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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036206 ID=TCONS_00036206|Name=TCONS_00036206|organism=Clytia hemisphaerica|type=transcript|length=1732bp
GGAAAAGTGTAGAAGGATTCAAAATATTTCCGTTTTATAACTTGACACTC
GTAGCCATTGTCGGTTTCCTTCTTGATTTCGCACACATCTCCGCCAATCG
TCAAAAAGAAACAATCCCTTGAGTTTACCTTAAAGCACTTTTTCGGTTTA
TCTGACAGTAGAGAGCTGTTAATTTGTATCTCCCCAAGCCTTTTAACGAT
TTGAGTGATTGGATTACTTCCATTGCGAACCatctttttcaaagtttgca
TGTAGTTCTCAAATCGAAAAGCTGAAATTTCATTGAGTGAGCATTCATGT
TTCAATACATCGTCAGCAATATGGACAATGGAATGAACATTGTAAACATT
GAAAAGAGGGCCATATACAGACTTTgaagttttagaaaaacatttcaaaa
gatCTCTTGGATATACCACAAGTTCAGGATGTAGATCAATATGTTCTTGT
AACAGAATTGTTCACGCAACATGTAACGCTAAAAAGTGTTGGTAAAGTTT
GCTTGAAACCATCTTTTTCAATACCACAGGtccaagataaataaaaaata
gacgGAACTCTGTAGCTTTCCAGTAGCAAAGTTCATCTAGAGGGCGTGGC
TTTCGGTTAAAGTTGGAAGGAATATTTCTACGTAAAGAGATCAACCGATT
CGAAATCTCAATAGCTTGTCGACGGGATACTTTGCAAATTTTGTCTCCTT
TTAAGATAAAAACCAATGCTCTTTTTACAACACCAAGTAGTACCATATGC
ATGTAATCCAAAGGAAAATCATCAATACAGTTAACTATTGGAATGAGGGG
TGACAAATCATGTTGATGATGCTCATATCCTAATTCATTGAATTTTTCAA
CAGTCCTAAGTGGATCATCATTAAAAGAGTCATACACACTTCTGTTTTCC
TTTCTTTCACCTCTCACCTCACAGTGCTCATACGCATTAAAGCCAGCATG
ACCAATAGTCCATTTCACAAATGATCTAGCTGGCGCATCACAAATAAGTG
CTTTAAGCTCAAACAGTAAAACAGTTCCTTGAAAGGTGATTCCATTTCTT
CTTAAATTGATAACCTCGTCCacaaaatctgataaaaaatcTGCAGCTGA
GGAAGGTTTACTAGTTCCATAAAAAATAGCAATCGGAAAAACATACTTTG
ATTTAAATACAGCACCTAGGATGGGCCAAAGTTGTGCATTAGATGACTTT
GAAATAGGGACACCATCTATGTTTACAAGAAGTCTTaatttattttcagg
aaaatcaATAAGGTTTTCTGATAACAATAATTGCAAGTTATCTTCAATGC
CAAAATATCTGTAGGAACTTTCCTCCCCAGGATTGTGAATTATGTCATCA
ACAGTCCTTTGAGTTTTAAGAAGTGTTCTCGAGTCTTTTGGTATTTCAAC
TCCATAATCAATGAGGGACGAAAGTAAGTCGTTTACACAGCTTCGACTCA
ATCTATATTTTGTGGCGACATTTCTTAAGTCAGACTGTAACTGTGCATTT
TTATCCAATACTGTATCACAAAAGAGAATGCCAAGATCATCATCATTCTC
AGACGAGAGTGCTTCTATAGTGGTATCGAATGATTCATCTGAAGAGCTGA
AAGTACTTCCAAAATCAGACTGTTCATAAATATTGTCTAAATCTTGGGAA
ATATTAAGTTGGATAGGAACATCTTCAGTAACTTGGAAAGGAGCAGCTTC
AGTAACTAAGACCTTAGGAGAGGCTTCACCAA Run BLAST on NCBI protein sequence of TCONS_00036206-protein >TCONS_00036206-protein ID=TCONS_00036206-protein|Name=TCONS_00036206-protein|organism=Clytia hemisphaerica|type=polypeptide|length=422bp
GEASPKVLVTEAAPFQVTEDVPIQLNISQDLDNIYEQSDFGSTFSSSDES
FDTTIEALSSENDDDLGILFCDTVLDKNAQLQSDLRNVATKYRLSRSCVN
