TCONS_00036201 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036201
Unique NameTCONS_00036201
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1163

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036201 ID=TCONS_00036201|Name=TCONS_00036201|organism=Clytia hemisphaerica|type=transcript|length=1163bp
TNAAgttgataaaaatagaaattttgcggattgcaaaaaaaattcaatta
tttcgcggaaactaattttcacggATGGGccttttccaaatttccaatgg
gacttatcttcgcggatgacacccaaatccgtgaaatccgtgaaaattaa
tccccgcaaaaatttatcccattaaagtaagttcttaatcatcatcatca
ccacCATCTTCCTTCTCTTTGTCTGGTGATGATAGGCTTCCTGTTCTGCA
TCTATACTTATCCACATTGTCAAAATCTTCACACTcttcattttcagatt
cagATTCTGTTTCTTCATTTTCCTGCTGTGCTGATAAAATAAAAGGCTGA
ATATATGTTGGAACTTTTGACAAGCCTTCCTCCACTTCAGATTCACAGAT
ATCGCAACATTCTTTAGCTGGAATATCATGACTATTTACATCAAATTGTT
TCAATAGCATTTTTCTGCGGCAAATCAGTTTATTTCTAACATATTCTTTA
ATTTCAGGTTTCAACTTCTTAGAACCAAGACATTTAGGGTAGTTGATTAT
ACAAGCGTAACTTGGTTTGCCATTCCTGCCTGCTCTTCCTGTCTCCTGAA
AATAGTCTTCTGTTGCTGAAGGTGGGCCGTAATGGAGAGCAATATTGAGG
TCTTTACAATCTACCCCCATGCCAAATGCTATTGTAGCAATCAAAACTCT
TACACTGCCTTTTGGATccgaaaaagattgaataataaatttctgaattt
cttCTTGGGTATAGCAATGAAACATGGCAAACGGTCTCACTGTATAATCT
GGGAAATCTGATTTTAATGCTCTTTTGAAAGCCCCAAAAATAGCTGTAAC
ATGATCAGTCAGTCTACAAAAAATGATACATCTTGGTGCTTTGTATTTTT
TCTGTCTTAATTCTTCAATGATATGCCCAAAATTTTCATCAGGGTCTCTA
GTCGAGGTCTTAACAACAAAGTATTTAATGTTACTTTTATGTGGTACTGC
AATGTATCTAGACGGATCTGTCATACCAAGGTTGGTTTCGATGAAGGATA
CTGTAGCGTTGGTAGCTGTTGCAGTTAATGCAATAAATGGAGTTTCTGAG
GGAAGTATTGACTTTAACTCAACCAGCTTACTAAAACTCTCTCTGAAAGC
CTCAGACTTTTCA
Run BLAST on NCBI

protein sequence of TCONS_00036201-protein

>TCONS_00036201-protein ID=TCONS_00036201-protein|Name=TCONS_00036201-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
EKSEAFRESFSKLVELKSILPSETPFIALTATATNATVSFIETNLGMTDP
SRYIAVPHKSNIKYFVVKTSTRDPDENFGHIIEELRQKKYKAPRCIIFCR
LTDHVTAIFGAFKRALKSDFPDYTVRPFAMFHCYTQEEIQKFIIQSFSDP
KGSVRVLIATIAFGMGVDCKDLNIALHYGPPSATEDYFQETGRAGRNGKP
SYACIINYPKCLGSKKLKPEIKEYVRNKLICRRKMLLKQFDVNSHDIPAK
ECCDICESEVEEGLSKVPTYIQPFILSAQQENEETESESENEECEDFDNV
DKYRCRTGSLSSPDKEKEDGGDDDD
Run BLAST on NCBI

