAGAGGGCTTGGGCACGAGATGAAC
TATGAGGTTAGAGGGCTTGGGCACGAGTTGAATAAAACGGTTAGAGGGCT
TGGGCACGAGATGAACTATAAAGCTAGAGGGCTTGGGCACGAGTTGAATT
ATAAAGTTAGATGGCTTGGGCACGAGTTGAATTATAAAGTTAGATGGCTT
GGGCACGAGTTGAATTATAAAGTTAGATGGCTTGGGCACGAGTTGAATTA
TAAAGTTAGATGGCTTGGGCACGAGTTGAATTATAAAGTTAGATGGCTTG
GGCACGAGTTGAATTATAAAGTTAGATGGCTTGGGCACGAGTTGAATTAT
AAAGTTAGATGGCTTGGGCACGAGATGAACTATAAAGCTAGAGGGCTTGG
GCACGAGTTGAATTATAAAGTTAGAGGGCTTGGGCACCAGTTGAACTATA
AAGTTAGATGGCTTGGGCACCAGTTAAATTATAAAGCTAGAGGGTTGAAT
TATGAGGTTAAAGGGCACAAATCGAAATTCGAAATTAGAAGCTTGAATAT
ATTCTTGAACAGTACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021309XLOC_021309Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036228-proteinTCONS_00036228-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036228-exon-sc0001428-1575043694:408..3189TCONS_00036228-exon-sc0001428-1575043694:408..3189Clytia hemisphaericaexon
TCONS_00036228-exon-sc0001428-1575043694:3..191TCONS_00036228-exon-sc0001428-1575043694:3..191Clytia hemisphaericaexon
TCONS_00036228-exon-sc0001428-1510915933:408..3189TCONS_00036228-exon-sc0001428-1510915933:408..3189Clytia hemisphaericaexon
TCONS_00036228-exon-sc0001428-1510915933:3..191TCONS_00036228-exon-sc0001428-1510915933:3..191Clytia hemisphaericaexon
TCONS_00036228-exon-sc0001428-1491911889:408..3189TCONS_00036228-exon-sc0001428-1491911889:408..3189Clytia hemisphaericaexon
TCONS_00036228-exon-sc0001428-1491911889:3..191TCONS_00036228-exon-sc0001428-1491911889:3..191Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001428supercontigsc0001428:3..3189 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.407147	0	0	0	8.9272e-08	0	8.85771e-08	0.497024	0.39827	5.00588e-08	0	0.0412027	5.79442e-09	0.362848	1.73602	2.24434	2.29389	3.21336	2.56363	3.79577	2.20602	2.87505	0	1.71028	8.24742e-10	3.78028e-09	2.51274e-08	0.705532	1.56528	1.1128
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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