TCONS_00036194 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036194
Unique NameTCONS_00036194
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length559

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036194 ID=TCONS_00036194|Name=TCONS_00036194|organism=Clytia hemisphaerica|type=transcript|length=559bp
cttaaatttgttcgagttatggaattttcgagttaaagagactggTTTAA
AAAGCATTGTTTAGTGAAAGGACAAGAAAAGTTGAtagagttaaggagac
attcgaataatagagattcAAGCTCTGGAGACTGTACCAGAAAATAATTA
TGGAAACTTTATAGTTCATTAAACTTGGATGATCATTCTCAAAGTACAGC
GGagtttctataactcgaacctctataactcgaattttcCTTAACTGGAG
CAAGTTTTAcgatcccttcagttaacaatgtcttactctataactcgaat
ttttcttaaatcgaacaaatttgtgttcctcttgtgtgttcgagttatag
agactccccTTTATATTTTTCAACGGAAATCGAATCTCGCTAAACTTAGA
TATTATATTTTCGCCATCAACGTTGATCGTGGCCGAGTTCGAATGATATG
TATAGATTCGGTGTTTGAATTAGGATAGCATATGGGACATTATTTCTTGA
AATTGGCGTTTAatcgtcatcaaatttttccattttaaggAGTTCAAATT
AGTCTTCTC
Run BLAST on NCBI

transcript from alignment at sc0001423:4596..5154

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036194 ID=TCONS_00036194|Name=TCONS_00036194|organism=Clytia hemisphaerica|type=transcript|length=559bp|location=Sequence derived from alignment at sc0001423:4596..5154 (Clytia hemisphaerica)
GAGAAGACTAATTTGAACTccttaaaatggaaaaatttgatgacgatTAA
ACGCCAATTTCAAGAAATAATGTCCCATATGCTATCCTAATTCAAACACC
GAATCTATACATATCATTCGAACTCGGCCACGATCAACGTTGATGGCGAA
AATATAATATCTAAGTTTAGCGAGATTCGATTTCCGTTGAAAAATATAAA
ggggagtctctataactcgaacacacaagaggaacacaaatttgttcgat
ttaagaaaaattcgagttatagagtaagacattgttaactgaagggatcg
TAAAACTTGCTCCAGTTAAGgaaaattcgagttatagaggttcgagttat
agaaactCCGCTGTACTTTGAGAATGATCATCCAAGTTTAATGAACTATA
AAGTTTCCATAATTATTTTCTGGTACAGTCTCCAGAGCTTgaatctctat
tattcgaatgtctccttaactctaTCAACTTTTCTTGTCCTTTCACTAAA
CAATGCTTTTTAAAccagtctctttaactcgaaaattccataactcgaac
aaatttaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021287XLOC_021287Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036194-exon-sc0001423-1491911889:4596..5154TCONS_00036194-exon-sc0001423-1491911889:4596..5154Clytia hemisphaericaexon
TCONS_00036194-exon-sc0001423-1510915933:4596..5154TCONS_00036194-exon-sc0001423-1510915933:4596..5154Clytia hemisphaericaexon
TCONS_00036194-exon-sc0001423-1575043694:4596..5154TCONS_00036194-exon-sc0001423-1575043694:4596..5154Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001423supercontigsc0001423:4596..5154 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.506825	0.988468	0.803394	1.90885	0.273393	0.108019	0.260641	0	0.0854183	0	0	0	0	0	0	0	0	0	0	0	0	0	0.116223	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036194 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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