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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036168 ID=TCONS_00036168|Name=TCONS_00036168|organism=Clytia hemisphaerica|type=transcript|length=5468bpRun BLAST on NCBI transcript from alignment at sc0001421:13809..51551+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00036168 ID=TCONS_00036168|Name=TCONS_00036168|organism=Clytia hemisphaerica|type=transcript|length=37743bp|location=Sequence derived from alignment at sc0001421:13809..51551+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00036168 vs. Swiss-Prot (Human)
Match: SCRIB (Protein scribble homolog OS=Homo sapiens GN=SCRIB PE=1 SV=4) HSP 1 Score: 445.277 bits (1144), Expect = 8.200e-129 Identity = 276/677 (40.77%), Postives = 393/677 (58.05%), Query Frame = 3
Query: 135 MFKCGSIFSFRKRWGRWQPRHLEYLDKSHCSLTLVGEDVLSHERTLEELSLEANQIQDLPKALFRMYKLRRLILADNEILDISSEIGNLISLEELDISKNDFRIIPDSIEKLKNLTHLDVSNNTLGEVPDAITKLGELRTWVCNDIALGEIPPEVGSLSNLVILELRDNCLKFLPMSFSFLSTLERLDLGGNELEELPDFIGQLSSLIELWLDNNFLTTLPPEIGELRNLQCLDVSENRVDELPEEIYGLQSLTDLILSSNVLHELPEGIGKLSHLQILKLDSNEIDELTEKVGNCTEMSELILTDNVIEYLPSAIGRMTKLTHMNIDRNRLFTLPPEIGKCVHLSVLSARDNQIAKIPDEIGNCKSMTVLALSGNKLENLPLSISTLHLKALWLSQNQSQSVLKLQVEEIEKTQERVLTCFLFPQERLKAASLEDFIKETDGEGDDGKVWKSFSPSAVTF----------GGNNDDENKESNLQRRGTPYPKDLRDRHPHLIRKRSGSQDXXXXXXXXXXXXXXXXXXGEADPLSPNHES----KKKGGISFGESPIVIKSAPGGGIGGMVNPAAVFDNPAANFDAESEEHDNTSDHDYENSDTEGRRRVGFDFVEDEHVPERDTRFDVEDDDVC--------RLTRKDTPHHLKGKRIGKNDDDSQLQNILQTIR 2099
M KC ++ RH+E +DK HCSL V E++ + R+LEEL L+ANQ+++LPK FR+ LR+L L+DNEI + E+ N + L ELD+S+ND IP+SI+ K L D S N L +PD T+L L ND++L +P +VG+L+NLV LELR+N LK LP S SFL LE+LDLGGN+LE LPD +G L +L ELWLD N L+ LPPE+G LR L CLDVSENR++ELP E+ GL LTDL+LS N+L LP+GIG+L L ILK+D N + E+TE +G+C +SELILT+N++ LP ++G++TKLT++N+DRN L LPPEIG CV LSVLS RDN++A +P E+ + + VL ++GN+L++LP +++ L+LKALWL++NQ+Q +L+ Q E+ +T E+VLTC+L PQ+ SLED + +G + W PS V+ + ++ LQRR TP+P +L+ + KRS R EA P P+ S +++ +S ES + S P P + P+A S++ T+ E E + F ED +P D + + RL RKDTPH+ K +I K + +LQ ++
Sbjct: 1 MLKCIPLWRCN--------RHVESVDKRHCSLQAVPEEIYRYSRSLEELLLDANQLRELPKPFFRLLNLRKLGLSDNEIQRLPPEVANFMQLVELDVSRNDIPEIPESIKFCKALEIADFSGNPLSRLPDGFTQLRSLAHLALNDVSLQALPGDVGNLANLVTLELRENLLKSLPASLSFLVKLEQLDLGGNDLEVLPDTLGALPNLRELWLDRNQLSALPPELGNLRRLVCLDVSENRLEELPAELGGLVLLTDLLLSQNLLRRLPDGIGQLKQLSILKVDQNRLCEVTEAIGDCENLSELILTENLLMALPRSLGKLTKLTNLNVDRNHLEALPPEIGGCVALSVLSLRDNRLAVLPPELAHTTELHVLDVAGNRLQSLPFALTHLNLKALWLAENQAQPMLRFQTEDDARTGEKVLTCYLLPQQ--PPPSLEDAGQ----QGSLSETWSDAPPSRVSVIQFLEAPIGDEDAEEAAAEKRGLQRRATPHPSELK------VMKRS-----------------IEGRRSEACPCQPDSGSPLPAEEEKRLS-AESGLSEDSRPSASTVSEAEP----EGPSAEAQGGSQQEATTAGG--EEDAEEDYQEPTVHFAEDALLPGDDREIEEGQPEAPWTLPGGRQRLIRKDTPHYKKHFKISKLPQPEAVVALLQGMQ 633 HSP 2 Score: 262.307 bits (669), Expect = 2.347e-70 Identity = 130/209 (62.20%), Postives = 161/209 (77.03%), Query Frame = 1
