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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036149 ID=TCONS_00036149|Name=TCONS_00036149|organism=Clytia hemisphaerica|type=transcript|length=769bp
GCACTCtttcgcatgtttccgacatacttgctctattgtcttaaatccgc
cagtgtTTATGTATAGATTTCTATATTATGTTTTAGATGTGGCGTGTTGC
TTGATCTATGGACAGTTCCCCTGGGACCTGACTTGTACTGCAAGATGAGA
AACGAACGTCCCTTATTGGTCATAATGACTGAATGTTGGAAGTGGAAGAA
GAATTGTGATCGTTTGAAAATGTATGCGAACCATCAGAAAGAAGgaTCCA
TTGAAACTGTCACGTTAAAGAACGCTGGTCATATAGACCAAACAGATGCC
ACGCCCATCATCCCGCGTACCTTATCCTGGGTCTTTGGAAAGGACCTGGG
TCCAATAGACTTCGAGCATGGTATAAATGTGCAACGAAAGCTCATTATGG
AATATTGTACCAAGTTTCTTGTGATGTCTGTATCTGGTAATAGCAATTTA
TCATCAGTGAACTTTCTTAGTGATGAATATGATCTCCACAAAGATTTCAG
TATAGGTTATTCAATGTGATGAAGGGTAAGTTGATAAATAAAGTTGACCC
AGAAAATCGGAAATGCTCAGGGTTTAGGCCTCTCTTAAAGCGTCTGCTTA
AATTCATGGTGTCAGGAGCGAGAAATATTGTCCATCCGAAGGTAGGGGAA
GGCACCACTCATCGCTGTTCGTTTTTTAGGGTAATAGCTCACcacgctga
atctaaaaatagattttatttttgacataatcattactctcgatgtgttt
ttacgagttccaatcccat Run BLAST on NCBI transcript from alignment at sc0001418:9945..13735- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036149 ID=TCONS_00036149|Name=TCONS_00036149|organism=Clytia hemisphaerica|type=transcript|length=3791bp|location=Sequence derived from alignment at sc0001418:9945..13735- (Clytia hemisphaerica)
GCACTCTTTCGCATGTTTCCGACATACTTGCTCTATTGTCTTAAATCCGC
CAGTGTTTATGTATAGATTTCTATATTATGTTTTAGATGTGGCGTGTTGC
TTGATCTATGGACAGTTCCCCTGGGACCTGACTTGTACTGCAAGATGAGA
AACGAACGTCCCTTATTGGTCATAATGACTGAATGTTGGAAGTGGAAGAA
GAATTGTGATCGTTTGAAAATGTATGCGAACCATCAGAAAGAAGGTGAGT
GGTGTAGCCCACTAATAGTGGTGTAGCCCAGCGTAATAGGCTCTTGATCG
GAGAGCCAACATTTCATTTCCTTACAATTAGGTTACATTAGCCTCCCTTT
CATGTTTAAGTTTTGCTCATTCGAGCTATGTTAAGCTTAGGGTTAAAACT
TAGTATCCCATTTTACATTAAAACGCAATTTTCGATATTCCTCAAACTCA
AATCAAACTCATTTCAGGTTTGAGCGCTTGTTCTAGACATGTTTTGAAGG
TTGCGGTGTAAATTCAACTAATGATTATATTTATTTTTTTAGGATCCATT
GAAACTGTCACGTTAAAGTAAGTATACTGTGCATTTGGATGTGTAAAATA
CTGTGCAAATACTTACTTATAGGAGTTGTAAGTTGACAAATTAACGGGAA
AAATCATTTCTGGTTTTGTGGTACTCTGTGTATACGTGGCTTAGTAACAG
CCGTTTTACGGCAATTAATTTTAAAATTTAACTAGCATCTACAAGACTTC
TCTGTACACAAACCCGAGATCTACGGCTAATTTCAAAATTCATTGTCGTA
GAGAGTCTGTTGTCATTGTCTTTTCTTATTTGAGATTTTTCAAACCAACC
GCTGCGATGGAGTGTTGACGAGAGAGGGGAGGCGATGAGAGAAGCGTGCT
ATTTATAAATCATACTTCATCGCAGAGGTTTCCGTACGGGAATTAGACAA
TGCGTACAGAGTGTACTACGAAACGATAAACGTGGTACAGAGTAAGTACT
ACAAGACAAGTTTGGTAGTCGTCAAATAAAATTCAGTGGACTCTCCACCC
GGGGGGGGGGGCAGCTGGGCAAAAGGGCCGACGGGTATGTGCGGGTCCTA
CGGGTACCTTTTCCAATATGTTTAAAATGCACTGTAAGGGTCGGAAAAAC
TAGAGATGCACTGTAAGGGTAGAAATTTCAGAAAATTCTTGAAAATCTAG
ATATTTTGACCAAAAATGCTAGAATTTTGACCATTTTTTGCACGAAAGGG
ATCGAAAATTTGGGGGAAAATGCACTCTAAGGGCATGATTTTCACTGATT
TTTGCTGCACTGTAAGGGTGCAATTTTAAAAGCCAATTTTTGGCCCGCAC
ATACCGTCAGTCCGCAAACCCAGTGCGGGACTCTCCATAACTCGAACACG
CAAAGGGGAACGCACATTTGTTTGAGTTATGGAAATTTCGAGTGTTGGAG