DLLSSLIDYGVEIPKDSRTLLKTQRTVDDIIHNPGEESSYRYFGIEDNLQ
LLLSENLIDFPENKLRLLVNIDGVPISKSSNAQLWPILGAVFKSKYVFPI
AIFYGTSKPSSAADFLSDFVDEVINLRRNGITFQGTVLLFELKALICDAP
ARSFVKWTIGHAGFNAYEHCEVRGERKENRSVYDSFNDDPLRTVEKFNEL
GYEHHQHDLSPLIPIVNCIDDFPLDYMHMVLLGVVKRALVFILKGDKICK
VSRRQAIEISNRLISLRRNIPSNFNRKPRPLDELCYWKATEFRLFFIYLG
PVVLKKMVSSKLYQHFLALHVA Run BLAST on NCBI transcript from alignment at sc0001426:13712..15443 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036206 ID=TCONS_00036206|Name=TCONS_00036206|organism=Clytia hemisphaerica|type=transcript|length=1732bp|location=Sequence derived from alignment at sc0001426:13712..15443 (Clytia hemisphaerica)
TTGGTGAAGCCTCTCCTAAGGTCTTAGTTACTGAAGCTGCTCCTTTCCAA
GTTACTGAAGATGTTCCTATCCAACTTAATATTTCCCAAGATTTAGACAA
TATTTATGAACAGTCTGATTTTGGAAGTACTTTCAGCTCTTCAGATGAAT
CATTCGATACCACTATAGAAGCACTCTCGTCTGAGAATGATGATGATCTT
GGCATTCTCTTTTGTGATACAGTATTGGATAAAAATGCACAGTTACAGTC
TGACTTAAGAAATGTCGCCACAAAATATAGATTGAGTCGAAGCTGTGTAA
ACGACTTACTTTCGTCCCTCATTGATTATGGAGTTGAAATACCAAAAGAC
TCGAGAACACTTCTTAAAACTCAAAGGACTGTTGATGACATAATTCACAA
TCCTGGGGAGGAAAGTTCCTACAGATATTTTGGCATTGAAGATAACTTGC
AATTATTGTTATCAGAAAACCTTATtgattttcctgaaaataaattAAGA
CTTCTTGTAAACATAGATGGTGTCCCTATTTCAAAGTCATCTAATGCACA
ACTTTGGCCCATCCTAGGTGCTGTATTTAAATCAAAGTATGTTTTTCCGA
TTGCTATTTTTTATGGAACTAGTAAACCTTCCTCAGCTGCAgatttttta
tcagattttgtGGACGAGGTTATCAATTTAAGAAGAAATGGAATCACCTT
TCAAGGAACTGTTTTACTGTTTGAGCTTAAAGCACTTATTTGTGATGCGC
CAGCTAGATCATTTGTGAAATGGACTATTGGTCATGCTGGCTTTAATGCG
TATGAGCACTGTGAGGTGAGAGGTGAAAGAAAGGAAAACAGAAGTGTGTA
TGACTCTTTTAATGATGATCCACTTAGGACTGTTGAAAAATTCAATGAAT
TAGGATATGAGCATCATCAACATGATTTGTCACCCCTCATTCCAATAGTT
AACTGTATTGATGATTTTCCTTTGGATTACATGCATATGGTACTACTTGG
TGTTGTAAAAAGAGCATTGGTTTTTATCTTAAAAGGAGACAAAATTTGCA
AAGTATCCCGTCGACAAGCTATTGAGATTTCGAATCGGTTGATCTCTTTA
CGTAGAAATATTCCTTCCAACTTTAACCGAAAGCCACGCCCTCTAGATGA
ACTTTGCTACTGGAAAGCTACAGAGTTCcgtctattttttatttatcttg
gaCCTGTGGTATTGAAAAAGATGGTTTCAAGCAAACTTTACCAACACTTT
TTAGCGTTACATGTTGCGTGAACAATTCTGTTACAAGAACATATTGATCT
ACATCCTGAACTTGTGGTATATCCAAGAGatcttttgaaatgtttttcta
aaacttcAAAGTCTGTATATGGCCCTCTTTTCAATGTTTACAATGTTCAT
TCCATTGTCCATATTGCTGACGATGTATTGAAACATGAATGCTCACTCAA
TGAAATTTCAGCTTTTCGATTTGAGAACTACAtgcaaactttgaaaaaga
tGGTTCGCAATGGAAGTAATCCAATCACTCAAATCGTTAAAAGGCTTGGG
GAGATACAAATTAACAGCTCTCTACTGTCAGATAAACCGAAAAAGTGCTT
TAAGGTAAACTCAAGGGATTGTTTCTTTTTGACGATTGGCGGAGATGTGT
