TCONS_00036216 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036216
Unique NameTCONS_00036216
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2936

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036216 ID=TCONS_00036216|Name=TCONS_00036216|organism=Clytia hemisphaerica|type=transcript|length=2936bp
TCCAGATGTTTAGGCTCCTTGGTTCCGTTTCCTGGAATAATGCCAAGCAA
CTGAATTCCTGCAAAGTTTTTTCGAAAGGCGGGTGGGAAATTCAAAACTT
GTATCATCAGCGGCCACATTGAATACTCTTTATCCAAGGATTTCAGTGGA
TTGACTCCATCGGTGCAAAATGATAATGCGTTACCAGCTCTTCCTCCAAA
GTGACCATCTTTGGTGAACCACTCCTTCCACGTACTTGTGTCCTGAATAT
CAATCACAGGCCCTTCCTCTGCCACTTCTTTCACTTCTAACAATTCCGAA
AATTCTGGCGACGCAATCATTCGTGCTAAGCGTGGACCAAGAGGAAAATA
TTTGAATGTTCGCTTTGGCCTCCCATTGGCATCAAATCTTGCTTTTCCAC
ATATAATGCAATCCTTTGCGTTGGCGTTCTTACCCCTAAATAACATGCAA
TCATCAATGCAACAGTCGTATTTCTCTAGGGGTAAGAGGAATGGTTGGAT
TAATCGCCTTGCTTCGTCGTACGTCTTTGGCATTTGATTTTCTTCAGGAA
GCATGAGGGAATTATCTGTTCGAAATGTCTCGTCGAGTTGTGCTTTAGTA
GAATAAGGGTGCGATACCAAAATTCTCATTCTAACGAATATTGCAGCTAG
TACACTTAGTTTTGACCCAGGATATAGTTCTGTTTTAGCAACTTCGCTTG
TGGTGTAAAGGGACTCGTCGAAGTTGATTCGTCTGGTGTAGTGAGGCGTC
TGTTCTTTTGATCGGTCGTTCAACTCTTTTAAAAGACTGGAATCATCCTT
GGCATGGCGAGTTAAGGTCTTCCGTGACACAGTTTTCCCCTCACAATTGT
GTGAACGACAATAACACTCTAGTAGAGAGAACAGAGAAAGAGGCGTTGAT
TGTAACACTCTGGGTTTTGCTTTGAAATGTTCGTGATTCAACCCATGTCC
GGGTCCTCTAACTTCTAAGTTTAAGTACTGTTCAAGAATATATTCAAGCT
TCTAATTTCGAATTTCGATTTGTGCCCTTTAACCTCATAATTCAACCCTC
TAGCTTTATAATTTAACTGGTGCCCAAGCCATCTAACTTTATAGTTCAAC
TGGTGCCCAAGCCCTCTAACTTTATAATTCAACTCGTGCCCAAGCCCTCT
AGCTTTATAGTTCATCTCGTGCCCAAGCCATCTAACTTTATAATTCAACT
CGTGCCCAAGCCATCTAACTTTATAATTCAACTCGTGCCCAAGCCATCTA
ACTTTATAATTCAACTCGTGCCCAAGCCATCTAACTTTATAATTCAACTC
GTGCCCAAGCCATCTAACTTTATAATTCAACTCGTGCCCAAGCCATCTAA
CTTTATAATTCAACTCGTGCCCAAGCCATCTAACTTTATAATTCAACTCG
TGCCCAAGCCCTCTAGCTTTATAGTTCATCTCGTGCCCAAGCCCTCTAAC
CGTTTTATTCAACTCGTGCCCAAGCCCTCTAACCTCATAGTTCATCTCGT
GCCCAAGCCCTCTAACCTCATAGTTCAACTGGTGCCCAAGCCCTCTAACC
TCATAGTTCAACTGGTGCCCAAGCCCTCTAACCTCATAGTTCAACTGGTG
CCCAAGCCCTCTAACCGTTTTATTCAACTGATGCCCGAGCCCTCTAACCG
TTTTATTCAACTGATGCCCGAGCCATCTAACTTTATAATTCAACTCGTCC
