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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036162 ID=TCONS_00036162|Name=TCONS_00036162|organism=Clytia hemisphaerica|type=transcript|length=1256bp
GTATCATTTTGTGGACCCAAATACTGGAGCACACACACAGAACATCGAGT
CCTACTGGAACAGGTTTAAGCATGGAATTAAATCAATGAAAGGAGTTAGA
AGAGTGGATCTGACCAGTTATTTAAAGGAATTTATATGGCGTGATTGGTA
TGGTTTAGATGCCCCTTTGGACAATATCATCCAAGCTATCAACATCGACT
ATCCACTATAGAAGATGATTCATTTCCTTGGCTGCTGACAAACTTAACCG
atcttttgttactttttatttattagtttttgtcACATTATCGTACACAT
GTAAATAGCTAAACCTATATACAATTCAAGTTTCAGAAGTTtgtactttc
tttttattattgtaATCAGAAAGACATTGTTGCGTTTCATAAATATTTGG
TTCTTTGGCTTATGTTGCCTGTCAAGATACCGAAAATGaagaggaaaaaa
ttatttgttaGAGTCACGAGAAAAGCATATCTTCCCGCGGGTTTTTTTTT
CCTATCCCTCTTCCAATACCATGATGCATTACCCAAAACTGAAATACGAT
ATCGTTTAATAGACCTTCAACActttaaacatcaaattttcGAACTCTTT
TGGCCTTTCCACGAAGCATTATTGTATAAGTATACGGACAATAAAACCTA
CTCAATTCTAAGCCACTGCGTCTTGGCCCAAATTACTTAGAGATAGAAAT
TACAAACAATCAGTCTCCTTAAATCAGGCTCAGAAAGCTTCAAGAGTTTT
GGCATacgcctagatatgcttatactTTGGGTATTGGTGGACCAGTGATT
TTGGGTTaatagtggaccagtcgagGATTTGGGGTAAAAAGTGAACCagt
gagatattttgggtaaatagtggatcagtgagacattttgggtaaatagt
ggaccagtgacatattttgggtaaacgatggaccagtgagatattttggg
taaatagtggaccagtgagacattttgggtaaatagtggaccagtgagat
attctgggtaaatagtggaccagtgagacattttgggtaaatagtggacc
agtgagacattttgggtaaatagtggaccagtgacatattttgggtaaat
agtgGACCAgtgagatattttgggtaaatagtggaccagtgacatatttt
gggtaaatagtggactagtgacatattttgggtaaatagtggaccagtga
catattttgggtaaatagtggaccagtgacatattttgggtaaatagtgg
accagt Run BLAST on NCBI transcript from alignment at sc0001420:60956..62739- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036162 ID=TCONS_00036162|Name=TCONS_00036162|organism=Clytia hemisphaerica|type=transcript|length=1784bp|location=Sequence derived from alignment at sc0001420:60956..62739- (Clytia hemisphaerica)
GTATCATTTTGTGGACCCAAATACTGGAGCACACACACAGGTTTGTTATT
AGTTTACGCTTGATTAACGTTTATCATTCTTGACTGGTTTAACTTGATTA
AGTATAACGCAATAATTTGAAGGGAACAATTTTAAGTCGACGAAGCGGAA
AATATCTTTTTTACGGTACTTTTTTGAAAATATGTCTTTGAAGCTTAAAG
TACATTTTTAACAACTCTTCTCTTTTAAGAACATCGAGTCCTACTGGAAC
AGGTTTAAGCATGGAATTAAATCAATGAAAGGAGTTAGAAGAGTGGATCT
GACCAGTTATTTAAAGGAATTTATATGGCGGTAAGTTGAATTTGCTCAAT
CTTTTGAATAATTTGCTAGCATTTATTGTGATGTTATTTACTTTTTGCTA
AAGAAAACCCACAATTTTTAATCTTTTAAATTAAATTCTAAATTTTGTTT
TTCTTCTCTAGTGATTGGTATGGTTTAGATGCCCCTTTGGACAATATCAT
CCAAGCTATCAACATCGACTATCCACTATAGAAGGTAAAAGCAGTAGATT
TCTAACATTCATAAATTTTGAGATTGTTTAGAGAATATGGGTTTTTACCA
CGTTTTCCATGTGCAGTATTTGAGAATTATTGCATTTCCCAAAGCTCAAA
ATTTTCTGTTGTAACAGTTTTATTTTCTACATTTTTAGATGATTCATCNT
CAAAATTTTCTGTTGTAACAGTTTTATTTTCTACATCTTTAGATGATTCA
TTTCCTTGGCTGCTGACAAACTTAACCGATCTTTTGTTACTTTTTATTTA
TTAGTTTTTGTCACATTATCGTACACATGTAAATAGCTAAACCTATATAC
AATTCAAGTTTCAGAAGTTTGTACTTTCTTTTTATTATTGTAATCAGAAA
GACATTGTTGCGTTTCATAAATATTTGGTTCTTTGGCTTATGTTGCCTGT
