TCONS_00036159 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036159
Unique NameTCONS_00036159
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length521

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036159 ID=TCONS_00036159|Name=TCONS_00036159|organism=Clytia hemisphaerica|type=transcript|length=521bp
CTTGTTACCAGAATGAAACTGTGTGTCAAGAATGTTCGGAGCAAGGTCAG
CAAGATGTGATTCCATCACTTAGAGCATGTCAATATTGCCTGAAGAACAA
TCTGAAATGTGTCAGAAGGGTTGTTATGGTCATCACTGTTGATTGTGAAT
CAGgaaacaaaaattgtttaaaacagCTTCAAAATGAACTCATCAATAAG
ACGATTGATCCACACCTTCTGCTTCTATCGATTTTACCAGATACACCTCA
TGTCCTAAAACATGTAAAGCAAGTTTTGCTAATTGGTATTTGCAGTTCAA
TGAAGAACGCGGATGCCTGTCAATTTTCTACACACTCAGAAATCGAAGCG
ACCCAAGTGTCCGCAACACCATTGAACGTTTCTTGAAAAGCAATGATTAT
GTTCGTAACAGAGATCGACAAAACCCATCTGCTGTTTTGGCACTTTGCAA
CCCAAACCTTTTGGATTATATCGAAACTCTAGgGTTCGTGACTCATACTA
TCGTACCGGAATCCATTCGAC
Run BLAST on NCBI

protein sequence of TCONS_00036159-protein

>TCONS_00036159-protein ID=TCONS_00036159-protein|Name=TCONS_00036159-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
CYQNETVCQECSEQGQQDVIPSLRACQYCLKNNLKCVRRVVMVITVDCES
GNKNCLKQLQNELINKTIDPHLLLLSILPDTPHVLKHVKQVLLIGICSSM
KNADACQFSTHSEIEATQVSATPLNVS
Run BLAST on NCBI

transcript from alignment at sc0001420:39030..39870+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036159 ID=TCONS_00036159|Name=TCONS_00036159|organism=Clytia hemisphaerica|type=transcript|length=841bp|location=Sequence derived from alignment at sc0001420:39030..39870+ (Clytia hemisphaerica)
CTTGTTACCAGAATGAAACTGTGTGTCAAGAATGTTCGGAGCAAGGTCAG
CAAGATGTGATTCCATCACTTAGAGCATGTCAATATTGCCTGAAGAACAA
TCTGAAATGTGTCAGAAGGGTTGTTATGGTCATCACTGTTGATTGTGAAT
CAGgaaacaaaaattgtttaaaacagCTTCAAAATGAACTCATCAATAAG
ACGATTGATCCACACCTTCTGCTTCTATCGATTTTACCAGATACACCTCA
TGTCCTAAAACATGTAAAGCAAGTTTTGCTAATTGGTATTTGCAGTTCAA
TGAAGAACGCGGATGCCTGTCAATTTTCTACACACTCAGAAATCGAAGCG
ACCCAAGTGTCCGCAACACCATTGAACGTTTCTTGAAAAGCAATGATTAT
GTTCGTAACAGAGATCGACAAAACCCATCTGCTGTTTTGGCACTTTGCAA
CCCAAACCTTTTGGATTATATCGAAACTCTAGGTACATACTTCATTTCAT
TCTTATATAGTTATAGTACATACTCCATTTCATTTCATAAGCCTTGTACT
AATAGATTATTTCATTCTTCCTTTCTGTTGTATAAAAGATATCTCATATC
ACAGACCTAAGGGACCCCATCTCCACCCATATCGACAGTTAGCTCCTTCA
TTTTTTCTACCCTGGGTAAAGGATTTTCACCagatcactgagacaggggt
ggttTCTTTAAAAGTGACATTATTTTCATCATTCGAtagaatgaaagttt
tttctcaTTTAGCATTTTTAGATTATTATGTattgtttcatttcatttta
aggGTTCGTGACTCATACTATCGTACCGGAATCCATTCGAC

Coding sequence (CDS) from alignment at sc0001420:39030..39870+

>TCONS_00036159 ID=TCONS_00036159|Name=TCONS_00036159|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at sc0001420:39030..39870+ (Clytia hemisphaerica)
TGTTACCAGAATGAAACTGTGTGTCAAGAATGTTCGGAGCAAGGTCAGCA
AGATGTGATTCCATCACTTAGAGCATGTCAATATTGCCTGAAGAACAATC
TGAAATGTGTCAGAAGGGTTGTTATGGTCATCACTGTTGATTGTGAATCA
GgaaacaaaaattgtttaaaacagCTTCAAAATGAACTCATCAATAAGAC
GATTGATCCACACCTTCTGCTTCTATCGATTTTACCAGATACACCTCATG
TCCTAAAACATGTAAAGCAAGTTTTGCTAATTGGTATTTGCAGTTCAATG
AAGAACGCGGATGCCTGTCAATTTTCTACACACTCAGAAATCGAAGCGAC
CCAAGTGTCCGCAACACCATTGAACGTTTCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021265XLOC_021265Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036159-proteinTCONS_00036159-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036159-exon-sc0001420-1491911889:39030..39511TCONS_00036159-exon-sc0001420-1491911889:39030..39511Clytia hemisphaericaexon
TCONS_00036159-exon-sc0001420-1510915933:39030..39511TCONS_00036159-exon-sc0001420-1510915933:39030..39511Clytia hemisphaericaexon
TCONS_00036159-exon-sc0001420-1575043694:39030..39511TCONS_00036159-exon-sc0001420-1575043694:39030..39511Clytia hemisphaericaexon
TCONS_00036159-exon-sc0001420-1491911889:39832..39870TCONS_00036159-exon-sc0001420-1491911889:39832..39870Clytia hemisphaericaexon
TCONS_00036159-exon-sc0001420-1510915933:39832..39870TCONS_00036159-exon-sc0001420-1510915933:39832..39870Clytia hemisphaericaexon
TCONS_00036159-exon-sc0001420-1575043694:39832..39870TCONS_00036159-exon-sc0001420-1575043694:39832..39870Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001420supercontigsc0001420:39030..39870 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.110886	0	0	0.460036	0.121175	0.292386	0.136864	0.0958218	0	0	0.151461	0.529378	0	0	0.623629	0.0853622	0.349974	0	0	0.109942	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036159 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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