CCAAGCCATCTAACTTTATAATTCAACTCGTGCCCAAGCCCTCTAGCTTC
ATAGTTCAAGTGGTGCCCAAGCCCTCTAACTTTATAATTCAACTCGTGCC
CAAGCCCTCTAACTTTATAATTCAACTCGTGCCCAAGCCCTCTAGCTTTA
TAGTTCATCTCGTGCCCAAGCCCTCTAACCGTTTTATTCAACTCGTGCCC
AAGCCCTCTAACTTTATAATTCAACTCGTGCCCAAGCCCTCTAGCTTTAT
AGTTCATCTCGTGCCCAAGCCCTCTAACCGTTTTATTCAACTCGTGCCCA
AGCCCTCTAACCTTTTTATTCAACTCGTGCCCAAGCCCTCTAACCGTTTT
ATTCAACTCGTGCCCAAGCCCTCTAACCTCATAGTTCATCTCGTGCTCAA
GCCCTCTAACCTCATAGTTCAACTGGTGCCCAAGCCCTCTAACCGTTTTA
TTCAACTCGTGCCCAAGCCCTCTAACCTCATAGTTCAACTGGTGCCCAAG
CCCTCTAACCGTTTTATTCAACTGATGCCCGAGTCATCTAACTTTATAAT
TCAACTCGTCCCCAACCCTTCTAACCTCGTTATTCAGTTCCTTAAATTTT
GTAAGTAACCTGTGTCTTGGCCTGATACTTGCTTGGAATTTGATTGGATT
TTTGTACATAGATTTCGTGTCAGCCGATAAAGTTGGCGTGTGGTTTTGTG
TGTTACTACAGCCTTTAGTATAGACGAGATAATCAAAATAAACTACACTG
ATACTCtgtattttagcgtttttcaaaatttaaagttctggtgagaattg
ctattttagcacttccactttcttccattgaatattttgatttttgacgg
GTTCGGTGATTTCtgggctatattccaagcctgatcgaaacaattttgag
cttttaaatcctgagatcctaaggtcctttAAAATTTCGCGGAAATTTCA
GGGAAATTCTCTTTGTCTCAAATAATTTGGGTGGGATTGTAGACGACCTT
TAGTCAGATGATTTTAGAGTCAAAATATGGGGAGAAGGTTCAGAAAATAT
GCATTTTCTGCACTTTTATATCGCTCttccaatttttgtttcttttacaa
tttcttgaaatttcttataagaaacataAACAGAAAATCGAACTTTCATT
TGACGTCATTTCTATATCGGAacgaaaatataaacaaaaacaaaaatgtg
tgCAAACTTGTTGtgcaaaatggaaaaaatatgtAT
Run BLAST on NCBI

transcript from alignment at sc0001428:8..3159+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036216 ID=TCONS_00036216|Name=TCONS_00036216|organism=Clytia hemisphaerica|type=transcript|length=3152bp|location=Sequence derived from alignment at sc0001428:8..3159+ (Clytia hemisphaerica)
TCCAGATGTTTAGGCTCCTTGGTTCCGTTTCCTGGAATAATGCCAAGCAA
CTGAATTCCTGCAAAGTTTTTTCGAAAGGCGGGTGGGAAATTCAAAACTT
GTATCATCAGCGGCCACATTGAATACTCTTTATCCAAGGATTTCAGTGGA
TTGACTCCATCGGTGCAAAATGATAATGCGATACCTGATATTGCAAAAGT
AAAGCAACTTATAAATGCTTATATTCGAGAAAATAGGGAGATTGTttatt
tatagattttttttttcgaaaattatttgtTGAAGACATTAGATTGGAGT
CTGTGATTGCGTAACACATGTTTGAGGACTAAAGATATTTTGGATGTATT
ATTTTGAATTGctctaaaaaaatcattttagcGGTTATTGCTGAACTTAC
CAGCTCTTCCTCCAAAGTGACCATCTTTGGTGAACCACTCCTTCCACGTA
