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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036171 ID=TCONS_00036171|Name=TCONS_00036171|organism=Clytia hemisphaerica|type=transcript|length=3959bpRun BLAST on NCBI transcript from alignment at sc0001421:26611..51551+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00036171 ID=TCONS_00036171|Name=TCONS_00036171|organism=Clytia hemisphaerica|type=transcript|length=24941bp|location=Sequence derived from alignment at sc0001421:26611..51551+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00036171 vs. Swiss-Prot (Human)
Match: SCRIB (Protein scribble homolog OS=Homo sapiens GN=SCRIB PE=1 SV=4) HSP 1 Score: 262.307 bits (669), Expect = 6.088e-71 Identity = 130/209 (62.20%), Postives = 161/209 (77.03%), Query Frame = 1
Query: 1765 VEEITLKKSDGPLGLSIVGGSDHSSHPFGVNEPGIFISKVNPTGQAAKTNLCVGDRILRVNEKDMQQATHHEAVAALISNDPEIKLLVRHDPPPPGIQEIMINKKLGEKLGISIRGGAKGHPGNPLDKEDEGIFVSKVNSSGAAARDDRLKVGMRILEVNNTSLLGATHVDAVRALRTAGDNLSLIVCDGYDES-DAIEANQENVLYNP 2388
VEEI L ++ GPLGLSIVGGSDHSSHPFGV EPG+FISKV P G AA++ L VGDRIL VN +D++ ATH EAV+AL+ E+ LLVR DP PPG++E+ I K GE+LGISIRGGA+GH GNP D DEGIF+SKV+ +GAA RD RL+VG+R+LEVN SLLG TH +AV+ LR+ GD L+++VCDG++ S DA V+ NP
Sbjct: 1002 VEEIRLPRAGGPLGLSIVGGSDHSSHPFGVQEPGVFISKVLPRGLAARSGLRVGDRILAVNGQDVRDATHQEAVSALLRPCLELSLLVRRDPAPPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFEASTDAALEVSPGVIANP 1210 HSP 2 Score: 157.147 bits (396), Expect = 1.939e-38 Identity = 91/239 (38.08%), Postives = 139/239 (58.16%), Query Frame = 3
Query: 906 EEISVTVERDGLSLGINIAGGLGTTTFDQDEELSTDFEKKFDDEGVYISKITSNGPADRSGALNVGDKIIKVNEQDLSMIEHSEAVKILRVATSPVSIVVLREVTDQDQIDIALSNEK-------------NVRFAAEPEVEDIEIEAQTIPVMLKRDGKGLGFSIAGGKGATPYRGTDEGVYISRISENGPAALDKRLQVGDKLLSINGVDVRHSKHEDIVKILTSSTDKVSLVAYRE 1583
EE+++T+ R LGI+IAGG G+T + K DDEG++IS+++ GPA R+G + VGDK+++VN L EH EAV+ LR A + V + V RE + + + ++ + +R P + + + L R +GLGFSIAGGKG+TPYR D G+++SRI+E G A LQVGD++LSINGVDV ++H+ V +LT+++ ++L+ RE
Sbjct: 725 EELTLTILRQTGGLGISIAGGKGSTPY------------KGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRERMVEPENAVTITPLRPEDDYSPRERRGGGLRLPLLPPESPGPLRQRHV-ACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLERE 949 HSP 3 Score: 94.7449 bits (234), Expect = 2.258e-19 Identity = 45/102 (44.12%), Postives = 70/102 (68.63%), Query Frame = 3
Query: 1287 VEDIEIEAQTIPVMLKRDGKGLGFSIAGGKGATPYRGTDEGVYISRISENGPAALDKRLQVGDKLLSINGVDVRHSKHEDIVKILTSSTDKVSLVAYREKVI 1592
+E IE + + + + R GLG SIAGGKG+TPY+G DEG++ISR+SE GPAA ++VGDKLL +NGV ++ ++H + V+ L + V + +RE+++
Sbjct: 717 IEPARIEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAA-RAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRERMV 817 HSP 4 Score: 88.5817 bits (218), Expect = 2.152e-17 Identity = 70/221 (31.67%), Postives = 105/221 (47.51%), Query Frame = 3
Query: 918 VTVERDGLSLGINIAGGLGTTTFDQDEELSTDFEKKFDDEGVYISKITSNGPADRSGALNVGDKIIKVNEQDLSMIEHSEAVKILRVATSPVSIVVLREVTDQDQIDIALSNEKNVRFAAEPEVEDIEIEAQTIPVMLKRDGKGLGFSIAGGK---GATPYRGTDEGVYISRISENGPAALDKRLQVGDKLLSINGVDVRHSKHEDIVKILTSSTDKVSLV 1571
+ + R G LG++I GG + S F + GV+ISK+ G A RSG L VGD+I+ VN QD+ H EAV L +S++V R+ A P + ++ I+ K G+ LG SI GG P TDEG++IS++S G A D RL+VG +LL +N + H + V++L S D ++++
Sbjct: 1005 IRLPRAGGPLGLSIVGG--------SDHSSHPF--GVQEPGVFISKVLPRGLAARSG-LRVGDRILAVNGQDVRDATHQEAVSALLRPCLELSLLVRRD-------------------PAPPGLRELCIQ--------KAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVL 1187 The following BLAST results are available for this feature:
BLAST of TCONS_00036171 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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