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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036215 ID=TCONS_00036215|Name=TCONS_00036215|organism=Clytia hemisphaerica|type=transcript|length=3155bp
GGCTCCAGATGTTTAGGCTCCTTGGTTCCGTTTCCTGGAATAATGCCAAG
CAACTGAATTCCTGCAAAGTTTTTTCGAAAGGCGGGTGGGAAATTCAAAA
CTTGTATCATCAGCGGCCACATTGAATACTCTTTATCCAAGGATTTCAGT
GGATTGACTCCATCGGTGCAAAATGATAATGCGATACCTGATATTGCAAA
AGTAAAGCAACTTATAAATGCTTATATTCGAGAAAATAGGGAGATTGTtt
atttatagattttttttttcgaaaattatttgtTGAAGACATTAGATTGG
AGTCTGTGATTGCGTAACACATGTTTGAGGACTAAAGATATTTTGGATGT
ATTATTTTGAATTGctctaaaaaaatcattttagcGGTTATTGCTGAACT
TACCAGCTCTTCCTCCAAAGTGACCATCTTTGGTGAACCACTCCTTCCAC
GTACTTGTGTCCTGAATATCAATCACAGGCCCTTCCTCTGCCACTTCTTT
CACTTCTAACAATTCCGAAAATTCTGGCGACGCAATCATTCGTGCTAAGC
GTGGACCAAGAGGAAAATATTTGAATGTTCGCTTTGGCCTCCCATTGGCA
TCAAATCTTGCTTTTCCACATATAATGCAATCCTTTGCGTTGGCGTTCTT
ACCCCTAAATAACATGCAATCATCAATGCAACAGTCGTATTTCTCTAGGG
GTAAGAGGAATGGTTGGATTAATCGCCTTGCTTCGTCGTACGTCTTTGGC
ATTTGATTTTCTTCAGGAAGCATGAGGGAATTATCTGTTCGAAATGTCTC
GTCGAGTTGTGCTTTAGTAGAATAAGGGTGCGATACCAAAATTCTCATTC
TAACGAATATTGCAGCTAGTACACTTAGTTTTGACCCAGGATATAGTTCT
GTTTTAGCAACTTCGCTTGTGGTGTAAAGGGACTCGTCGAAGTTGATTCG
TCTGGTGTAGTGAGGCGTCTGTTCTTTTGATCGGTCGTTCAACTCTTTTA
AAAGACTGGAATCATCCTTGGCATGGCGAGTTAAGGTCTTCCGTGACACA
GTTTTCCCCTCACAATTGTGTGAACGACAATAACACTCTAGTAGAGAGAA
CAGAGAAAGAGGCGTTGATTGTAACACTCTGGGTTTTGCTTTGAAATGTT
CGTGATTCAACCCATGTCCGGGTCCTCTAACTTCTAAGTTTAAGTACTGT
TCAAGAATATATTCAAGCTTCTAATTTCGAATTTCGATTTGTGCCCTTTA
ACCTCATAATTCAACCCTCTAGCTTTATAATTTAACTGGTGCCCAAGCCA
TCTAACTTTATAGTTCAACTGGTGCCCAAGCCCTCTAACTTTATAATTCA
ACTCGTGCCCAAGCCCTCTAGCTTTATAGTTCATCTCGTGCCCAAGCCAT
CTAACTTTATAATTCAACTCGTGCCCAAGCCATCTAACTTTATAATTCAA
CTCGTGCCCAAGCCATCTAACTTTATAATTCAACTCGTGCCCAAGCCATC
TAACTTTATAATTCAACTCGTGCCCAAGCCATCTAACTTTATAATTCAAC
TCGTGCCCAAGCCATCTAACTTTATAATTCAACTCGTGCCCAAGCCATCT
AACTTTATAATTCAACTCGTGCCCAAGCCCTCTAGCTTTATAGTTCATCT
CGTGCCCAAGCCCTCTAACCGTTTTATTCAACTCGTGCCCAAGCCCTCTA
ACCTCATAGTTCATCTCGTGCCCAAGCCCTCTAACCTCATAGTTCAACTG
GTGCCCAAGCCCTCTAACCTCATAGTTCAACTGGTGCCCAAGCCCTCTAA
CCTCATAGTTCAACTGGTGCCCAAGCCCTCTAACCGTTTTATTCAACTGA
TGCCCGAGCCCTCTAACCGTTTTATTCAACTGATGCCCGAGCCATCTAAC
TTTATAATTCAACTCGTCCCCAAGCCATCTAACTTTATAATTCAACTCGT
GCCCAAGCCCTCTAGCTTCATAGTTCAAGTGGTGCCCAAGCCCTCTAACT
TTATAATTCAACTCGTGCCCAAGCCCTCTAACTTTATAATTCAACTCGTG
CCCAAGCCCTCTAGCTTTATAGTTCATCTCGTGCCCAAGCCCTCTAACCG
TTTTATTCAACTCGTGCCCAAGCCCTCTAACTTTATAATTCAACTCGTGC
CCAAGCCCTCTAGCTTTATAGTTCATCTCGTGCCCAAGCCCTCTAACCGT
TTTATTCAACTCGTGCCCAAGCCCTCTAACCTTTTTATTCAACTCGTGCC
