TCONS_00036151 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036151
Unique NameTCONS_00036151
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036151 ID=TCONS_00036151|Name=TCONS_00036151|organism=Clytia hemisphaerica|type=transcript|length=1838bp
AAGTGGTTATCTGGACTGGCAAGTTTTGCTCTGAGGGGAGCATTACAGCA
CAGCTTCATTGACGCACCACTCATACCTCAAAGCAAATACGACAAAACAC
TTGGACTTGATGATGAAACCAACAAGAAATTTCCTTTGGTTGTTTTTAGT
CATGGTTTGATCGGGTTCCGTCATATTTATTCGACTTTTTGCAGTGATTT
AGCTTCACATGGTTATGTTGTGGCCTCCGTTGAACACAGAGACGGCTCAG
CCCTACCTACATACTTCATGGACCCTGAGACAAACAAAGCAACTTCTTTA
CCTTATATGGACCATCCGACAACTGAAAACGCTGATGAAGAAATTATCCA
AATGAGAAATAAACAGGTCAACAGACGAGCTGAGGAAGTCAGTAAGCTGC
TAGACTTGTTACACGTTGTAAATAAAGAGCCAGAAATTATTGAAAACCTT
TTTCCATCAACGTTTGATCTGAAAAcattaaagGGCCGTTTGGACGTTGA
GGAACCATTGATCATTGGTCATTCTTTCGGTGGTGCAACAACGTTGAACT
CTATCAATAAAGATGATCGCTTCAAGTGTGCCATAGTGTTGGATCCTTGG
TTTTTACCACTGACAGAAGATGAATTTTACGAAAGTGGTCTCAAGAAACC
AACATTCACTATCTTCACTGAGAGATTCAACTggaataagaacatccaac
gaTGTCAAAGGTTTCTGGATGGGCTACCTAAAGaTTATGGTGAAGTCATA
ACTTTAAAGAATGCAGTGCATTGGGACCAGTGCGATGGACCAGGCTTCAT
GCCATGGTTTTTACGTGCTATCGGTAAATTCACCGGTGGTATCCCACAAG
ACCATGACTATCAACAAGGAATTATCTTACAACGCCAAATTATATTGGAT
TATTTTGGAAAGTATTTGAAACAGAAAACTTACCCGATGCCGTTGTTAAC
GGATGACTACCTACTTCCTGACAATTTCTTTCTGGGCATGCGCGTGTTCA
ACAACAAGGAGAAAACTGAAGAAGTAATTGAAGACGAAGAAACCATCCCA
TCTAAAGAACAAGTAGTGGAAACCGGTAAAGAGGAGATGATGAAGAAAGA
GGAGTTATGATTGGGTTAGATGTAAGAGAGAGGGGTTGATGGAAACCAGG
TTGAAATACTGTACAGTGCCTGGTGGAAACCACCTTCTATGGTAAGCAAG
GTTACTTAGAACTTTTTCTCACTTTTGATTACTTCTCTGTTGAAATGTAC
CTATGGTGACTAAAATTTTCTGGATCGCTAGAGTTTTCTGGaatgtagat
tttttttttaattggctTTCGTGCTTTAAGTATCGCCATCCCGATAACCC
TTCTCCAAACCTCAAagaattggaaagatatttttgagagttgAAATCAT
TGATAAGGCAAGTTCTCTCCATTCTTTCACCCCGACATTCTCTTTGCCAC
ACTTATGGACTTGTAATTTTATATaatgaattttttatattcCAAGCATT
ATTTTGTATATAATAGAGAATTGCCAAATTGTATTAATTATTACAGTcat
atttttctatttattGATTCTTTTATGATAGTTAAGTTTTCTAAGGTTGC
TTCAAAATTTCTGTTCTTATGTTGGCACTTAATTGCTGAAGATTTTATAG
AGTTATTCATAGTTATGATAGTTGAAATTTTTAAGACGGGctgaaaattt
aatgatttgTAATTTTAATGTTCATATTATTGATTTTATTATAGCGCTAG
ACTATATATTATATGTACGCATAAAGTCCTAGAATATATTCAAATGATTT
TTCCTGGCTACTGATTTGCAATATTTGTAATCTATCTG
Run BLAST on NCBI

transcript from alignment at sc0001418:25029..35605-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036151 ID=TCONS_00036151|Name=TCONS_00036151|organism=Clytia hemisphaerica|type=transcript|length=10577bp|location=Sequence derived from alignment at sc0001418:25029..35605- (Clytia hemisphaerica)
AAGTGGTTATCTGGACTGGCAAGTTTTGCTCTGAGTAAGTCTGTTGTAAA