transcript from alignment at sc0001424:59725..60887

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036201 ID=TCONS_00036201|Name=TCONS_00036201|organism=Clytia hemisphaerica|type=transcript|length=1163bp|location=Sequence derived from alignment at sc0001424:59725..60887 (Clytia hemisphaerica)
TGAAAAGTCTGAGGCTTTCAGAGAGAGTTTTAGTAAGCTGGTTGAGTTAA
AGTCAATACTTCCCTCAGAAACTCCATTTATTGCATTAACTGCAACAGCT
ACCAACGCTACAGTATCCTTCATCGAAACCAACCTTGGTATGACAGATCC
GTCTAGATACATTGCAGTACCACATAAAAGTAACATTAAATACTTTGTTG
TTAAGACCTCGACTAGAGACCCTGATGAAAATTTTGGGCATATCATTGAA
GAATTAAGACAGAAAAAATACAAAGCACCAAGATGTATCATTTTTTGTAG
ACTGACTGATCATGTTACAGCTATTTTTGGGGCTTTCAAAAGAGCATTAA
AATCAGATTTCCCAGATTATACAGTGAGACCGTTTGCCATGTTTCATTGC
TATACCCAAGaagaaattcagaaatttattattcaatctttttcggATCC
AAAAGGCAGTGTAAGAGTTTTGATTGCTACAATAGCATTTGGCATGGGGG
TAGATTGTAAAGACCTCAATATTGCTCTCCATTACGGCCCACCTTCAGCA
ACAGAAGACTATTTTCAGGAGACAGGAAGAGCAGGCAGGAATGGCAAACC
AAGTTACGCTTGTATAATCAACTACCCTAAATGTCTTGGTTCTAAGAAGT
TGAAACCTGAAATTAAAGAATATGTTAGAAATAAACTGATTTGCCGCAGA
AAAATGCTATTGAAACAATTTGATGTAAATAGTCATGATATTCCAGCTAA
AGAATGTTGCGATATCTGTGAATCTGAAGTGGAGGAAGGCTTGTCAAAAG
TTCCAACATATATTCAGCCTTTTATTTTATCAGCACAGCAGGAAAATGAA
GAAACAGAATctgaatctgaaaatgaagAGTGTGAAGATTTTGACAATGT
GGATAAGTATAGATGCAGAACAGGAAGCCTATCATCACCAGACAAAGAGA
AGGAAGATGgtggtgatgatgatgattaagaacttactttaatgggataa
atttttgcggggattaattttcacggatttcacggatttgggtgtcatcc
gcgaagataagtcccattggaaatttggaaaaggCCCATccgtgaaaatt
agtttccgcgaaataattgaattttttttgcaatccgcaaaatttctatt
tttatcaacTTNA