CAAGCCCTCTAACCGTTTTATTCAACTCGTGCCCAAGCCCTCTAACCTCA
TAGTTCATCTCGTGCTCAAGCCCTCTAACCTCATAGTTCAACTGGTGCCC
AAGCCCTCTAACCGTTTTATTCAACTCGTGCCCAAGCCCTCTAACCTCAT
AGTTCAACTGGTGCCCAAGCCCTCTAACCGTTTTATTCAACTGATGCCCG
AGTCATCTAACTTTATAATTCAACTCGTCCCCAACCCTTCTAACCTCGTT
ATTCAGTTCCTTAAATTTTGTAAGTAACCTGTGTCTTGGCCTGATACTTG
CTTGGAATTTGATTGGATTTTTGTACATAGATTTCGTGTCAGCCGATAAA
GTTGGCGTGTGGTTTTGTGTGTTACTACAGCCTTTAGTATAGACGAGATA
ATCAAAATAAACTACACTGATACTCtgtattttagcgtttttcaaaattt
aaagttctggtgagaattgctattttagcacttccactttcttccattga
atattttgatttttgacggGTTCGGTGATTTCtgggctatattccaagcc
tgatcgaaacaattttgagcttttaaatcctgagatcctaaggtcctttA
AAATTTCGCGGAAATTTCAGGGAAATTCTCTTTGTCTCAAATAATTTGGG
TGGGATTGTAGACGACCTTTAGTCAGATGATTTTAGAGTCAAAATATGGG
GAGAAGGTTCAGAAAATATGCATTTTCTGCACTTTTATATCGCTCttcca
atttttgtttcttttacaatttcttgaaatttcttataagaaacataAAC
AGAAAATCGAACTTTCATTTGACGTCATTTCTATATCGGAacgaaaatat
aaacaaaaacaaaaatgtgtgCAAACTTGTTGtgcaaaatggaaaaaata
tgtAT Run BLAST on NCBI transcript from alignment at sc0001428:5..3159+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036215 ID=TCONS_00036215|Name=TCONS_00036215|organism=Clytia hemisphaerica|type=transcript|length=3155bp|location=Sequence derived from alignment at sc0001428:5..3159+ (Clytia hemisphaerica)
GGCTCCAGATGTTTAGGCTCCTTGGTTCCGTTTCCTGGAATAATGCCAAG
CAACTGAATTCCTGCAAAGTTTTTTCGAAAGGCGGGTGGGAAATTCAAAA
CTTGTATCATCAGCGGCCACATTGAATACTCTTTATCCAAGGATTTCAGT
GGATTGACTCCATCGGTGCAAAATGATAATGCGATACCTGATATTGCAAA
AGTAAAGCAACTTATAAATGCTTATATTCGAGAAAATAGGGAGATTGTtt
atttatagattttttttttcgaaaattatttgtTGAAGACATTAGATTGG
AGTCTGTGATTGCGTAACACATGTTTGAGGACTAAAGATATTTTGGATGT
ATTATTTTGAATTGctctaaaaaaatcattttagcGGTTATTGCTGAACT
TACCAGCTCTTCCTCCAAAGTGACCATCTTTGGTGAACCACTCCTTCCAC
GTACTTGTGTCCTGAATATCAATCACAGGCCCTTCCTCTGCCACTTCTTT
CACTTCTAACAATTCCGAAAATTCTGGCGACGCAATCATTCGTGCTAAGC
GTGGACCAAGAGGAAAATATTTGAATGTTCGCTTTGGCCTCCCATTGGCA
TCAAATCTTGCTTTTCCACATATAATGCAATCCTTTGCGTTGGCGTTCTT
ACCCCTAAATAACATGCAATCATCAATGCAACAGTCGTATTTCTCTAGGG
GTAAGAGGAATGGTTGGATTAATCGCCTTGCTTCGTCGTACGTCTTTGGC
ATTTGATTTTCTTCAGGAAGCATGAGGGAATTATCTGTTCGAAATGTCTC
GTCGAGTTGTGCTTTAGTAGAATAAGGGTGCGATACCAAAATTCTCATTC
TAACGAATATTGCAGCTAGTACACTTAGTTTTGACCCAGGATATAGTTCT
GTTTTAGCAACTTCGCTTGTGGTGTAAAGGGACTCGTCGAAGTTGATTCG
TCTGGTGTAGTGAGGCGTCTGTTCTTTTGATCGGTCGTTCAACTCTTTTA
AAAGACTGGAATCATCCTTGGCATGGCGAGTTAAGGTCTTCCGTGACACA
GTTTTCCCCTCACAATTGTGTGAACGACAATAACACTCTAGTAGAGAGAA
CAGAGAAAGAGGCGTTGATTGTAACACTCTGGGTTTTGCTTTGAAATGTT
CGTGATTCAACCCATGTCCGGGTCCTCTAACTTCTAAGTTTAAGTACTGT
TCAAGAATATATTCAAGCTTCTAATTTCGAATTTCGATTTGTGCCCTTTA
ACCTCATAATTCAACCCTCTAGCTTTATAATTTAACTGGTGCCCAAGCCA
