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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036187 ID=TCONS_00036187|Name=TCONS_00036187|organism=Clytia hemisphaerica|type=transcript|length=924bp
CAAAGGACCAGTTTGGGATGAACACCACCCTACCTGGGTTCCAATCACAG
CCAATATTGTCACTTGTGAAGATGTTAAGAAATGTTGTAAGCGTACTGGC
TTTCCATTGATAACAGGTTATGCCATCACTATTGCAAAATCTCAAGGTAT
GACAATAGGGCCAAACCAACAAGTCACTAATGTTATAATTAAATTGTCTT
CTGAAACTACGATGGAACAGTTAAACTGTGGAACATCTTACACTGCTTTT
TCACGTGTTACACAGGATGAAGATTGGTGTTTAGCGGAATCAGAACCATT
TTCAAGGTTGGAATACTTGAACCGAAATCCACAACTAAAACTAAGAAAGG
AAGAGGAAAAACGACTGCAAAACCTCTCTGCAAAgacaaaatcagaaaat
atgtgCTCTATTGAACAATACTTACAATTACTCAGAGAAGTTGATTCTTT
TTGTGATGATGGTATATATGATGCCAATTGTACAGTACCTAATTGTTCTA
AATGCGTGATACACAAAAATTGAGGTAAATTTCAAGTGCATGATTAACAC
TGACAAGGACATAAATGGATgtggatttttttataagacatGCCTTTTGT
ACAGTTCACGCTAATAAAATGATAACATTTGTGGAGATTGTCGGAGTTGG
GCATTTATGTTAAAATGCATGTCTGGAAGGGTGGTTGGGAGGCccagaaa
aattaaaatgtttttgagtgtATGTCTCACTCTTCTTCAAACATTGCACC
ATCTTATATGTTAAGAAGATTTGTGCACCACACCTTTTGAATATTAAAAT
AAGAAGAATTATAAAGTAATCGGGTGTGGAAGTAGCATCCATTATGATAT
GTTAAAGCAGTCTGACAAAAAAGTCAACTTGCTAAGGATGTGAAAATTAA
GAGTGTGTGTCCCACTCTCACTTC Run BLAST on NCBI protein sequence of TCONS_00036187-protein >TCONS_00036187-protein ID=TCONS_00036187-protein|Name=TCONS_00036187-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
KGPVWDEHHPTWVPITANIVTCEDVKKCCKRTGFPLITGYAITIAKSQGM
TIGPNQQVTNVIIKLSSETTMEQLNCGTSYTAFSRVTQDEDWCLAESEPF
SRLEYLNRNPQLKLRKEEEKRLQNLSAKTKSENMCSIEQYLQLLREVDSF
CDDGIYDANCTVPNCSKCVIHKN Run BLAST on NCBI transcript from alignment at sc0001422:49770..50693 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036187 ID=TCONS_00036187|Name=TCONS_00036187|organism=Clytia hemisphaerica|type=transcript|length=924bp|location=Sequence derived from alignment at sc0001422:49770..50693 (Clytia hemisphaerica)
GAAGTGAGAGTGGGACACACACTCTTAATTTTCACATCCTTAGCAAGTTG
ACTTTTTTGTCAGACTGCTTTAACATATCATAATGGATGCTACTTCCACA
CCCGATTACTTTATAATTCTTCTTATTTTAATATTCAAAAGGTGTGGTGC
ACAAATCTTCTTAACATATAAGATGGTGCAATGTTTGAAGAAGAGTGAGA
CATacactcaaaaacattttaatttttctggGCCTCCCAACCACCCTTCC
AGACATGCATTTTAACATAAATGCCCAACTCCGACAATCTCCACAAATGT
TATCATTTTATTAGCGTGAACTGTACAAAAGGCatgtcttataaaaaaat
ccacATCCATTTATGTCCTTGTCAGTGTTAATCATGCACTTGAAATTTAC
CTCAATTTTTGTGTATCACGCATTTAGAACAATTAGGTACTGTACAATTG
GCATCATATATACCATCATCACAAAAAGAATCAACTTCTCTGAGTAATTG
TAAGTATTGTTCAATAGAGcacatattttctgattttgtcTTTGCAGAGA
GGTTTTGCAGTCGTTTTTCCTCTTCCTTTCTTAGTTTTAGTTGTGGATTT
CGGTTCAAGTATTCCAACCTTGAAAATGGTTCTGATTCCGCTAAACACCA
ATCTTCATCCTGTGTAACACGTGAAAAAGCAGTGTAAGATGTTCCACAGT
TTAACTGTTCCATCGTAGTTTCAGAAGACAATTTAATTATAACATTAGTG
ACTTGTTGGTTTGGCCCTATTGTCATACCTTGAGATTTTGCAATAGTGAT
GGCATAACCTGTTATCAATGGAAAGCCAGTACGCTTACAACATTTCTTAA
CATCTTCACAAGTGACAATATTGGCTGTGATTGGAACCCAGGTAGGGTGG
TGTTCATCCCAAACTGGTCCTTTG Coding sequence (CDS) from alignment at sc0001422:49770..50693 >TCONS_00036187 ID=TCONS_00036187|Name=TCONS_00036187|organism=Clytia hemisphaerica|type=CDS|length=522bp|location=Sequence derived from alignment at sc0001422:49770..50693 (Clytia hemisphaerica)
TCAATTTTTGTGTATCACGCATTTAGAACAATTAGGTACTGTACAATTGG
CATCATATATACCATCATCACAAAAAGAATCAACTTCTCTGAGTAATTGT
AAGTATTGTTCAATAGAGcacatattttctgattttgtcTTTGCAGAGAG
GTTTTGCAGTCGTTTTTCCTCTTCCTTTCTTAGTTTTAGTTGTGGATTTC
GGTTCAAGTATTCCAACCTTGAAAATGGTTCTGATTCCGCTAAACACCAA
TCTTCATCCTGTGTAACACGTGAAAAAGCAGTGTAAGATGTTCCACAGTT
TAACTGTTCCATCGTAGTTTCAGAAGACAATTTAATTATAACATTAGTGA
CTTGTTGGTTTGGCCCTATTGTCATACCTTGAGATTTTGCAATAGTGATG
GCATAACCTGTTATCAATGGAAAGCCAGTACGCTTACAACATTTCTTAAC
ATCTTCACAAGTGACAATATTGGCTGTGATTGGAACCCAGGTAGGGTGGT
GTTCATCCCAAACTGGTCCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036187-exon-sc0001422-1491911889:49770..50693 | TCONS_00036187-exon-sc0001422-1491911889:49770..50693 | Clytia hemisphaerica | exon |
| TCONS_00036187-exon-sc0001422-1510915933:49770..50693 | TCONS_00036187-exon-sc0001422-1510915933:49770..50693 | Clytia hemisphaerica | exon |
| TCONS_00036187-exon-sc0001422-1575043694:49770..50693 | TCONS_00036187-exon-sc0001422-1575043694:49770..50693 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001422 | supercontig | sc0001422:49770..50693 . |
Blast
The following BLAST results are available for this feature:
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