ATTCTCTCTTTTTAAATTCCATTCACAGCAAGTGTTTTGTTTCTATAAAC
TTCCTTTACAGCAGTTTTTCAGCTGCAGCATAGTCAGGTAGATAACATTA
ATGTCTACATTGAAATTATAGTCTAATTGGGCCCAATCATTCAACGATGC
AAAAACTTATCTAGATAATTTGACACATAGAGTCTTTTTTAGCAAATATA
ATTTAACCACCAATAGCTCTTCATATTTCCATCAATCACCATCATGAAGC
ATTGTAACTCACTGTTATCAAACCCCTATTTTGAAGAATGTTAAAAGTTC
TTTCGTCTTAAACGGATTTCCATCTCGGTGAAGCATATAATAAGGCTTTC
CATCTCAAAATTCTGCATAAATCACCAAAATTTCAAGAATATTGTGCTAA
GTTGCTGTGTAAAATTTATTTCCGTCTCAGACGAAAATCCTTTCTTTGAC
CACTGTTTGAAGGCAAACATTTTTTAACTCTCATACTTAAGGGTGATTCT
CAACTTAACTTTTGTTATTACAGGGGGAGCATTACAGCACAGCTTCATTG
ACGCACCACTCATACCTCAAAGCAAATACGACAAAACACTTGGACTTGAT
GATGAAACCAACAAGAAATTTCCTTTGGTTGTTTTTAGTCATGGTTTGAT
CGGGTTCCGTCATATTTATTCGACTTTTTGCAGTGATTTAGCTTCACATG
GTTATGTTGTGGCCTCCGTTGAACACAGGTTCGTACACGCTTTTTATAAG
AACATCCAACATTTTTGAAGGCTCTTGATGTTCTTAACTTTTCGAGTTTT
AACCCTTAAATTGTTTTTTGAACATGTTCTTAATTTCACTGTGAGTACTT
TGGTTCAATTTCCTAAGAGATTGGGTGTTTTAGAGTTCGTGAAGCTTTAA
AATATTCTTAATTTGATCTTATGTTCTTATATAGTTTGTTTTATATAAAA
AACGTGTGCATTAGTTGCATTTTGGAAAACTGAAGCTTTTAGTTTGGAAA
TATAAATTAAATACAGTAAAACCTCTAATTAACGGACACTCTAAAAGGCG
GACACCTCTGATTAGCGGACAATTTCATTTTCCCCAGCCGTTTCCTAGTC
AAATCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCCTCTGAT
TAGCGGACAAATTTTTTCGCACGAAATAGCCAAAACCCCTATTTTAGCTC
TCCAATTAGCGGACATTGAATATCAAACGGGTCACAGACGTCGAAAATTG
AAAAAAAAATTAACTTTTCGAGTTTTAAACCTTAAATTGTTCTGAACATG
TTCTTATTTCACTGTGAGTACTTTGGTTCAATTTTCTAAGAGATTGTAAA
TTGTCTATATGCATTAGTTGTATTTCGGAAAACTGAGGCTTTTAGTTCGG
AAGTATGAATACCCCTTTCATTTTTTTCGATAAAAGGTTTCGATTATCAT
ATTCATTTTAGACATGAACTGATTTAGTTTTCACCATCGCATATTACGGT
GCATTAAGAAATTTGCTGACTAATCATTATAACTTGATCGTTAATTATAA
ATTGATTACAACTTTATATTAATCAGCAAATCACAACAGACAACAATTTC
AAATCTGTTTTCTGTAACTTTCACTTCGACGACTTGATTTTGTGACCATA
AATTGTAGTTTATGTCGTTTTATGGCATCGCATCGTCCCGGTGTACGTAG
TTTTCGGTGCCGACAGTAGGTGCCAAAATTGCAAGAAAAAGGAGAAGTTT
TGTTCTGAGAAAATAGTGGGACGAAACTATTTCAATCTGCTTTGCTTTGT
TATGTCTTCTTTTACAACGTTTCGAATTTTGGCGGTCACAAGTTGTTGTG
GAACCTGCTCTTCAAACGAGTATGGTTTATCCATTTTTTAACATATAAAA
TTCTTTATTGAAGCTTTTTGTCTGTAGATGGTAAATCCGTACAGTTCAGA
GACAAAATACAGTTGAAAAAATCGAGTTAGAGAGCTTCAACTGTAAATCA
TTTCGGTCTTGTCTTGAAGTTTTTTGGTCTCAAATGAGCATCTAATCCCA
ATATTTCAATCCTGTAAAATGATTATTTTTCTCATTCAGAGACGGCTCAG
CCCTACCTACATACTTCATGGACCCTGAGACAAACAAAGCAACTTCTTTA
CCTTATATGGACCATCCGACAACTGAAAACGCTGATGAAGAAATTATCCA
AATGAGAAATAAACAGGTATGATGAATGGTCTATCTTATGAGGTGATTTC
AAGTTTTATTCGCCGCGGTTTATGAAAAAAATACTGGTGATTTTGGTGAT
TTACACGTTTTTTTATAAGAACAAACTACATAAAAACTTAAGGCTTCGAT
GGCCAAAATGTTAAGAACAAGTCAAGAACATTTTAAGGCTTTGTGGACTC
TAAAACACCCGATTTTTTAGGAAATTGCACAAAAATACTCACAAAATGGT