Query: 3274 VEEITLKKSDGPLGLSIVGGSDHSSHPFGVNEPGIFISKVNPTGQAAKTNLCVGDRILRVNEKDMQQATHHEAVAALISNDPEIKLLVRHDPPPPGIQEIMINKKLGEKLGISIRGGAKGHPGNPLDKEDEGIFVSKVNSSGAAARDDRLKVGMRILEVNNTSLLGATHVDAVRALRTAGDNLSLIVCDGYDES-DAIEANQENVLYNP 3897
VEEI L ++ GPLGLSIVGGSDHSSHPFGV EPG+FISKV P G AA++ L VGDRIL VN +D++ ATH EAV+AL+ E+ LLVR DP PPG++E+ I K GE+LGISIRGGA+GH GNP D DEGIF+SKV+ +GAA RD RL+VG+R+LEVN SLLG TH +AV+ LR+ GD L+++VCDG++ S DA V+ NP
Sbjct: 1002 VEEIRLPRAGGPLGLSIVGGSDHSSHPFGVQEPGVFISKVLPRGLAARSGLRVGDRILAVNGQDVRDATHQEAVSALLRPCLELSLLVRRDPAPPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFEASTDAALEVSPGVIANP 1210 HSP 3 Score: 162.155 bits (409), Expect = 1.029e-39 Identity = 89/227 (39.21%), Postives = 138/227 (60.79%), Query Frame = 3
Query: 2451 EEISVTVERDGLSLGINIAGGLGTTTFDQDEEGVYISKITSNGPADRSGALNVGDKIIKVNEQDLSMIEHSEAVKILRVATSPVSIVVLREVTDQDQIDIALSNEK-------------NVRFAAEPEVEDIEIEAQTIPVMLKRDGKGLGFSIAGGKGATPYRGTDEGVYISRISENGPAALDKRLQVGDKLLSINGVDVRHSKHEDIVKILTSSTDKVSLVAYRE 3092
EE+++T+ R LGI+IAGG G+T + D+EG++IS+++ GPA R+G + VGDK+++VN L EH EAV+ LR A + V + V RE + + + ++ + +R P + + + L R +GLGFSIAGGKG+TPYR D G+++SRI+E G A LQVGD++LSINGVDV ++H+ V +LT+++ ++L+ RE
Sbjct: 725 EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRERMVEPENAVTITPLRPEDDYSPRERRGGGLRLPLLPPESPGPLRQRHV-ACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLERE 949 HSP 4 Score: 95.5153 bits (236), Expect = 2.098e-19 Identity = 45/102 (44.12%), Postives = 70/102 (68.63%), Query Frame = 3
Query: 2796 VEDIEIEAQTIPVMLKRDGKGLGFSIAGGKGATPYRGTDEGVYISRISENGPAALDKRLQVGDKLLSINGVDVRHSKHEDIVKILTSSTDKVSLVAYREKVI 3101
+E IE + + + + R GLG SIAGGKG+TPY+G DEG++ISR+SE GPAA ++VGDKLL +NGV ++ ++H + V+ L + V + +RE+++
Sbjct: 717 IEPARIEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAA-RAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRERMV 817 HSP 5 Score: 93.5893 bits (231), Expect = 9.025e-19 Identity = 71/216 (32.87%), Postives = 106/216 (49.07%), Query Frame = 3
Query: 2448 YEEISVTVERDGLSLGINIAGGLGTTT--FDQDEEGVYISKITSNGPADRSGALNVGDKIIKVNEQDLSMIEHSEAVKILRVATSPVSIVVLREVTDQDQIDIALSNEKNVRFAAEPEVEDIEIEAQTIPVMLKRDGKGLGFSIAGGK---GATPYRGTDEGVYISRISENGPAALDKRLQVGDKLLSINGVDVRHSKHEDIVKILTSSTDKVSLV 3080
Y + + R G LG++I GG ++ F E GV+ISK+ G A RSG L VGD+I+ VN QD+ H EAV L +S++V R+ A P + ++ I+ K G+ LG SI GG P TDEG++IS++S G A D RL+VG +LL +N + H + V++L S D ++++
Sbjct: 1000 YPVEEIRLPRAGGPLGLSIVGGSDHSSHPFGVQEPGVFISKVLPRGLAARSG-LRVGDRILAVNGQDVRDATHQEAVSALLRPCLELSLLVRRD-------------------PAPPGLRELCIQ--------KAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVL 1187 The following BLAST results are available for this feature:
BLAST of TCONS_00036168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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