TCONS_00036182 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036182
Unique NameTCONS_00036182
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036182 ID=TCONS_00036182|Name=TCONS_00036182|organism=Clytia hemisphaerica|type=transcript|length=295bp
CTGTTCTctagtaaaatatttttaggttaATTATGCGTACAATTTTGAGA
CTACTACCACATCTATATTCCACATTTTACACAAGTATCAAAACTTTTGG
AATGATGGGAATgattttgctgatttcaaatatattaCGATAAATTTAAA
GATACAAAAATTCTACAAATATCATTTGCTTCGTTGCATTCATGTAAAGG
AAGCTtaagaaatatttcataaacTACAAAACTACAAGACAACTATACCA
CATATCAAAAACTCCATCTATCATACATCGTTTAATATATTTTCA
Run BLAST on NCBI

transcript from alignment at sc0001422:1..295

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036182 ID=TCONS_00036182|Name=TCONS_00036182|organism=Clytia hemisphaerica|type=transcript|length=295bp|location=Sequence derived from alignment at sc0001422:1..295 (Clytia hemisphaerica)
TGAAAATATATTAAACGATGTATGATAGATGGAGTTTTTGATATGTGGTA
TAGTTGTCTTGTAGTTTTGTAgtttatgaaatatttcttaAGCTTCCTTT
ACATGAATGCAACGAAGCAAATGATATTTGTAGAATTTTTGTATCTTTAA
ATTTATCGtaatatatttgaaatcagcaaaatcATTCCCATCATTCCAAA
AGTTTTGATACTTGTGTAAAATGTGGAATATAGATGTGGTAGTAGTCTCA
AAATTGTACGCATAATtaacctaaaaatattttactagAGAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021279XLOC_021279Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036182-exon-sc0001422-1491911889:1..295TCONS_00036182-exon-sc0001422-1491911889:1..295Clytia hemisphaericaexon
TCONS_00036182-exon-sc0001422-1510915933:1..295TCONS_00036182-exon-sc0001422-1510915933:1..295Clytia hemisphaericaexon
TCONS_00036182-exon-sc0001422-1575043694:1..295TCONS_00036182-exon-sc0001422-1575043694:1..295Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001422supercontigsc0001422:1..295 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.649688	0	0	0.529104	0	1.05544	0.859135	2.55837	1.64953	0.55246	2.31947	0	0.251983	0.662807	0	1.76081	0.461734	0.925254	0.690287	1.76661	4.62621	0	0	0.752952	0.75823	16.093	15.5262
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036182 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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