TCONS_00036202 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036202
Unique NameTCONS_00036202
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length667

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036202 ID=TCONS_00036202|Name=TCONS_00036202|organism=Clytia hemisphaerica|type=transcript|length=667bp
aataaaatctcTGGGGGCGTTTGTGGACGAAATAACATTTCGAACAAAAA
CGTTCGATTTGATAATTCGAACGCTGAAGTCGTTCCATTGCGTAAACAAG
CTAACAAATTGGAAGAGGAACGGATAGCGGTCATTTGTGTACATATAAGG
ATTGTTCTGTTCTCCACCCAGGTGAGGAAATTGTTGTTGTGTTTCTGTTT
GTCATTATTATTTATTACTTGCACTGACTTGCAAGTAGTCATTAAGATGG
CGAACCCAGGAAAAGGTAGTCTAAAAGGGCTTTCCAGAACGTCGATATAT
AGACACAGGGATGAAATTTACAAGAACAGACTTGAAGATTGTGATTATTT
CAAGGATTGTTCCATTGTGGAAAACTTTGTTGAGTCAGATAAAGAAGACC
ATTTTTTTGATGCCATCGATGATGAAATGCCCTTGTAGAGCCAGAGTGAT
GAACAAGTGTATGGTTGTCAATCTGAGGAGGGTGACATACCTGGATATTT
CCTAGatTACCTTTCATCGTCTGCATCAACTGTCGTAAcagaaagtgaaa
atgaagCGTTCAAACAGTGGAATGAAGATGTCATCTCTGCATATCTCGAC
GAAGATGACGACGTCTCGATCTCCGAATTCTTGAATGGTAAGTACTTACC
AATATCGAGGACACGAG
Run BLAST on NCBI

protein sequence of TCONS_00036202-protein

>TCONS_00036202-protein ID=TCONS_00036202-protein|Name=TCONS_00036202-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
NKISGGVCGRNNISNKNVRFDNSNAEVVPLRKQANKLEEERIAVICVHIR
IVLFSTQVRKLLLCFCLSLLFITCTDLQVVIKMANPGKGSLKGLSRTSIY
RHRDEIYKNRLEDCDYFKDCSIVENFVESDKEDHFFDAIDDEMPL
Run BLAST on NCBI

transcript from alignment at sc0001426:30350..31338+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036202 ID=TCONS_00036202|Name=TCONS_00036202|organism=Clytia hemisphaerica|type=transcript|length=989bp|location=Sequence derived from alignment at sc0001426:30350..31338+ (Clytia hemisphaerica)
aataaaatctcTGGGGGCGTTTGTGGACGAAATAACATTTCGAACAAAAA
CGTTCGATTTGATAATTCGAACGCTGAAGTCGTTCCATTGCGTAAACAAG
CTAACAAATTGGAAGAGGAACGGATAGCGGTCATTTGTGTACATATAAGG
ATTGTTCTGTTCTCCACCCAGGTGAGGAAATTGTTGTTGTGTTTCTGTTT
GTCATTATTATTTATTACTTGCACTGACTTGCAAGTAGTCATTAAGATGG
CGAACCCAGGAAAAGGTAGTCTAAAAGGGCTTTCCAGAACGTCGATATAT
AGACACAGGGATGAAATTTACAAGAACAGACTTGAAGATTGTGATTATTT
CAAGGATTGTTCCATTGTGGAAAACTTTGTTGAGTCAGATAAAGAAGACC
ATTTTTTTGATGCCATCGATGATGAAATGCCCTTGTAGAGCCAGAGTGAT
GAACAAGTGTATGGTTGTCAATCTGAGGAGGGTGACATACCTGGATATTT
CCTAGGTGAGGGTTTTACTGGGGTCATCTAATTATACTGCAAATCTCTTA
TTTGATATTTGAGGCAGCCATTTGACTGATGGAAAAGTTTCTcgtaggtg
ccaaataaacgacCCTCCCCTAATCTTTTAGCTTAAGTGTATAGAATTAT
GGACATGTAAaaaattttgagcttaaaaTCGATGATCCTTTGGATCCTAA
GTAGGGATCAAATGATTATGACAGAATTCTATCAGTATTTTTTTTAGAGA
ACTTAATCCTCGCCAAATTTTATACACTTAAAAAAGGGATTGTAAAACAA
TGTCTAAAATagtctttttgattttagatTACCTTTCATCGTCTGCATCA
ACTGTCGTAAcagaaagtgaaaatgaagCGTTCAAACAGTGGAATGAAGA
TGTCATCTCTGCATATCTCGACGAAGATGACGACGTCTCGATCTCCGAAT
TCTTGAATGGTAAGTACTTACCAATATCGAGGACACGAG

Coding sequence (CDS) from alignment at sc0001426:30350..31338+

>TCONS_00036202 ID=TCONS_00036202|Name=TCONS_00036202|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at sc0001426:30350..31338+ (Clytia hemisphaerica)
aataaaatctcTGGGGGCGTTTGTGGACGAAATAACATTTCGAACAAAAA
CGTTCGATTTGATAATTCGAACGCTGAAGTCGTTCCATTGCGTAAACAAG
CTAACAAATTGGAAGAGGAACGGATAGCGGTCATTTGTGTACATATAAGG
ATTGTTCTGTTCTCCACCCAGGTGAGGAAATTGTTGTTGTGTTTCTGTTT
GTCATTATTATTTATTACTTGCACTGACTTGCAAGTAGTCATTAAGATGG
CGAACCCAGGAAAAGGTAGTCTAAAAGGGCTTTCCAGAACGTCGATATAT
AGACACAGGGATGAAATTTACAAGAACAGACTTGAAGATTGTGATTATTT
CAAGGATTGTTCCATTGTGGAAAACTTTGTTGAGTCAGATAAAGAAGACC
ATTTTTTTGATGCCATCGATGATGAAATGCCCTTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021292XLOC_021292Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036202-proteinTCONS_00036202-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036202-exon-sc0001426-1491911889:30350..30854TCONS_00036202-exon-sc0001426-1491911889:30350..30854Clytia hemisphaericaexon
TCONS_00036202-exon-sc0001426-1510915933:30350..30854TCONS_00036202-exon-sc0001426-1510915933:30350..30854Clytia hemisphaericaexon
TCONS_00036202-exon-sc0001426-1575043694:30350..30854TCONS_00036202-exon-sc0001426-1575043694:30350..30854Clytia hemisphaericaexon
TCONS_00036202-exon-sc0001426-1491911889:31177..31338TCONS_00036202-exon-sc0001426-1491911889:31177..31338Clytia hemisphaericaexon
TCONS_00036202-exon-sc0001426-1510915933:31177..31338TCONS_00036202-exon-sc0001426-1510915933:31177..31338Clytia hemisphaericaexon
TCONS_00036202-exon-sc0001426-1575043694:31177..31338TCONS_00036202-exon-sc0001426-1575043694:31177..31338Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001426supercontigsc0001426:30350..31338 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.297208	0.075538	0	0.0858074	0.835698	0.495285	0.79672	1.39852	1.99683	1.55873	2.04047	1.0432	0.993683	0.695522	0.458595	0.340394	1.45377	0.23841	0.98813	0.898096	0.389023	0.724467	0	0	1.08118	0.593803	0.106216	0.113357	0	0.262791
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036202 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top