TCTAACTTTATAGTTCAACTGGTGCCCAAGCCCTCTAACTTTATAATTCA
ACTCGTGCCCAAGCCCTCTAGCTTTATAGTTCATCTCGTGCCCAAGCCAT
CTAACTTTATAATTCAACTCGTGCCCAAGCCATCTAACTTTATAATTCAA
CTCGTGCCCAAGCCATCTAACTTTATAATTCAACTCGTGCCCAAGCCATC
TAACTTTATAATTCAACTCGTGCCCAAGCCATCTAACTTTATAATTCAAC
TCGTGCCCAAGCCATCTAACTTTATAATTCAACTCGTGCCCAAGCCATCT
AACTTTATAATTCAACTCGTGCCCAAGCCCTCTAGCTTTATAGTTCATCT
CGTGCCCAAGCCCTCTAACCGTTTTATTCAACTCGTGCCCAAGCCCTCTA
ACCTCATAGTTCATCTCGTGCCCAAGCCCTCTAACCTCATAGTTCAACTG
GTGCCCAAGCCCTCTAACCTCATAGTTCAACTGGTGCCCAAGCCCTCTAA
CCTCATAGTTCAACTGGTGCCCAAGCCCTCTAACCGTTTTATTCAACTGA
TGCCCGAGCCCTCTAACCGTTTTATTCAACTGATGCCCGAGCCATCTAAC
TTTATAATTCAACTCGTCCCCAAGCCATCTAACTTTATAATTCAACTCGT
GCCCAAGCCCTCTAGCTTCATAGTTCAAGTGGTGCCCAAGCCCTCTAACT
TTATAATTCAACTCGTGCCCAAGCCCTCTAACTTTATAATTCAACTCGTG
CCCAAGCCCTCTAGCTTTATAGTTCATCTCGTGCCCAAGCCCTCTAACCG
TTTTATTCAACTCGTGCCCAAGCCCTCTAACTTTATAATTCAACTCGTGC
CCAAGCCCTCTAGCTTTATAGTTCATCTCGTGCCCAAGCCCTCTAACCGT
TTTATTCAACTCGTGCCCAAGCCCTCTAACCTTTTTATTCAACTCGTGCC
CAAGCCCTCTAACCGTTTTATTCAACTCGTGCCCAAGCCCTCTAACCTCA
TAGTTCATCTCGTGCTCAAGCCCTCTAACCTCATAGTTCAACTGGTGCCC
AAGCCCTCTAACCGTTTTATTCAACTCGTGCCCAAGCCCTCTAACCTCAT
AGTTCAACTGGTGCCCAAGCCCTCTAACCGTTTTATTCAACTGATGCCCG
AGTCATCTAACTTTATAATTCAACTCGTCCCCAACCCTTCTAACCTCGTT
ATTCAGTTCCTTAAATTTTGTAAGTAACCTGTGTCTTGGCCTGATACTTG
CTTGGAATTTGATTGGATTTTTGTACATAGATTTCGTGTCAGCCGATAAA
GTTGGCGTGTGGTTTTGTGTGTTACTACAGCCTTTAGTATAGACGAGATA
ATCAAAATAAACTACACTGATACTCtgtattttagcgtttttcaaaattt
aaagttctggtgagaattgctattttagcacttccactttcttccattga
atattttgatttttgacggGTTCGGTGATTTCtgggctatattccaagcc
tgatcgaaacaattttgagcttttaaatcctgagatcctaaggtcctttA
AAATTTCGCGGAAATTTCAGGGAAATTCTCTTTGTCTCAAATAATTTGGG
TGGGATTGTAGACGACCTTTAGTCAGATGATTTTAGAGTCAAAATATGGG
GAGAAGGTTCAGAAAATATGCATTTTCTGCACTTTTATATCGCTCttcca
atttttgtttcttttacaatttcttgaaatttcttataagaaacataAAC
AGAAAATCGAACTTTCATTTGACGTCATTTCTATATCGGAacgaaaatat
aaacaaaaacaaaaatgtgtgCAAACTTGTTGtgcaaaatggaaaaaata
tgtAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036215-exon-sc0001428-1491911889:5..3159 | TCONS_00036215-exon-sc0001428-1491911889:5..3159 | Clytia hemisphaerica | exon |
| TCONS_00036215-exon-sc0001428-1510915933:5..3159 | TCONS_00036215-exon-sc0001428-1510915933:5..3159 | Clytia hemisphaerica | exon |
| TCONS_00036215-exon-sc0001428-1575043694:5..3159 | TCONS_00036215-exon-sc0001428-1575043694:5..3159 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001428 | supercontig | sc0001428:5..3159 + |
Blast
The following BLAST results are available for this feature:
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