TCONS_00036165 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036165
Unique NameTCONS_00036165
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036165 ID=TCONS_00036165|Name=TCONS_00036165|organism=Clytia hemisphaerica|type=transcript|length=381bp
CGTTGGCTTCCTCTTCACCGACCACTTTAAGGAGATTCGAAAATGCATCT
TCTACAAATTGCTTAGTCTCCGTTGTGAGACAGTAGTGATGAAGTTGACT
TTGGTAGTCCTCCAAACATCCTTCGCACATTTCTCGCCGCACTTGCAAGA
CTTTTTCTCGCATGATCTTAAAAAACACGTTTTGCATTTCATTCTTGAAC
TTCTTTCGTTTCCATTCCAAAAGATAACCAGTGACATTAGCAATGAGAAG
ATCAGCTTTGTCAGGAGAGAAAATGATTAAGTTGGTATGTTGCCCACTAA
GTTTTTGAGTTATGATAAAGAATTCCTCTTCTCGATCAAAGTAGTTTTCG
ACATTGAAATTTAAGGTTCGGTCATTCTTCC
Run BLAST on NCBI

protein sequence of TCONS_00036165-protein

>TCONS_00036165-protein ID=TCONS_00036165-protein|Name=TCONS_00036165-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
KNDRTLNFNVENYFDREEEFFIITQKLSGQHTNLIIFSPDKADLLIANVT
GYLLEWKRKKFKNEMQNVFFKIMREKVLQVRREMCEGCLEDYQSQLHHYC
LTTETKQFVEDAFSNLLKVVGEEEAN
Run BLAST on NCBI

transcript from alignment at sc0001420:47064..47444

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036165 ID=TCONS_00036165|Name=TCONS_00036165|organism=Clytia hemisphaerica|type=transcript|length=381bp|location=Sequence derived from alignment at sc0001420:47064..47444 (Clytia hemisphaerica)
GGAAGAATGACCGAACCTTAAATTTCAATGTCGAAAACTACTTTGATCGA
GAAGAGGAATTCTTTATCATAACTCAAAAACTTAGTGGGCAACATACCAA
CTTAATCATTTTCTCTCCTGACAAAGCTGATCTTCTCATTGCTAATGTCA
CTGGTTATCTTTTGGAATGGAAACGAAAGAAGTTCAAGAATGAAATGCAA
AACGTGTTTTTTAAGATCATGCGAGAAAAAGTCTTGCAAGTGCGGCGAGA
AATGTGCGAAGGATGTTTGGAGGACTACCAAAGTCAACTTCATCACTACT
GTCTCACAACGGAGACTAAGCAATTTGTAGAAGATGCATTTTCGAATCTC
CTTAAAGTGGTCGGTGAAGAGGAAGCCAACG

Coding sequence (CDS) from alignment at sc0001420:47064..47444

>TCONS_00036165 ID=TCONS_00036165|Name=TCONS_00036165|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at sc0001420:47064..47444 (Clytia hemisphaerica)
AAGAATGACCGAACCTTAAATTTCAATGTCGAAAACTACTTTGATCGAGA
AGAGGAATTCTTTATCATAACTCAAAAACTTAGTGGGCAACATACCAACT
TAATCATTTTCTCTCCTGACAAAGCTGATCTTCTCATTGCTAATGTCACT
GGTTATCTTTTGGAATGGAAACGAAAGAAGTTCAAGAATGAAATGCAAAA
CGTGTTTTTTAAGATCATGCGAGAAAAAGTCTTGCAAGTGCGGCGAGAAA
TGTGCGAAGGATGTTTGGAGGACTACCAAAGTCAACTTCATCACTACTGT
CTCACAACGGAGACTAAGCAATTTGTAGAAGATGCATTTTCGAATCTCCT
TAAAGTGGTCGGTGAAGAGGAAGCCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021271XLOC_021271Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036165-proteinTCONS_00036165-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036165-exon-sc0001420-1491911889:47064..47444TCONS_00036165-exon-sc0001420-1491911889:47064..47444Clytia hemisphaericaexon
TCONS_00036165-exon-sc0001420-1510915933:47064..47444TCONS_00036165-exon-sc0001420-1510915933:47064..47444Clytia hemisphaericaexon
TCONS_00036165-exon-sc0001420-1575043694:47064..47444TCONS_00036165-exon-sc0001420-1575043694:47064..47444Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001420supercontigsc0001420:47064..47444 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.206266	0.103767	0.233545	0	0.822619	1.64823	5.96314	5.09948	2.7085	4.07533	1.76734	1.40428	1.88289	0.302471	0.598964	0.654891	0	0.72005	4.60342	5.29467	1.02966	1.43632	0.2365	0	1.39152	2.63227	0	1.04491	0.906089	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014746Gln_synth/guanido_kin_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036165 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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