CTTGTGTCCTGAATATCAATCACAGGCCCTTCCTCTGCCACTTCTTTCAC
TTCTAACAATTCCGAAAATTCTGGCGACGCAATCATTCGTGCTAAGCGTG
GACCAAGAGGAAAATATTTGAATGTTCGCTTTGGCCTCCCATTGGCATCA
AATCTTGCTTTTCCACATATAATGCAATCCTTTGCGTTGGCGTTCTTACC
CCTAAATAACATGCAATCATCAATGCAACAGTCGTATTTCTCTAGGGGTA
AGAGGAATGGTTGGATTAATCGCCTTGCTTCGTCGTACGTCTTTGGCATT
TGATTTTCTTCAGGAAGCATGAGGGAATTATCTGTTCGAAATGTCTCGTC
GAGTTGTGCTTTAGTAGAATAAGGGTGCGATACCAAAATTCTCATTCTAA
CGAATATTGCAGCTAGTACACTTAGTTTTGACCCAGGATATAGTTCTGTT
TTAGCAACTTCGCTTGTGGTGTAAAGGGACTCGTCGAAGTTGATTCGTCT
GGTGTAGTGAGGCGTCTGTTCTTTTGATCGGTCGTTCAACTCTTTTAAAA
GACTGGAATCATCCTTGGCATGGCGAGTTAAGGTCTTCCGTGACACAGTT
TTCCCCTCACAATTGTGTGAACGACAATAACACTCTAGTAGAGAGAACAG
AGAAAGAGGCGTTGATTGTAACACTCTGGGTTTTGCTTTGAAATGTTCGT
GATTCAACCCATGTCCGGGTCCTCTAACTTCTAAGTTTAAGTACTGTTCA
AGAATATATTCAAGCTTCTAATTTCGAATTTCGATTTGTGCCCTTTAACC
TCATAATTCAACCCTCTAGCTTTATAATTTAACTGGTGCCCAAGCCATCT
AACTTTATAGTTCAACTGGTGCCCAAGCCCTCTAACTTTATAATTCAACT
CGTGCCCAAGCCCTCTAGCTTTATAGTTCATCTCGTGCCCAAGCCATCTA
ACTTTATAATTCAACTCGTGCCCAAGCCATCTAACTTTATAATTCAACTC
GTGCCCAAGCCATCTAACTTTATAATTCAACTCGTGCCCAAGCCATCTAA
CTTTATAATTCAACTCGTGCCCAAGCCATCTAACTTTATAATTCAACTCG
TGCCCAAGCCATCTAACTTTATAATTCAACTCGTGCCCAAGCCATCTAAC
TTTATAATTCAACTCGTGCCCAAGCCCTCTAGCTTTATAGTTCATCTCGT
GCCCAAGCCCTCTAACCGTTTTATTCAACTCGTGCCCAAGCCCTCTAACC
TCATAGTTCATCTCGTGCCCAAGCCCTCTAACCTCATAGTTCAACTGGTG
CCCAAGCCCTCTAACCTCATAGTTCAACTGGTGCCCAAGCCCTCTAACCT
CATAGTTCAACTGGTGCCCAAGCCCTCTAACCGTTTTATTCAACTGATGC
CCGAGCCCTCTAACCGTTTTATTCAACTGATGCCCGAGCCATCTAACTTT
ATAATTCAACTCGTCCCCAAGCCATCTAACTTTATAATTCAACTCGTGCC
CAAGCCCTCTAGCTTCATAGTTCAAGTGGTGCCCAAGCCCTCTAACTTTA
TAATTCAACTCGTGCCCAAGCCCTCTAACTTTATAATTCAACTCGTGCCC
AAGCCCTCTAGCTTTATAGTTCATCTCGTGCCCAAGCCCTCTAACCGTTT
TATTCAACTCGTGCCCAAGCCCTCTAACTTTATAATTCAACTCGTGCCCA
AGCCCTCTAGCTTTATAGTTCATCTCGTGCCCAAGCCCTCTAACCGTTTT
ATTCAACTCGTGCCCAAGCCCTCTAACCTTTTTATTCAACTCGTGCCCAA
GCCCTCTAACCGTTTTATTCAACTCGTGCCCAAGCCCTCTAACCTCATAG
TTCATCTCGTGCTCAAGCCCTCTAACCTCATAGTTCAACTGGTGCCCAAG
CCCTCTAACCGTTTTATTCAACTCGTGCCCAAGCCCTCTAACCTCATAGT
TCAACTGGTGCCCAAGCCCTCTAACCGTTTTATTCAACTGATGCCCGAGT