GCGAAATCAAGAAGGAAACCGACAATGGCTACGAGTGTCAAGTTATAAAA
CGGAAATATTTTGAATCCTTCTACACTTTTCC Coding sequence (CDS) from alignment at sc0001426:13712..15443 >TCONS_00036206 ID=TCONS_00036206|Name=TCONS_00036206|organism=Clytia hemisphaerica|type=CDS|length=1269bp|location=Sequence derived from alignment at sc0001426:13712..15443 (Clytia hemisphaerica)
GGTGAAGCCTCTCCTAAGGTCTTAGTTACTGAAGCTGCTCCTTTCCAAGT
TACTGAAGATGTTCCTATCCAACTTAATATTTCCCAAGATTTAGACAATA
TTTATGAACAGTCTGATTTTGGAAGTACTTTCAGCTCTTCAGATGAATCA
TTCGATACCACTATAGAAGCACTCTCGTCTGAGAATGATGATGATCTTGG
CATTCTCTTTTGTGATACAGTATTGGATAAAAATGCACAGTTACAGTCTG
ACTTAAGAAATGTCGCCACAAAATATAGATTGAGTCGAAGCTGTGTAAAC
GACTTACTTTCGTCCCTCATTGATTATGGAGTTGAAATACCAAAAGACTC
GAGAACACTTCTTAAAACTCAAAGGACTGTTGATGACATAATTCACAATC
CTGGGGAGGAAAGTTCCTACAGATATTTTGGCATTGAAGATAACTTGCAA
TTATTGTTATCAGAAAACCTTATtgattttcctgaaaataaattAAGACT
TCTTGTAAACATAGATGGTGTCCCTATTTCAAAGTCATCTAATGCACAAC
TTTGGCCCATCCTAGGTGCTGTATTTAAATCAAAGTATGTTTTTCCGATT
GCTATTTTTTATGGAACTAGTAAACCTTCCTCAGCTGCAgattttttatc
agattttgtGGACGAGGTTATCAATTTAAGAAGAAATGGAATCACCTTTC
AAGGAACTGTTTTACTGTTTGAGCTTAAAGCACTTATTTGTGATGCGCCA
GCTAGATCATTTGTGAAATGGACTATTGGTCATGCTGGCTTTAATGCGTA
TGAGCACTGTGAGGTGAGAGGTGAAAGAAAGGAAAACAGAAGTGTGTATG
ACTCTTTTAATGATGATCCACTTAGGACTGTTGAAAAATTCAATGAATTA
GGATATGAGCATCATCAACATGATTTGTCACCCCTCATTCCAATAGTTAA
CTGTATTGATGATTTTCCTTTGGATTACATGCATATGGTACTACTTGGTG
TTGTAAAAAGAGCATTGGTTTTTATCTTAAAAGGAGACAAAATTTGCAAA
GTATCCCGTCGACAAGCTATTGAGATTTCGAATCGGTTGATCTCTTTACG
TAGAAATATTCCTTCCAACTTTAACCGAAAGCCACGCCCTCTAGATGAAC
TTTGCTACTGGAAAGCTACAGAGTTCcgtctattttttatttatcttgga
CCTGTGGTATTGAAAAAGATGGTTTCAAGCAAACTTTACCAACACTTTTT
AGCGTTACATGTTGCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036206-exon-sc0001426-1491911889:13712..15443 | TCONS_00036206-exon-sc0001426-1491911889:13712..15443 | Clytia hemisphaerica | exon |
| TCONS_00036206-exon-sc0001426-1510915933:13712..15443 | TCONS_00036206-exon-sc0001426-1510915933:13712..15443 | Clytia hemisphaerica | exon |
| TCONS_00036206-exon-sc0001426-1575043694:13712..15443 | TCONS_00036206-exon-sc0001426-1575043694:13712..15443 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001426 | supercontig | sc0001426:13712..15443 . |
Blast
The following BLAST results are available for this feature:
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