Coding sequence (CDS) from alignment at sc0001424:59725..60887

>TCONS_00036201 ID=TCONS_00036201|Name=TCONS_00036201|organism=Clytia hemisphaerica|type=CDS|length=978bp|location=Sequence derived from alignment at sc0001424:59725..60887 (Clytia hemisphaerica)
GAAAAGTCTGAGGCTTTCAGAGAGAGTTTTAGTAAGCTGGTTGAGTTAAA
GTCAATACTTCCCTCAGAAACTCCATTTATTGCATTAACTGCAACAGCTA
CCAACGCTACAGTATCCTTCATCGAAACCAACCTTGGTATGACAGATCCG
TCTAGATACATTGCAGTACCACATAAAAGTAACATTAAATACTTTGTTGT
TAAGACCTCGACTAGAGACCCTGATGAAAATTTTGGGCATATCATTGAAG
AATTAAGACAGAAAAAATACAAAGCACCAAGATGTATCATTTTTTGTAGA
CTGACTGATCATGTTACAGCTATTTTTGGGGCTTTCAAAAGAGCATTAAA
ATCAGATTTCCCAGATTATACAGTGAGACCGTTTGCCATGTTTCATTGCT
ATACCCAAGaagaaattcagaaatttattattcaatctttttcggATCCA
AAAGGCAGTGTAAGAGTTTTGATTGCTACAATAGCATTTGGCATGGGGGT
AGATTGTAAAGACCTCAATATTGCTCTCCATTACGGCCCACCTTCAGCAA
CAGAAGACTATTTTCAGGAGACAGGAAGAGCAGGCAGGAATGGCAAACCA
AGTTACGCTTGTATAATCAACTACCCTAAATGTCTTGGTTCTAAGAAGTT
GAAACCTGAAATTAAAGAATATGTTAGAAATAAACTGATTTGCCGCAGAA
AAATGCTATTGAAACAATTTGATGTAAATAGTCATGATATTCCAGCTAAA
GAATGTTGCGATATCTGTGAATCTGAAGTGGAGGAAGGCTTGTCAAAAGT
TCCAACATATATTCAGCCTTTTATTTTATCAGCACAGCAGGAAAATGAAG
AAACAGAATctgaatctgaaaatgaagAGTGTGAAGATTTTGACAATGTG
GATAAGTATAGATGCAGAACAGGAAGCCTATCATCACCAGACAAAGAGAA
GGAAGATGgtggtgatgatgatgattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021291XLOC_021291Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036201-proteinTCONS_00036201-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036201-exon-sc0001424-1491911889:59725..60887TCONS_00036201-exon-sc0001424-1491911889:59725..60887Clytia hemisphaericaexon
TCONS_00036201-exon-sc0001424-1510915933:59725..60887TCONS_00036201-exon-sc0001424-1510915933:59725..60887Clytia hemisphaericaexon
TCONS_00036201-exon-sc0001424-1575043694:59725..60887TCONS_00036201-exon-sc0001424-1575043694:59725..60887Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001424supercontigsc0001424:59725..60887 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0743768	0.0362646	0.12632	0.0411948	0.902712	0.713335	0.717174	0.71617	0.219366	0.426988	0.0376768	0.495345	0.445191	0.179797	0.0422336	0.0453231	0.0279172	0.0572285	0.0790642	0.124102	0.107868	0.052614	0.0426395	0.116296	1.19783	0.962128	0.203971	0	0.123829	0.21027
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase
Blast
[Close]
BLAST of TCONS_00036201 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 5.812e-19
Identity = 79/295 (26.78%), Postives = 135/295 (45.76%), Query Frame = -2 
Query:  380 EKSEAFRESFSKLVELKSILPSETPFIALTATATNATVSFIETNLGMTDPSRYIAVPHKSNIKYFVVKTSTRDPDENFGHIIEELR--------QKKYKAPRCIIFC---RLTDHVTAIFGAFKRALKSDFPDYTVRPFAMFHCYTQEEIQKFIIQSFSDPKGSVRVLIATIAFGMGVDCKDLNIALHYGPPSATEDYFQETGRAGRNGKPSYACIINYPKCLGSK-----------------KLKPEIKEYVRNKLICRRKMLLKQFD------VNSHDIPAKECCDICESEVE 1162
            E    FR+SF KL  LK+ LP   P +ALTATA+++    I   L + +P        + N+ Y  V+  T       G+I+++L+          +++ P  II+C   ++T  VT   G  ++   S            +H       +K I   F   +  ++ +IATIAFGMG++  D+   +HYG P   E Y+QE GRAGR+G  S   ++  P  +                    K+  ++++Y+ +   CRR+++L  F+       +   +  ++CCD C S ++
Sbjct:  675 EWGHDFRDSFRKLGSLKTALPM-VPIVALTATASSSIREDIVRCLNLRNPQITCTGFDRPNL-YLEVRRKT-------GNILQDLQPFLVKTSSHWEFEGP-TIIYCPSRKMTQQVT---GELRKLNLS---------CGTYHAGMSFSTRKDIHHRFV--RDEIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYKLKMMAKMEKYLHSSR-CRRQIILSHFEDKQVQKASLGIMGTEKCCDNCRSRLD 944
The following BLAST results are available for this feature:
BLAST of TCONS_00036201 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WRN5.812e-1926.78Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
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