CATCTAACTTTATAATTCAACTCGTCCCCAACCCTTCTAACCTCGTTATT
CAGTTCCTTAAATTTTGTAAGTAACCTGTGTCTTGGCCTGATACTTGCTT
GGAATTTGATTGGATTTTTGTACATAGATTTCGTGTCAGCCGATAAAGTT
GGCGTGTGGTTTTGTGTGTTACTACAGCCTTTAGTATAGACGAGATAATC
AAAATAAACTACACTGATACTCtgtattttagcgtttttcaaaatttaaa
gttctggtgagaattgctattttagcacttccactttcttccattgaata
ttttgatttttgacggGTTCGGTGATTTCtgggctatattccaagcctga
tcgaaacaattttgagcttttaaatcctgagatcctaaggtcctttAAAA
TTTCGCGGAAATTTCAGGGAAATTCTCTTTGTCTCAAATAATTTGGGTGG
GATTGTAGACGACCTTTAGTCAGATGATTTTAGAGTCAAAATATGGGGAG
AAGGTTCAGAAAATATGCATTTTCTGCACTTTTATATCGCTCttccaatt
tttgtttcttttacaatttcttgaaatttcttataagaaacataAACAGA
AAATCGAACTTTCATTTGACGTCATTTCTATATCGGAacgaaaatataaa
caaaaacaaaaatgtgtgCAAACTTGTTGtgcaaaatggaaaaaatatgt
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021305XLOC_021305Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036216-exon-sc0001428-1491911889:8..187TCONS_00036216-exon-sc0001428-1491911889:8..187Clytia hemisphaericaexon
TCONS_00036216-exon-sc0001428-1510915933:8..187TCONS_00036216-exon-sc0001428-1510915933:8..187Clytia hemisphaericaexon
TCONS_00036216-exon-sc0001428-1575043694:8..187TCONS_00036216-exon-sc0001428-1575043694:8..187Clytia hemisphaericaexon
TCONS_00036216-exon-sc0001428-1491911889:404..3159TCONS_00036216-exon-sc0001428-1491911889:404..3159Clytia hemisphaericaexon
TCONS_00036216-exon-sc0001428-1510915933:404..3159TCONS_00036216-exon-sc0001428-1510915933:404..3159Clytia hemisphaericaexon
TCONS_00036216-exon-sc0001428-1575043694:404..3159TCONS_00036216-exon-sc0001428-1575043694:404..3159Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001428supercontigsc0001428:8..3159 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	7.13538e-08	0	0	0.390319	0	0.323957	0	0	0.165325	0	0	0.242123	7.92432e-10	0	0	0	9.13108e-08	0	0	0.00116967	0	1.41091e-06	5.37944e-08	0.0141139	0.0638725	0.985101	3.79909e-09	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036216 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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