TCONS_00036200 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036200
Unique NameTCONS_00036200
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length342

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036200 ID=TCONS_00036200|Name=TCONS_00036200|organism=Clytia hemisphaerica|type=transcript|length=342bp
gtgtttttcatttttttagaattaattttgattgactcgattttaaactt
ttacatACCAAAATTCAAGTTAGGTTTTCCTATAATAAAAAAGAATCAGC
TAAAAATTCTTGTCTGTGTACTTATTTTTGGTGCACCCTGTaaattttgc
tgttttggtTGATTTGTCCCAAAAACTAATTGCAAAATTCTATTCcccaa
aaaatctcaaatcaggacaccacaaaaattagttctcgcagAAAAAAAGT
TCCCATAAGGTAACTAAAAAGTAACTAAAATTTCAACAGTAAAAAGTTTG
CATTGTTATTTTTCTATAACAATACGTAATCAAAGTCTACCA
Run BLAST on NCBI

transcript from alignment at sc0001424:32172..32513

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036200 ID=TCONS_00036200|Name=TCONS_00036200|organism=Clytia hemisphaerica|type=transcript|length=342bp|location=Sequence derived from alignment at sc0001424:32172..32513 (Clytia hemisphaerica)
TGGTAGACTTTGATTACGTATTGTTATAGAAAAATAACAATGCAAACTTT
TTACTGTTGAAATTTTAGTTACTTTTTAGTTACCTTATGGGAACTTTTTT
TctgcgagaactaatttttgtggtgtcctgatttgagattttttgggGAA
TAGAATTTTGCAATTAGTTTTTGGGACAAATCAaccaaaacagcaaaatt
tACAGGGTGCACCAAAAATAAGTACACAGACAAGAATTTTTAGCTGATTC
TTTTTTATTATAGGAAAACCTAACTTGAATTTTGGTatgtaaaagtttaa
aatcgagtcaatcaaaattaattctaaaaaaatgaaaaacac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021290XLOC_021290Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036200-exon-sc0001424-1491911889:32172..32513TCONS_00036200-exon-sc0001424-1491911889:32172..32513Clytia hemisphaericaexon
TCONS_00036200-exon-sc0001424-1510915933:32172..32513TCONS_00036200-exon-sc0001424-1510915933:32172..32513Clytia hemisphaericaexon
TCONS_00036200-exon-sc0001424-1575043694:32172..32513TCONS_00036200-exon-sc0001424-1575043694:32172..32513Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001424supercontigsc0001424:32172..32513 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.4389	0.852779	2.05768	2.56851	0.674352	0.278431	0.810756	0.532959	0.177406	0.552714	1.36322	0	0.600741	0.410494	0	1.1869	1.03163	0.377395	0	0.278061	0.286396	0.511203	0.73153	1.56142	0.88821	0.603297
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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