CAAGATACCGAAAATGAAGAGGAAAAAATTATTTGTTAGAGTCACGAGAA
AAGCATATCTTCCCGCGGGTTTTTTTTTCCTATCCCTCTTCCAATACCAT
GATGCATTACCCAAAACTGAAATACGATATCGTTTAATAGACCTTCAACA
CTTTAAACATCAAATTTTCGAACTCTTTTGGCCTTTCCACGAAGCATTAT
TGTATAAGTATACGGACAATAAAACCTACTCAATTCTAAGCCACTGCGTC
TTGGCCCAAATTACTTAGAGATAGAAATTACAAACAATCAGTCTCCTTAA
ATCAGGCTCAGAAAGCTTCAAGAGTTTTGGCATACGCCTAGATATGCTTA
TACTTTGGGTATTGGTGGACCAGTGATTTTGGGTTAATAGTGGACCAGTC
GAGGATTTGGGGTAAAAAGTGAACCAGTGAGATATTTTGGGTAAATAGTG
GATCAGTGAGACATTTTGGGTAAATAGTGGACCAGTGACATATTTTGGGT
AAACGATGGACCAGTGAGATATTTTGGGTAAATAGTGGACCAGTGAGACA
TTTTGGGTAAATAGTGGACCAGTGAGATATTCTGGGTAAATAGTGGACCA
GTGAGACATTTTGGGTAAATAGTGGACCAGTGAGACATTTTGGGTAAATA
GTGGACCAGTGACATATTTTGGGTAAATAGTGGACCAGTGAGATATTTTG
GGTAAATAGTGGACCAGTGACATATTTTGGGTAAATAGTGGACTAGTGAC
ATATTTTGGGTAAATAGTGGACCAGTGACATATTTTGGGTAAATAGTGGA
CCAGTGACATATTTTGGGTAAATAGTGGACCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036162-exon-sc0001420-1575043694:62700..62739 | TCONS_00036162-exon-sc0001420-1575043694:62700..62739 | Clytia hemisphaerica | exon |
| TCONS_00036162-exon-sc0001420-1575043694:62410..62510 | TCONS_00036162-exon-sc0001420-1575043694:62410..62510 | Clytia hemisphaerica | exon |
| TCONS_00036162-exon-sc0001420-1575043694:62206..62278 | TCONS_00036162-exon-sc0001420-1575043694:62206..62278 | Clytia hemisphaerica | exon |
| TCONS_00036162-exon-sc0001420-1575043694:60956..61997 | TCONS_00036162-exon-sc0001420-1575043694:60956..61997 | Clytia hemisphaerica | exon |
| TCONS_00036162-exon-sc0001420-1510915933:62700..62739 | TCONS_00036162-exon-sc0001420-1510915933:62700..62739 | Clytia hemisphaerica | exon |
| TCONS_00036162-exon-sc0001420-1510915933:62410..62510 | TCONS_00036162-exon-sc0001420-1510915933:62410..62510 | Clytia hemisphaerica | exon |
| TCONS_00036162-exon-sc0001420-1510915933:62206..62278 | TCONS_00036162-exon-sc0001420-1510915933:62206..62278 | Clytia hemisphaerica | exon |
| TCONS_00036162-exon-sc0001420-1510915933:60956..61997 | TCONS_00036162-exon-sc0001420-1510915933:60956..61997 | Clytia hemisphaerica | exon |
| TCONS_00036162-exon-sc0001420-1491911889:62700..62739 | TCONS_00036162-exon-sc0001420-1491911889:62700..62739 | Clytia hemisphaerica | exon |
| TCONS_00036162-exon-sc0001420-1491911889:62410..62510 | TCONS_00036162-exon-sc0001420-1491911889:62410..62510 | Clytia hemisphaerica | exon |
| TCONS_00036162-exon-sc0001420-1491911889:62206..62278 | TCONS_00036162-exon-sc0001420-1491911889:62206..62278 | Clytia hemisphaerica | exon |
| TCONS_00036162-exon-sc0001420-1491911889:60956..61997 | TCONS_00036162-exon-sc0001420-1491911889:60956..61997 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001420 | supercontig | sc0001420:60956..62739 - |
Blast
The following BLAST results are available for this feature:
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