GAAAATAAGAACATGTTCAGAACATTTTTAGGCTTAAATTTCAAAAAGTT
AAGAACATCCGAAGGCTTCAAAATTTTTGGATGGTCTTATAAAAAAGCGT
GTACATTTGTAAGTGTTATAATGAGAGAGCCGGGGTAACGATCAAATCAA
TTATTTACAGGAATGACCTAGAAGTCCAGGACTTGAGAGTCTTTCGTTTA
ATGTTTTCACTGGGTCCACCCTTGGTTTGTTCCGCTGACGCCTTAGACCA
TTCGGTCGTCACACCTTCTGGTGCGAAGAAATTAACAGAAATGATCGACT
GATAAAAGATACATAATTCATGATATGCACCATTGCAATGTCTTCCACGG
ACCCGACAACTGATTGGTTAAAAGTGACGTATTGACTGATTTTACGTCAC
TTACAACCAATTAACTATTGGGTTCATGATGTAATGTCAGAAGACATTGC
AATGGTGCATAACATGAATTCCAACCAAATATTTTTCAGGTCAACAGACG
AGCTGAGGAAGTCAGTAAGCTGCTAGACTTGTTACACGTTGTAAATAAAG
AGCCAGAAATTATTGAAAACCTTTTTCCATCAACGTTTGATCTGAAAACA
TTAAAGGTTTGTTTTTCCATATTTATAATATTTTATAATATCAAATTCGT
TATATTTATTTCAATTGGCATTTTTTAAAGCAGCTTTAAATATTCTTAAC
GAAACAGGATATGACCAGGCAGAAGAAAAGTAAAGAAAAATAATTCGGCA
TCAAATTATTTCGATTTCAATATGATATATATTTTTTAATATTTCTTAAA
AGAAATCTAAAATGATATATATTTTTAAAAATCATTCGACTATGTCTTGC
TATTGACTTATTATATTTTTAAAAACATATAAGAAGGTTCTGATTGAGAA
AACATATGCACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTTTTTAATTTCCCCCCCCCCCCCCCC
AAATAAGTGGGGGGCGGAGTCATGCATTTCATATATTTTTGAAGTCCATA
AAATTTGGAAGTTGGTTTAGTATTTTTTAAATATCTCAAATTCTGTTAAA
AAACCCTTGTTATCAAGTTGTGTTAGGCTACGTCATATCTTCCTTCGTTT
CGAGCGTAAAACTCCTACTCTTCGAGTAAGGCCTAAAAGCCTGGAGCTGT
CTATTGTGTAGACTAAAGTTGTATTGGCTTAATAATGAATCCAAGGTCGT
ATTCTTTTCCACGATATGTCATCGGAAATGGTCTAACTCACTAAAGATTA
ATTCAATGTGTTCAGTAAACAAATATTTTAGTGAGTTAAACCACAACGTT
CATGTTCTCATTGAAAACAGAATGCAATGGTTAAACTCACTAAAGATTAA
TTCAATGTGTTCAGAAAACAAATATTTTAGTGGGTTAAACCACAACGTTC
ATGTTGTCATTGAAAACAGAATGCAATGGTTAAACTCACTAAAGATTAAT
TCAATGTGTTCAGAAAACAAATATTTTAGTGGGTTAAACCACAACGTTCA
TGTTGTCATTGAAAACAGAATGCAATGGTTAAACTCACTAAAGATTAATT
CAATGTGTTCAGAAAACAAATATTTTAGTGGGTTAAACCACAACGTTCAT
GTTCTCATTGAAAACAGAATGCAATGGTTAAACTCACTAAAGATTAATTC
AATGTGTTCAGTAAACAAATATTTGGTGAGTTAAACCACAATGTTCATGT
TCTCATCGAAATACAGTAGAGTCTCTTCAACTCGCGAACCTCTTTAACTC
GAATGTCTCCTTAACTCGAACAATTTTTCTCGTCTCTTCAATTGACAATG
CCTTTTAAACCTTTCTCCATAACTTGAAATTTCCTTAACTCGAACAAATT
CGCGTTCCCCGTGCGGGTTCGAGTTATGGAGACTCTGCTGTATTCAAATC
CATGAGTTGAAACTCACATCACTTTCTGTGGCAAAGAATAAAAGTTGTTT
CTATGTTATGTCTTTTTCCAGGATCATTTTCTTTCTCTTCAGAGTCGTAT
AAATAAAACAACACATTTTCTTACTTTTCTAGGGCCGTTTGGACGTTGAG
GAACCATTGATCATTGGTCATTCTTTCGGTGGTGCAACAACGTTGAACTC
TATCAATAAAGATGATCGCTTCAAGTACTTATCTTATTTTCGATTCTGAT
TAATTATAAACGCATTTCCTTGAAAACATGTTAAAAAAAGCATTACTTGA
CACGGCAACCCAAGATTTTTAAAGGGCATTTAGGTCAATATTGTGAAAGG
GGGCTGAATTCAGGAAATATAACGATGTTACCTGTTCTTCGGTGGGTACC
TAGCTGTCTGGTTGGGGCTGTGGGTATATGTTGAAAGTTTCTCCGAGTTT
CCCTTTTTTTTTCTCGAGTGAATTAGGGTACCCAAAATTCAATTCAAACC
