TCONS_00036166 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036166
Unique NameTCONS_00036166
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036166 ID=TCONS_00036166|Name=TCONS_00036166|organism=Clytia hemisphaerica|type=transcript|length=367bp
CTCTGAATTCTTCTCCCGTATACGTGATGAAGTATTGACATATGTATTGG
GTTTTCGATATCTAACAAGTGGTTTTTCTCCATTGTGGTAAATAATAAGT
AATACTTGTTCATGACTTTCGCGAAAACGTCTCTCCATAGCCGTTCTATT
CGTATGTTGTGGACAGGTTTCCCAGCAATCCAACTGTTGTGATGGTCACC
ATCAATAGCTACAATCAGATTTTTCATGTGTACAAACTCACCACCTTTGT
CAATCCTGATTCGACTCGGGATTCCTCTCTCCCTAATACCAGTGATATAA
TCAGATAACATTGTAAATGCCTTGTTATTTGTGTGTACATGTAAATATGG
AACCAGTCTACTGTAAC
Run BLAST on NCBI

protein sequence of TCONS_00036166-protein

>TCONS_00036166-protein ID=TCONS_00036166-protein|Name=TCONS_00036166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
YSRLVPYLHVHTNNKAFTMLSDYITGIRERGIPSRIRIDKGGEFVHMKNL
IVAIDGDHHNSWIAGKPVHNIRIERLWRDVFAKVMNKYYLLFTTMEKNHL
LDIENPIHMSILHHVYGRRIQ
Run BLAST on NCBI

transcript from alignment at sc0001420:51313..51679

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036166 ID=TCONS_00036166|Name=TCONS_00036166|organism=Clytia hemisphaerica|type=transcript|length=367bp|location=Sequence derived from alignment at sc0001420:51313..51679 (Clytia hemisphaerica)
GTTACAGTAGACTGGTTCCATATTTACATGTACACACAAATAACAAGGCA
TTTACAATGTTATCTGATTATATCACTGGTATTAGGGAGAGAGGAATCCC
GAGTCGAATCAGGATTGACAAAGGTGGTGAGTTTGTACACATGAAAAATC
TGATTGTAGCTATTGATGGTGACCATCACAACAGTTGGATTGCTGGGAAA
CCTGTCCACAACATACGAATAGAACGGCTATGGAGAGACGTTTTCGCGAA
AGTCATGAACAAGTATTACTTATTATTTACCACAATGGAGAAAAACCACT
TGTTAGATATCGAAAACCCAATACATATGTCAATACTTCATCACGTATAC
GGGAGAAGAATTCAGAG

Coding sequence (CDS) from alignment at sc0001420:51313..51679

>TCONS_00036166 ID=TCONS_00036166|Name=TCONS_00036166|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at sc0001420:51313..51679 (Clytia hemisphaerica)
TACAGTAGACTGGTTCCATATTTACATGTACACACAAATAACAAGGCATT
TACAATGTTATCTGATTATATCACTGGTATTAGGGAGAGAGGAATCCCGA
GTCGAATCAGGATTGACAAAGGTGGTGAGTTTGTACACATGAAAAATCTG
ATTGTAGCTATTGATGGTGACCATCACAACAGTTGGATTGCTGGGAAACC
TGTCCACAACATACGAATAGAACGGCTATGGAGAGACGTTTTCGCGAAAG
TCATGAACAAGTATTACTTATTATTTACCACAATGGAGAAAAACCACTTG
TTAGATATCGAAAACCCAATACATATGTCAATACTTCATCACGTATACGG
GAGAAGAATTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021272XLOC_021272Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036166-proteinTCONS_00036166-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036166-exon-sc0001420-1491911889:51313..51679TCONS_00036166-exon-sc0001420-1491911889:51313..51679Clytia hemisphaericaexon
TCONS_00036166-exon-sc0001420-1510915933:51313..51679TCONS_00036166-exon-sc0001420-1510915933:51313..51679Clytia hemisphaericaexon
TCONS_00036166-exon-sc0001420-1575043694:51313..51679TCONS_00036166-exon-sc0001420-1575043694:51313..51679Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001420supercontigsc0001420:51313..51679 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.55311	1.63965	4.36667	5.65816	2.40703	5.44908	5.11776	2.14446	0.786087	1.60188	0	0	0	0	0	0	0.217101	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036166 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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