TCONS_00036163 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036163
Unique NameTCONS_00036163
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length481

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036163 ID=TCONS_00036163|Name=TCONS_00036163|organism=Clytia hemisphaerica|type=transcript|length=481bp
TGACAATCTTCTTCACAGATCAGTTCATCAGCATCCGCAGTCGACCAGAT
GCACCTCTTCTTGGATTCAAACCAACACATCCAGCTCAACCAATCAAGAC
TGAAGTTCACCTGTCAACAGCAATGCGAGTGTTCAAAGAAGTAGAAGCAG
CTAGCAGTGAAATATCGTACAGATGCCCCAAACGCAGAGAATGCAAAGAC
TGCAAGCACGACTGAAACGAAACCATCAGCATCAGAGAAGAAGTTGAACA
AACAATCATCAACAAGTCAGTAACAATCGACTTCGACAAAAGCATCACAA
CAGCTCATCTACCATTTACTACTGACCCAACCAAACGTCTCTCCAACAAC
CGTGAGAAGGCAATGAAAGTGTACCAACAACAGATAAAAAAGCTCAACAA
TCCAAAGAATTTCCATGACAAACAAGACATCCTTGAATCAGAAGGAAAGC
TACATCAATTAGGGTATGTCGATTACGTCAC
Run BLAST on NCBI

transcript from alignment at sc0001420:29284..29764

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036163 ID=TCONS_00036163|Name=TCONS_00036163|organism=Clytia hemisphaerica|type=transcript|length=481bp|location=Sequence derived from alignment at sc0001420:29284..29764 (Clytia hemisphaerica)
GTGACGTAATCGACATACCCTAATTGATGTAGCTTTCCTTCTGATTCAAG
GATGTCTTGTTTGTCATGGAAATTCTTTGGATTGTTGAGCTTTTTTATCT
GTTGTTGGTACACTTTCATTGCCTTCTCACGGTTGTTGGAGAGACGTTTG
GTTGGGTCAGTAGTAAATGGTAGATGAGCTGTTGTGATGCTTTTGTCGAA
GTCGATTGTTACTGACTTGTTGATGATTGTTTGTTCAACTTCTTCTCTGA
TGCTGATGGTTTCGTTTCAGTCGTGCTTGCAGTCTTTGCATTCTCTGCGT
TTGGGGCATCTGTACGATATTTCACTGCTAGCTGCTTCTACTTCTTTGAA
CACTCGCATTGCTGTTGACAGGTGAACTTCAGTCTTGATTGGTTGAGCTG
GATGTGTTGGTTTGAATCCAAGAAGAGGTGCATCTGGTCGACTGCGGATG
CTGATGAACTGATCTGTGAAGAAGATTGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021269XLOC_021269Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036163-exon-sc0001420-1491911889:29284..29764TCONS_00036163-exon-sc0001420-1491911889:29284..29764Clytia hemisphaericaexon
TCONS_00036163-exon-sc0001420-1510915933:29284..29764TCONS_00036163-exon-sc0001420-1510915933:29284..29764Clytia hemisphaericaexon
TCONS_00036163-exon-sc0001420-1575043694:29284..29764TCONS_00036163-exon-sc0001420-1575043694:29284..29764Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001420supercontigsc0001420:29284..29764 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.69563	1.27193	0.590731	0.866907	2.28665	1.52895	0.670768	1.8839	0.219827	0.680727	0.396438	0.434338	0.173494	0.270262	0.0740641	0.158964	0.0979155	0.20072	0	0.14509	0	0.738144	0.149552	0.679821	1.26036	1.99972	0.357699	0.381746	0.723852	1.32748
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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