CAAATCAAATTCTTTTAGAGATTCCTTAATCATCGGGCAACCGTATTTCA
TTTGGAACACTTAACATTCTAACACTTAGGAAACTAGTAAATGTTTAACA
ATTTCAACAAACTTTCCTTTTTTTTCTTTTTTACCCCTGACCTCATTTTC
TATTACAATAGACTAAAGGAGATTGGTCTCGAGCTGATCAGAGTTGAATG
ACATCATATGCCTGAAAACTTTGCATTGACTCACTCACAGATACCGATTT
CTGACGTCATTCGACCTTTGTAAACTCGAACCCAATTCCCTTGAAACGTT
AATCCTTGAATATTATACCTATTGAATGTTATACCTATTACAGATGGTTT
CTTTGCCATGAATTTGATAGGTTTTAAAGGGACATAAAAGTAGTAAAATG
TGAATGTTGTGCGAACCACGTGTCATGAAAGAAAACAATTAAAATTACTT
GTCCAAAACAATTGAAACAATCAAAATCAGCCATATTTGTTTTTATTTTT
CATTTAGACATGTGACATTTGTTTTGATTTTGTATCTCCCGCTGCATACG
GTATTTTTACAAATTCCGTCAGTACTTTTATGTCCCTTTAAAAGATTTCA
ACATTTCTATTTGTCAAAGCAGATGTTGAAATCTTTTAAAGGGAAATCAA
TAGACATTTCAACAAACTTTCCATCTAGGTGTGCCATAGTGTTGGATCCT
TGGTTTTTACCACTGACAGAAGATGAATTTTACGAAAGTGGTCTCAAGAA
ACCAACATTCACTATCTTCACTGAGAGATTCAACTGGAATAAGAACATCC
AACGATGTCAAAGGTTTCTGGATGGGCTACCTAAAGGTTAGACTAGACTC
GTTTATAATGGGCTATTCCAGAATAAATTTGTATCTCGTTTGTATCTAAA
TGTTGAGGAGGTCTTTTTTTGGGAAAGGTGACCACTCCCTGGATTTTTTT
TCTCTCTCTTTGGGCCAGCCAAAAACTAACCCCCCGCCTAGATGTTTTAT
TTTCCTGACCACCTTGGACGTCGCACCTCCTCAACATAAGTGGTACTGAC
TTTTTATGCAATAGCCCAATCTGTATAGGTACCGGGTGCGCCACAAAAAA
GTTTCTCTCTTTAAAAGTAATTTTCTCGAAATCTAAAAATTTTAAAAGAA
CCATTCCTATTTTATTGGAAAGAAGAAANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTTTGTTTCAGTCATTAAAAATGATAATTAGCTGTTTAAATGACCTTTT
GTTATTTAAAGGAAGGTTGAATTTCAATGAAAGGAAGAAAATCCGTCGAA
AAAGGCCAAAAGATCTGGTAGAATTCATAAAAATACATCAAATATGGGTT
TCGAGGTAGATTCAGCCGTACATAGACTTTATCCAGTCTAGAACCAAAAA
TCTGAGGAAAATTTCGGTAAAACTAAATCAAATTAATTTTGATGAAGATT
TTGAACCCTTTCGACGCTTCAGTTTCAAAATTTATGTGTTTAGTTAATGA
AAAATGTTCTTAATCATGTAAAGGCTATTGCGATTGCCAAATTTAAAGTA
AAAATTTGATAGGTCGATTTTTAACGTTTTCGAGCACTTTCTGAAAGTAA
CATTTTTATTCAATTGGACATAACTTTTGATCTAATGAATCGAATTTAAT
AAATGACCCATCTAAATTTAAGTCTATCTTTCTTCTTTCCAATGAAATAA
GAATGTTTCTTTTAACATTTTTAGATTCCGAGAAAATTAGTTTCAAAGAG
AGAAACTTTTTTGTGGCGCACCCGGTATAATACAGTAATGGGTGTTATAT
GATAATACGATAATTATTACAGGATAACATCAGTTTGTATATAAGGATGA
AATATTATAACATAGTTTGACTACACTTGTCTCTTCCTATTTTTGTTGTT
TATTTTCTACTCAGTCTGAACTAGTCGGCTATATTGCTGACTACCTAAAG
GTTCTTTTGATCGTACCATTATATGTTACTAATATAACTGAGCTCTACCA
ACAAAATATTTCTACCACTTTTACACTTTTAAATTTTGGGCACGCAACCT
TTGCAACAACCTGTAATAATTCTTTTCTTTTTCATTTTATAGATTATGGT
GAAGTCATAACTTTAAAGTGAGTCATTAGCAATTCTTCCAACGCCCTCGT
TTCACGTTTCTGCTTTGATTGCACAGCATTTTTAACACCCTTTTGCCACC
CTCACGCCCCGCCAACACCAATTTGGAGAACTCTTATTGTCAATTCTGCT
TTGAGAGGCAAGTCTGCACTCTATGTCACCCAAGACAATGTCTTCGAATG
CAATGTACATATTCAGGGCCCACGCCATGAAATAGAAAGTGGGGGACCAT
GAATATAGAGTCTAAGGAAAAAAAGAAGGGGGGGGCATGGCCCCTGGCCC
CCCGGTGGCGTGGGCCCTGATATTGGCTCATCATGCTTTTAATATTTGAA
