TCONS_00036207 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036207
Unique NameTCONS_00036207
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036207 ID=TCONS_00036207|Name=TCONS_00036207|organism=Clytia hemisphaerica|type=transcript|length=426bp
GATTCAGCGGCTCGGAATATGCTTGGATATATGAAAATAACAAGGAAAAT
TATTATTAGAGATTATTTAAAAAGACTCCCTTCAAAACGAACCTACTAAC
AGCAACAAGGCCCCTACTCCTAGCGATGAACATATTTTAATGACCTAAAG
TAAGTATCAAGTCAGCagagtaaaaaacaaaaataatttaatacaTATTA
TTTTCTACATCATGTAATAGAGGGAAAAAAATAAGTTGTTTTTGTAAAAG
AGTCTGaccattttctttttaattgaagATATGGTAAATTATTCAGTTCT
ATTAATTTTTGTAGAACCTCGCAAGTAAAGGATATCAAGCTTCATAGATT
CTATTGAAAAAGTGTAGAAGGATTCAAAATATTTCCGTTTTATAACTTGA
CACTCGTAGCCTTTGTCGGTTTCCTT
Run BLAST on NCBI

transcript from alignment at sc0001426:17996..18421

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036207 ID=TCONS_00036207|Name=TCONS_00036207|organism=Clytia hemisphaerica|type=transcript|length=426bp|location=Sequence derived from alignment at sc0001426:17996..18421 (Clytia hemisphaerica)
AAGGAAACCGACAAAGGCTACGAGTGTCAAGTTATAAAACGGAAATATTT
TGAATCCTTCTACACTTTTTCAATAGAATCTATGAAGCTTGATATCCTTT
ACTTGCGAGGTTCTACAAAAATTAATAGAACTGAATAATTTACCATATct
tcaattaaaaagaaaatggtCAGACTCTTTTACAAAAACAACTTATTTTT
TTCCCTCTATTACATGATGTAGAAAATAATAtgtattaaattatttttgt
tttttactctGCTGACTTGATACTTACTTTAGGTCATTAAAATATGTTCA
TCGCTAGGAGTAGGGGCCTTGTTGCTGTTAGTAGGTTCGTTTTGAAGGGA
GTCTTTTTAAATAATCTCTAATAATAATTTTCCTTGTTATTTTCATATAT
CCAAGCATATTCCGAGCCGCTGAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021297XLOC_021297Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036207-exon-sc0001426-1491911889:17996..18421TCONS_00036207-exon-sc0001426-1491911889:17996..18421Clytia hemisphaericaexon
TCONS_00036207-exon-sc0001426-1510915933:17996..18421TCONS_00036207-exon-sc0001426-1510915933:17996..18421Clytia hemisphaericaexon
TCONS_00036207-exon-sc0001426-1575043694:17996..18421TCONS_00036207-exon-sc0001426-1575043694:17996..18421Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001426supercontigsc0001426:17996..18421 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.326984	0.318861	0	0	0.881912	0.871123	2.31214	1.96782	2.47989	1.19457	0	3.91985	0.217467	0	0.185672	0	0	0	0.695182	0	0.158073	0.231308	0	0.340851	0.87767	0	0	0.717752	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036207 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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