TCONS_00036213 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036213
Unique NameTCONS_00036213
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length616

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036213 ID=TCONS_00036213|Name=TCONS_00036213|organism=Clytia hemisphaerica|type=transcript|length=616bp
CTAAATATaagggaaaaattaagcataattctaatatcatttttatttat
tcgtttaaaaaacaaaaaactctgATTTCAGAGAACCCGTAGGTTTTTAT
CTCGATGCCACACAACTCTAGGCTATCGCCAGGTTCGCATTGCTGCGTTG
ACCCATTTTATACTTTCAGCCCAGCTTTCGAGAGTGCGGACTTACATCAG
CCCCTCTTTCCCTTTGATTGGATCCAGTCattttttttggagttttgatG
TGAACTCTACACAATCTCCGACagttgagttttgatgtgaacTCTTACAC
AATCTCCGtctgtttttgagtttttgatgtGAACTCTTACACAATTACCC
AAGCGTTGTCGATAGTATCATCTTCAACTTTCCGACACTTTTTCCgctca
ttttttgagttttgaactGACTCGACAGCTTTTTGTAATCTTGAACTTAC
TACGCATTAACGAAGCCACTTTTTGTGACAACTTTCAGAGGCCGTTTGGT
TCGCTGATTACTACCTGGGGCGCAGTCATTTCGTGGGTGTAGGCCAGTCT
ACTCAGCGCCCCAGGGGTGGATTTTTATCTAGATGAAGAGAGCCATACAC
CACTCTAGAATCTGAT
Run BLAST on NCBI

transcript from alignment at sc0001427:10204..10819

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036213 ID=TCONS_00036213|Name=TCONS_00036213|organism=Clytia hemisphaerica|type=transcript|length=616bp|location=Sequence derived from alignment at sc0001427:10204..10819 (Clytia hemisphaerica)
ATCAGATTCTAGAGTGGTGTATGGCTCTCTTCATCTAGATAAAAATCCAC
CCCTGGGGCGCTGAGTAGACTGGCCTACACCCACGAAATGACTGCGCCCC
AGGTAGTAATCAGCGAACCAAACGGCCTCTGAAAGTTGTCACAAAAAGTG
GCTTCGTTAATGCGTAGTAAGTTCAAGATTACAAAAAGCTGTCGAGTCag
ttcaaaactcaaaaaatgagcGGAAAAAGTGTCGGAAAGTTGAAGATGAT
ACTATCGACAACGCTTGGGTAATTGTGTAAGAGTTCacatcaaaaactca
aaaacagaCGGAGATTGTGTAAGAgttcacatcaaaactcaactGTCGGA
GATTGTGTAGAGTTCACatcaaaactccaaaaaaaatGACTGGATCCAAT
CAAAGGGAAAGAGGGGCTGATGTAAGTCCGCACTCTCGAAAGCTGGGCTG
AAAGTATAAAATGGGTCAACGCAGCAATGCGAACCTGGCGATAGCCTAGA
GTTGTGTGGCATCGAGATAAAAACCTACGGGTTCTCTGAAATcagagttt
tttgttttttaaacgaataaataaaaatgatattagaattatgcttaatt
tttcccttATATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021303XLOC_021303Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036213-exon-sc0001427-1491911889:10204..10819TCONS_00036213-exon-sc0001427-1491911889:10204..10819Clytia hemisphaericaexon
TCONS_00036213-exon-sc0001427-1510915933:10204..10819TCONS_00036213-exon-sc0001427-1510915933:10204..10819Clytia hemisphaericaexon
TCONS_00036213-exon-sc0001427-1575043694:10204..10819TCONS_00036213-exon-sc0001427-1575043694:10204..10819Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001427supercontigsc0001427:10204..10819 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.149768	0.188109	0.388415	3.08142	1.95308	0.977441	0.993662	2.37407	1.38168	2.67901	2.54385	1.91535	2.11657	0.221965	0.148055	0.515487	0.242304	0.526115	0.142154	0	0.20739	0.127939	0.411573	0.72359	0.176727	0.475763	0.34972	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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