ATTCAATCATTTAGAAGACAATTTCGCCTAGAAAAATTATTAAATTTTAC
ACCCTTTTACCCCAGGAATGCAGTGCATTGGGACCAGTGCGATGGACCAG
GCTTCATGCCATGGTTTTTACGTGCTATCGGTAAATTCACCGGTGGTATC
CCACAAGACCATGACTATCAACAAGGAATTATCTTACAACGCCAAATTAT
ATTGGATTATTTTGGAAAGTATTTGAAACAGAAAAGTAAGAATTGAGTTT
ATTTTGAGTTAACTCGATTACTGATATAGAAATGAAATTACAATTTTATT
TTCGTTATTTATCAATATCAAATTTACATAACCAGGACACTGGTGTAAGG
TGCCTAAGTATTTGCCTAATATTTGTCGAACCCCAACTAAACGCTACTTC
AAAATTCAAATTTTTACTTCAAATAAACGCTCCGGTCGTTTATTACATTC
TTTGAATTTATTCGAAGTCATACGGTACATCAAAATACAGTAAAACCTCC
AATTAACGGACACTCTAAAAGGCGGACACCTCTGATTAGCGGACAATTTC
ATTTTCCCCGGCCGTTTCCTAGTCAAATCATCATAAAAAAGTTTCTAAAA
GGCGGACACTCAATTAGCGGACCCTCTGATTAGCGGACAATTTTTTGCGC
ATGAATTGGCCAAAACCCCTATTTTAGCTCTCCAATTAGCGGACATTGAA
TATCAAACGGGTCACAGACGTCCAAAATTGAAAAAAAAATGTTTAGATAT
TTTTATTTCGAGCACTTATTAGTCTTATTATTCAAATTATTTCTACAAAT
TTTCAGTTTTCCCTTGACCCATTTAACGAATTTAGGTGGGCCAAAGAAAT
CATAAATCACTGGTACTTCAAGTCCGTACTCACCACCTCGATTTAACCTC
TTGCCAGTCACTCGAGCTCTTCTATGGCCTAGTGTCTGCAGATAATACTT
TAGACCCCAATTTTGTATTTTCGACACCCTGGGATGGCCTAATTTAAAAA
TTGGAGCTCCGAGATCAAAAGTTTCTAAAAGGCGGACACTTCTAATTAGC
GGACACTAACCCCTTTCCCCGATGGTGTCCGCTAATTAGAGGTTCCACTG
TACACACTTTTGAGAAGTCCCGTTTTCTTTAATTCTTAACCCTTTAATTG
CCGGTCGCCGGATTCTTTTTTAAAAGTTCTGCCTCTTAGCCTCGCGAAAA
ATGAAGCGTCAACATATTTGCTACATGCCGGCATATGCGGATATGAGTGA
CAGCACATTTAGCTTGATTGTCAGAAAATTATCAGAAATATAAGTGATAT
GTGTTCACTTGAGTGAAAATGAAGTAAAATCTCTCAATAAATGGGTATGC
CGACATGCGCATGGAAGGGATTTTCAAAACTTTTCACTCGACTTCATTCT
CTATTTCTTCACCACAGCTTACCCGATGCCGTTGTTAACGGATGACTACC
TACTTCCTGACAATTTCTTTCTGGGCATGCGCGTGTTCAACAACAAGGAG
AAAACTGAAGAAGTAATTGAAGACGAAGAAACCATCCCATCTAAAGAACA
AGTAGTGGAAACCGGTAAAGAGGAGATGATGAAGAAAGAGGAGTTATGAT
TGGGTTAGATGTAAGAGAGAGGGGTTGATGGAAACCAGGTTGAAATACTG
TACAGTGCCTGGTGGAAACCACCTTCTATGGTAAGCAAGGTTACTTAGAA
CTTTTTCTCACTTTTGATTACTTCTCTGTTGAAATGTACCTATGGTGACT
AAAATTTTCTGGATCGCTAGAGTTTTCTGGAATGTAGATTTTTTTTTTAA
TTGGCTTTCGTGCTTTAAGTATCGCCATCCCGATAACCCTTCTCCAAACC
TCAAAGAATTGGAAAGATATTTTTGAGAGTTGAAATCATTGATAAGGCAA
GTTCTCTCCATTCTTTCACCCCGACATTCTCTTTGCCACACTTATGGACT
TGTAATTTTATATAATGAATTTTTTATATTCCAAGCATTATTTTGTATAT
AATAGAGAATTGCCAAATTGTATTAATTATTACAGTCATATTTTTCTATT
TATTGATTCTTTTATGATAGTTAAGTTTTCTAAGGTTGCTTCAAAATTTC
TGTTCTTATGTTGGCACTTAATTGCTGAAGATTTTATAGAGTTATTCATA
GTTATGATAGTTGAAATTTTTAAGACGGGCTGAAAATTTAATGATTTGTA
ATTTTAATGTTCATATTATTGATTTTATTATAGCGCTAGACTATATATTA
TATGTACGCATAAAGTCCTAGAATATATTCAAATGATTTTTCCTGGCTAC
TGATTTGCAATATTTGTAATCTATCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021259XLOC_021259Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036151-exon-sc0001418-1575043694:35572..35605TCONS_00036151-exon-sc0001418-1575043694:35572..35605Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1575043694:34828..35032TCONS_00036151-exon-sc0001418-1575043694:34828..35032Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1575043694:33190..33316TCONS_00036151-exon-sc0001418-1575043694:33190..33316Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1575043694:32350..32466TCONS_00036151-exon-sc0001418-1575043694:32350..32466Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1575043694:30332..30423TCONS_00036151-exon-sc0001418-1575043694:30332..30423Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1575043694:29220..29377TCONS_00036151-exon-sc0001418-1575043694:29220..29377Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1575043694:27689..27713TCONS_00036151-exon-sc0001418-1575043694:27689..27713Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1575043694:27121..27290TCONS_00036151-exon-sc0001418-1575043694:27121..27290Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1575043694:25029..25938TCONS_00036151-exon-sc0001418-1575043694:25029..25938Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1510915933:35572..35605TCONS_00036151-exon-sc0001418-1510915933:35572..35605Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1510915933:34828..35032TCONS_00036151-exon-sc0001418-1510915933:34828..35032Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1510915933:33190..33316TCONS_00036151-exon-sc0001418-1510915933:33190..33316Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1510915933:32350..32466TCONS_00036151-exon-sc0001418-1510915933:32350..32466Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1510915933:30332..30423TCONS_00036151-exon-sc0001418-1510915933:30332..30423Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1510915933:29220..29377TCONS_00036151-exon-sc0001418-1510915933:29220..29377Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1510915933:27689..27713TCONS_00036151-exon-sc0001418-1510915933:27689..27713Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1510915933:27121..27290TCONS_00036151-exon-sc0001418-1510915933:27121..27290Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1510915933:25029..25938TCONS_00036151-exon-sc0001418-1510915933:25029..25938Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1491911889:35572..35605TCONS_00036151-exon-sc0001418-1491911889:35572..35605Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1491911889:34828..