TCONS_00036199 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036199
Unique NameTCONS_00036199
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length599

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036199 ID=TCONS_00036199|Name=TCONS_00036199|organism=Clytia hemisphaerica|type=transcript|length=599bp
ATCTTTAGTAAAGTCACCATCTGGCCACCACAGAAACCTCAAGAAGTTTT
GATGCTTTTCCTCGACGTTGACCTGGTAAAACATCTTCTCGATATTGCCC
ACTATCACGATATCGTCTTGTCTGAAACGTGTAAGAACGCCAACGAGTTG
GTTTGTCAAGTCCGGTCCTTGTAATAAAGTGTCATTTAAAGAGACACCCC
TGTATCTTGAACTGCAATCAAAGACGACTCTAAGCTTGTCAGGTTTACGC
GGATGGTAAACGCCATGATGTGGTATGTACCATACGTCGCCATCATCGGG
CTTGTCTTCAGAGGAGTCGATGTACACTGCANTCAAAGACGACTCTAAGC
TTGTCAGGTTTACGCGGATGGTAAACGCCATGATGTGGTATGTACCATAC
GTCGCCATCATCGGGCTTGTCTTCAGAGGAGTCGATGTACACCGCGTGTC
CATGCTCGAACAACTTGGACATCGAAATCAAGTAGTCATTCCTCATCCTT
TCCTCCTTCATGAGCTTCCTTTTCAAATAACTTGCTCTTGAAGCTGCTAT
ATGACGATTGTTGAACAACTGTGATTCCTCTCTGAAAGGTAATGGCATG
Run BLAST on NCBI

protein sequence of TCONS_00036199-protein

>TCONS_00036199-protein ID=TCONS_00036199-protein|Name=TCONS_00036199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MDTRCTSTPLKTSPMMATYGTYHIMAFTIRVNLTSLESSLXAVYIDSSED
KPDDGDVWYIPHHGVYHPRKPDKLRVVFDCSSRYRGVSLNDTLLQGPDLT
NQLVGVLTRFRQDDIVIVGNIEKMFYQVNVEEKHQNFLRFLWWPDGDFTK
D
Run BLAST on NCBI

transcript from alignment at sc0001424:5962..6560

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036199 ID=TCONS_00036199|Name=TCONS_00036199|organism=Clytia hemisphaerica|type=transcript|length=599bp|location=Sequence derived from alignment at sc0001424:5962..6560 (Clytia hemisphaerica)
CATGCCATTACCTTTCAGAGAGGAATCACAGTTGTTCAACAATCGTCATA
TAGCAGCTTCAAGAGCAAGTTATTTGAAAAGGAAGCTCATGAAGGAGGAA
AGGATGAGGAATGACTACTTGATTTCGATGTCCAAGTTGTTCGAGCATGG
ACACGCGGTGTACATCGACTCCTCTGAAGACAAGCCCGATGATGGCGACG
TATGGTACATACCACATCATGGCGTTTACCATCCGCGTAAACCTGACAAG
CTTAGAGTCGTCTTTGANTGCAGTGTACATCGACTCCTCTGAAGACAAGC
CCGATGATGGCGACGTATGGTACATACCACATCATGGCGTTTACCATCCG
CGTAAACCTGACAAGCTTAGAGTCGTCTTTGATTGCAGTTCAAGATACAG
GGGTGTCTCTTTAAATGACACTTTATTACAAGGACCGGACTTGACAAACC
AACTCGTTGGCGTTCTTACACGTTTCAGACAAGACGATATCGTGATAGTG
GGCAATATCGAGAAGATGTTTTACCAGGTCAACGTCGAGGAAAAGCATCA
AAACTTCTTGAGGTTTCTGTGGTGGCCAGATGGTGACTTTACTAAAGAT

Coding sequence (CDS) from alignment at sc0001424:5962..6560

>TCONS_00036199 ID=TCONS_00036199|Name=TCONS_00036199|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at sc0001424:5962..6560 (Clytia hemisphaerica)
ATGGACACGCGGTGTACATCGACTCCTCTGAAGACAAGCCCGATGATGGC
GACGTATGGTACATACCACATCATGGCGTTTACCATCCGCGTAAACCTGA
CAAGCTTAGAGTCGTCTTTGANTGCAGTGTACATCGACTCCTCTGAAGAC
AAGCCCGATGATGGCGACGTATGGTACATACCACATCATGGCGTTTACCA
TCCGCGTAAACCTGACAAGCTTAGAGTCGTCTTTGATTGCAGTTCAAGAT
ACAGGGGTGTCTCTTTAAATGACACTTTATTACAAGGACCGGACTTGACA
AACCAACTCGTTGGCGTTCTTACACGTTTCAGACAAGACGATATCGTGAT
AGTGGGCAATATCGAGAAGATGTTTTACCAGGTCAACGTCGAGGAAAAGC
ATCAAAACTTCTTGAGGTTTCTGTGGTGGCCAGATGGTGACTTTACTAAA
GAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021289XLOC_021289Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036199-exon-sc0001424-1491911889:5962..6560TCONS_00036199-exon-sc0001424-1491911889:5962..6560Clytia hemisphaericaexon
TCONS_00036199-exon-sc0001424-1510915933:5962..6560TCONS_00036199-exon-sc0001424-1510915933:5962..6560Clytia hemisphaericaexon
TCONS_00036199-exon-sc0001424-1575043694:5962..6560TCONS_00036199-exon-sc0001424-1575043694:5962..6560Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036199-proteinTCONS_00036199-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001424supercontigsc0001424:5962..6560 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02228	0.661341	0	0	0.641191	0.72377	2.87485	4.58048	1.63089	1.4404	1.55985	2.23346	0	0.12566	0.10331	0.166301	0.0682898	0.0699948	0	0	0.110823	0.311058	0.730119	0	0	0.504199	0	0	0.478826	0.411482
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036199 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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