TCONS_00036227 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036227
Unique NameTCONS_00036227
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036227 ID=TCONS_00036227|Name=TCONS_00036227|organism=Clytia hemisphaerica|type=transcript|length=338bp
GGTGCCACTTGCGGTGCTATCATTTGTTGTGGTCCCACCACTGGCATCGA
AGGTAAAGAAACCATTCCCACGTGCTGCTCACGTGGTTGGATATGGTATG
GAATATGAGTGTTTGTTGGCGCCGTTGGTGGTATGGGTGGCTTGGTTTCG
ACTACAGGTTGGGCGGGAGGAGGTGGAGGTGCCACATGTTGGTGTTGCTG
CTGTTGGCGTGATGTTGCTAATGTGATTTCAGCAAGATGTAGCTTGTTTT
GAAGATCGTGGATGTCTTGTTGTAAGTTTGACCTGATCTCCTCTGTTTCT
GTGCGAGCTCTCACAACCTAAAAAAATCGCAAAGAAAT
Run BLAST on NCBI

transcript from alignment at sc0001428:42441..42844+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036227 ID=TCONS_00036227|Name=TCONS_00036227|organism=Clytia hemisphaerica|type=transcript|length=404bp|location=Sequence derived from alignment at sc0001428:42441..42844+ (Clytia hemisphaerica)
GGTGCCACTTGCGGTGCTATCATTTGTTGTGGTCCCACCACTGGCATCGA
AGGTAAAGAAACCANCGGTGCTGCTTGCGGCGCCATCATTTGTTGTGGAC
CCACCACTGGCATCGAAGGTAAAGAAACCATTCCCACGTGCTGCTCACGT
GGTTGGATATGGTATGGAATATGAGTGTTTGTTGGCGCCGTTGGTGGTAT
GGGTGGCTTGGTTTCGACTACAGGTTGGGCGGGAGGAGGTGGAGGTGCCA
CATGTTGGTGTTGCTGCTGTTGGCGTGATGTTGCTAATGTGATTTCAGCA
AGATGTAGCTTGTTTTGAAGATCGTGGATGTCTTGTTGTAAGTTTGACCT
GATCTCCTCTGTTTCTGTGCGAGCTCTCACAACCTAAAAAAATCGCAAAG
AAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021308XLOC_021308Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036227-exon-sc0001428-1491911889:42441..42492TCONS_00036227-exon-sc0001428-1491911889:42441..42492Clytia hemisphaericaexon
TCONS_00036227-exon-sc0001428-1510915933:42441..42492TCONS_00036227-exon-sc0001428-1510915933:42441..42492Clytia hemisphaericaexon
TCONS_00036227-exon-sc0001428-1575043694:42441..42492TCONS_00036227-exon-sc0001428-1575043694:42441..42492Clytia hemisphaericaexon
TCONS_00036227-exon-sc0001428-1491911889:42559..42844TCONS_00036227-exon-sc0001428-1491911889:42559..42844Clytia hemisphaericaexon
TCONS_00036227-exon-sc0001428-1510915933:42559..42844TCONS_00036227-exon-sc0001428-1510915933:42559..42844Clytia hemisphaericaexon
TCONS_00036227-exon-sc0001428-1575043694:42559..42844TCONS_00036227-exon-sc0001428-1575043694:42559..42844Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001428supercontigsc0001428:42441..42844 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.351228	0.172582	0	0.571841	0	0	2.55632	3.8455	1.46636	0	1.33249	1.05878	2.09939	2.36277	0	2.99719	5.83106	7.24668	0	0	1.8588	5.35077	1.50426	1.18106	4.24212	11.2918	0.725094	0.994783	0.399729	0.0829475
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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