35032TCONS_00036151-exon-sc0001418-1491911889:34828..35032Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1491911889:33190..33316TCONS_00036151-exon-sc0001418-1491911889:33190..33316Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1491911889:32350..32466TCONS_00036151-exon-sc0001418-1491911889:32350..32466Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1491911889:30332..30423TCONS_00036151-exon-sc0001418-1491911889:30332..30423Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1491911889:29220..29377TCONS_00036151-exon-sc0001418-1491911889:29220..29377Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1491911889:27689..27713TCONS_00036151-exon-sc0001418-1491911889:27689..27713Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1491911889:27121..27290TCONS_00036151-exon-sc0001418-1491911889:27121..27290Clytia hemisphaericaexon
TCONS_00036151-exon-sc0001418-1491911889:25029..25938TCONS_00036151-exon-sc0001418-1491911889:25029..25938Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001418supercontigsc0001418:25029..35605 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	1.66836e-09	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.000918703	6.00496e-06	0	0
Blast
[Close]
BLAST of TCONS_00036151 vs. Swiss-Prot (Human)
Match: PAFA (Platelet-activating factor acetylhydrolase OS=Homo sapiens GN=PLA2G7 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 8.130e-41
Identity = 94/239 (39.33%), Postives = 139/239 (58.16%), Query Frame = 1 
Query:  124 KKFPLVVFSHGLIGFRHIYSTFCSDLASHGYVVASVEHRDGSALPTYFMDPETNKATSLPYMDHPTTENADEEIIQMRNKQVNRRAEEVSKLLDL-LHVVNKEPEIIENLFPSTFDLKTLKGRLDVEEPLIIGHSFGGATTLNSINKDDRFKCAIVLDPWFLPLTEDEFYESGLKKPTFTIFTERFNWNKNIQRCQRFLDGLPKDYGEVITLKNAVHWDQCDGPGFMPWFLRAIGKFTG 837
            +K+PLVVFSHGL  FR +YS    DLASHG++VA+VEHRD SA  TY+   ++          +  T   +EE   +RN+QV +RA+E S+ L L L + + +P  ++N     FD++ LK  +D E+  +IGHSFGGAT + ++++D RF+C I LD W  PL  DE Y S + +P F I +E F +  NI + ++     P    ++IT++ +VH +  D       F  A GK  G
Sbjct:  142 EKYPLVVFSHGLGAFRTLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKSWLYLRTLKQEEE-THIRNEQVRQRAKECSQALSLILDIDHGKP--VKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQTLSEDQRFRCGIALDAWMFPLG-DEVY-SRIPQPLFFINSEYFQYPANIIKMKKCYS--PDKERKMITIRGSVHQNFAD-------FTFATGKIIG 366
The following BLAST results are available for this feature:
BLAST of TCONS_00036151 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAFA8.130e-4139.33Platelet-activating factor acetylhydrolase OS=Homo... [more]
back to top