TCONS_00036175 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036175
Unique NameTCONS_00036175
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length303

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036175 ID=TCONS_00036175|Name=TCONS_00036175|organism=Clytia hemisphaerica|type=transcript|length=303bp
ACGTAGACATTCTCATCATTACTTGTTTTTCAGGCTAGCCGATTAGGAGC
AGAGGCTGCTTTGACAGTATTGGAAGCAGATGAGGATTCTGAAGCTTCGG
TGATGTGTCTCTGTGGACAGCAGATCGTCAAGAACCTCTCCACGAATGTG
TTGACATGTGTAATCAAATCAAAGCTGCGTACAAAGATCGAAATTTCGAC
AAAGTTATTGAACTGCGTGGTAAATCGTTTGTAAGCAGTTTGGAAATGTA
TAAAAAGATGAAACACGTCAAAGCACCAGACAGCAAACACAAAATGGGTG
TAA
Run BLAST on NCBI

transcript from alignment at sc0001421:53179..54083+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036175 ID=TCONS_00036175|Name=TCONS_00036175|organism=Clytia hemisphaerica|type=transcript|length=905bp|location=Sequence derived from alignment at sc0001421:53179..54083+ (Clytia hemisphaerica)
ACGTAGACATTCTCATCATTACTTGTTTTTCAGGCTAGCCGATTAGGAGC
AGAGGCTGCTTTGACAGTATTGGAAGCAGATGAGGATTCTGAAGCTTCGG
TGATGTGTCTCTGTGGACAGCAGATCGTCAAGAACCTCTCCACGAATGTG
TTGACATGGTAAAGTTCTTTGTTTACATATTTGCCCCCCCCTTCCATCTA
TTGTATATGTTTTtgtaaaaacagaaaaatgaagcgactgcttatgtaga
aatttttgtcatctttcgtgacttcaAAACTTCCTTTACATTTTAtgttt
tctgtttttaaaaGTATATCACTTTTAAGCATAGCCAGACTGAGATCTga
gcttgaaaacaatagatctaccttattacacgaatattactaggcaagta
ttcaacggcttTGAAATTTGCACGTtctgaaattaacacgaatttttctt
ctttttcaaggaaacagcggctggttttctaataaaatgactagtaatat
tcgtgtaataaggtattgtTATAGATAACACATAAGGGCGGTGAATGCGT
GAACATTTTTTAAAAGCTGCGTGAATGCGTTAATTGGAAAACCTTGCGTG
AACAGAAAAAGcgtaaatttggaaaaaaagctTAATTGCGTGAATGGAAG
GTCCGCTACGGGGGGCCTCACATAACGTACTAACCCGAACTTCTTTGGTC
CGAACTTCGTGAGTCTGGTACatgaatatttgaaaaagatttaaccATTT
TTTCATGTAGTGTAATCAAATCAAAGCTGCGTACAAAGATCGAAATTTCG
ACAAAGTTATTGAACTGCGTGGTAAATCGTTTGTAAGCAGTTTGGAAATG
TATAAAAAGATGAAACACGTCAAAGCACCAGACAGCAAACACAAAATGGG
TGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021274XLOC_021274Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036175-exon-sc0001421-1491911889:53179..53336TCONS_00036175-exon-sc0001421-1491911889:53179..53336Clytia hemisphaericaexon
TCONS_00036175-exon-sc0001421-1510915933:53179..53336TCONS_00036175-exon-sc0001421-1510915933:53179..53336Clytia hemisphaericaexon
TCONS_00036175-exon-sc0001421-1575043694:53179..53336TCONS_00036175-exon-sc0001421-1575043694:53179..53336Clytia hemisphaericaexon
TCONS_00036175-exon-sc0001421-1491911889:53939..54083TCONS_00036175-exon-sc0001421-1491911889:53939..54083Clytia hemisphaericaexon
TCONS_00036175-exon-sc0001421-1510915933:53939..54083TCONS_00036175-exon-sc0001421-1510915933:53939..54083Clytia hemisphaericaexon
TCONS_00036175-exon-sc0001421-1575043694:53939..54083TCONS_00036175-exon-sc0001421-1575043694:53939..54083Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001421supercontigsc0001421:53179..54083 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.74475	6.56944	2.74566	4.43653	5.82621	6.57607	10.6011	5.87459	9.89786	13.2378	5.88623	5.4409	9.95231	7.4249	7.43883	12.4601	15.3099	18.0522	13.4141	17.4854	10.1051	6.95352	14.2397	12.8974	11.678	8.34591	5.09501	4.96035	10.0104	10.0352
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036175 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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