TCONS_00036208 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036208
Unique NameTCONS_00036208
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length439

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036208 ID=TCONS_00036208|Name=TCONS_00036208|organism=Clytia hemisphaerica|type=transcript|length=439bp
gTTCTTCAAAAGGCAATTCGTTTATAGTGAGGAAAACGGGCCAAAGAgaa
gattttgttgatttaaAAACGGGCACACCATCAGTGTTCCACAAGAAAGA
AATGTTAAAaagattgcttaaaaaagaagcaaaagatTTATAAAGGGATC
CATCATAAATGTCGGAAGGCGAGGAAGAATTTCGATTGAACCGGTACGAT
AACTTTGACAACATTCTAACACGTGAAAAGATTGACTTTATCTGTTGTTT
GACGACAAATTCCATGAAAAGCGATTTCTTTAAAGGGGATTTATTTGGTT
TTGACTGCTCACACATGGAATTTGAGCACAAATTATCATTCTTATCCAGC
TTAATCAAACATGTGGTACAAAAATAGTGCATATTGACAGTTGGCGATAA
CGGACCGAAAAACTTCTGGAAGAGGTGCAACGACTTCGG
Run BLAST on NCBI

protein sequence of TCONS_00036208-protein

>TCONS_00036208-protein ID=TCONS_00036208-protein|Name=TCONS_00036208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
PKSLHLFQKFFGPLSPTVNMHYFCTTCLIKLDKNDNLCSNSMCEQSKPNK
SPLKKSLFMEFVVKQQIKSIFSRVRMLSKLSYRFNRNSSSPSDIYDGSLY
KSFASFLSNLFNISFLWNTDGVPVFKSTKSSLWPVFLTINELPFEE
Run BLAST on NCBI

transcript from alignment at sc0001426:34620..35058

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036208 ID=TCONS_00036208|Name=TCONS_00036208|organism=Clytia hemisphaerica|type=transcript|length=439bp|location=Sequence derived from alignment at sc0001426:34620..35058 (Clytia hemisphaerica)
CCGAAGTCGTTGCACCTCTTCCAGAAGTTTTTCGGTCCGTTATCGCCAAC
TGTCAATATGCACTATTTTTGTACCACATGTTTGATTAAGCTGGATAAGA
ATGATAATTTGTGCTCAAATTCCATGTGTGAGCAGTCAAAACCAAATAAA
TCCCCTTTAAAGAAATCGCTTTTCATGGAATTTGTCGTCAAACAACAGAT
AAAGTCAATCTTTTCACGTGTTAGAATGTTGTCAAAGTTATCGTACCGGT
TCAATCGAAATTCTTCCTCGCCTTCCGACATTTATGATGGATCCCTTTAT
AAatcttttgcttcttttttaagcaatcttTTTAACATTTCTTTCTTGTG
GAACACTGATGGTGTGCCCGTTTttaaatcaacaaaatcttcTCTTTGGC
CCGTTTTCCTCACTATAAACGAATTGCCTTTTGAAGAAc

Coding sequence (CDS) from alignment at sc0001426:34620..35058

>TCONS_00036208 ID=TCONS_00036208|Name=TCONS_00036208|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at sc0001426:34620..35058 (Clytia hemisphaerica)
CCGAAGTCGTTGCACCTCTTCCAGAAGTTTTTCGGTCCGTTATCGCCAAC
TGTCAATATGCACTATTTTTGTACCACATGTTTGATTAAGCTGGATAAGA
ATGATAATTTGTGCTCAAATTCCATGTGTGAGCAGTCAAAACCAAATAAA
TCCCCTTTAAAGAAATCGCTTTTCATGGAATTTGTCGTCAAACAACAGAT
AAAGTCAATCTTTTCACGTGTTAGAATGTTGTCAAAGTTATCGTACCGGT
TCAATCGAAATTCTTCCTCGCCTTCCGACATTTATGATGGATCCCTTTAT
AAatcttttgcttcttttttaagcaatcttTTTAACATTTCTTTCTTGTG
GAACACTGATGGTGTGCCCGTTTttaaatcaacaaaatcttcTCTTTGGC
CCGTTTTCCTCACTATAAACGAATTGCCTTTTGAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021298XLOC_021298Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036208-exon-sc0001426-1491911889:34620..35058TCONS_00036208-exon-sc0001426-1491911889:34620..35058Clytia hemisphaericaexon
TCONS_00036208-exon-sc0001426-1510915933:34620..35058TCONS_00036208-exon-sc0001426-1510915933:34620..35058Clytia hemisphaericaexon
TCONS_00036208-exon-sc0001426-1575043694:34620..35058TCONS_00036208-exon-sc0001426-1575043694:34620..35058Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036208-proteinTCONS_00036208-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001426supercontigsc0001426:34620..35058 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.416032	0.328754	0	0	0.389953	0.161007	0.156277	0.10273	0.307763	0	0.262767	0.187992	0	0	0.983834	0	0	0	0	0	0.66245	1.18244	0.211509	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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