TAACGTTTACAAGGCATTGTACTGAAGAGACCATAAAACTTGTTCGAGTT
AAGGAGACATTTGAGTTATAGAGGTTCGAGTTAAAGTGTGGCGAGGAAGT
ACTCAACAAATTGTCTGGTATGTTTGGAACATCTTTATGACGTAGAAGTT
CAAACTAAATAAATAAAATAAATCTCTCATTACAAATCTAGTTTGAATAT
AGAATTGAATAGTTGAAGTTGACTCATAAATTAAGGCTTAACTTAGTAGT
GCAAAGACAGAGGCCCAACAAAGGAAAAACAAGATGGCTGCCATGAATGA
GAATGAATGAAAGCAAACACTGAAAAAGGCCACACCTACAAAAACAAAAT
GGCTGCCATGAAAGAAAAACAAGGAAAGCAAAACCTACCGGCTTGCCAGA
TATAAAATGCTGTGACTGGCAGCAATAAGTCAAGTGAATGTATGATTGAT
CCACAAGACCATGAAAAATATATATATTGAGTTGAGTTAGAGAGCTCCTT
CCTCTGTGGTGACTTGATGTTAACTGAAGAAAAGTGTGAGTGTGCACTAT
TTAAGGCCACATTAAGGAGATAATAAAAACTAAGGAGATAAAATAACTAA
TCATATATGATAAGATTATCTCTATAATAATAGAAAATGTAAACAAATGA
ACTGTTCTACAAATTGACATCATGGAGATAATATGATATTGAAACAAAAT
TGTAATTTCTCATAATATTGAATAAAATTAGGGCAATGCCCGCTACATAA
AGAGACTCCATTGTGTTTTATACTTCCCAGTCTCTAGCGTCTCCCCTGTA
AATATTTAACAAAATCACATTCTATTGTTACCATATATGTGAGAAGTTAA
ATGTATCTTCAAAAAGTGCTCTACCGAAGGAGCATAATATCAAAACAAGA
AAAATAACCAAACTTGCTTTTTACAATACTTTAAGTTTCATGTTTCCAAT
CGTCAGTTGTAAACTAAATGTTGAACAAATTCTCTTCCTATTCATACATC
GTACAATAATTAGAGTAATTAACAAGGGAATCAATACGTGTCGTAAAATT
TAAAAAAGAAATTCTATTTGAAAATAAAAAGTTAATCTTTTGATTTATAA
TTTGCCAATATTGTTATAATAGGAACGCTGGTCATATAGACCAAACAGAT
GCCACGCCCATCATCCCGCGTACCTTATCCTGGGTCTTTGGAAAGGACCT
GGGTCCAATAGACTTCGAGCATGGTATAAATGTGCAACGAAAGCTCATTA
TGGAATATTGTACCAAGTTTCTTGTGATGTCTGTATCTGGTAATAGCAGT
AAGTTATATAGTACAAAATGGTTTTGAGCATTTTTAGGTTTAAATTCCAA
ATGATAATTTTCTTAGTGTACTTTAGGCGTACAAACTTTCGCGAGCAGAA
ACTTTCGCGATTTTCGCGAATCTTCAGGAATTTTATTCTCAAACAAATCG
AAATCTAACATATTATTATCCCTTAATGCCTTTTTAAAGTCGAAGAGCAA
CCGTCTTTCTTTATCGGATTTAAGGAATATTTTTGCACCTTTAAGGTAAT
TTTATTCGAAAATTCTCATTTTTTTCCAACGATTCGCGAAAGTTTATGCT
CGCGAAAAACATTTTTTCCTCAAATTCGCGAAAGTAAATGTCGTAAATTT
CGCGATTTTTCGACCTCGGGAAAGTTTCTGCCCGCGAAAGTTTGTACGCC
TAAAGTATTCTTAACTTTTTGACCAATAGCGTACCGCTCTGAATTTAAAA
ATAGTAACAAATTTGCACAAATTTATTCGTTTGTGATCCCATCCTCCTTT
GCGTTAATTACTCTTGCACGTTAATTACTTACAATATCAAAAGAAAGGTA
AAGACTTTCACGGTTTTCCAAACATTTCGAAATGGACTGTGGAATTGGAA
CTCGTTCACATTTCTAGCTGCAAAAAATTATGACATGCATGACATGGAGC
CTATTTAATCATGAATATTCTTATACAGTACATTCTTATAAAAAAACTTT
TTTTTTTCCCCTTTTAGATTTATCATCAGTGAACTTTCTTAGTGATGAAT
ATGATCTCCACAAAGATTTCAGTATAGGTTATTCAATGTGATGAAGGGTA
AGTTGATAAATAAAGTTGACCCAGAAAATCGGAAATGCTCAGGGTTTAGG
CCTCTCTTAAAGCGTCTGCTTAAATTCATGGTGTCAGGAGCGAGAAATAT
TGTCCATCCGAAGGTAGGGGAAGGCACCACTCATCGCTGTTCGTTTTTTA
GGGTAATAGCTCACCACGCTGAATCTAAAAATAGATTTTATTTTTGACAT
AATCATTACTCTCGATGTGTTTTTACGAGTTCCAATCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036149-exon-sc0001418-1575043694:13492..13735 | TCONS_00036149-exon-sc0001418-1575043694:13492..13735 | Clytia hemisphaerica | exon |
| TCONS_00036149-exon-sc0001418-1575043694:13169..13193 | TCONS_00036149-exon-sc0001418-1575043694:13169..13193 | Clytia hemisphaerica | exon |
| TCONS_00036149-exon-sc0001418-1575043694:10988..11163 | TCONS_00036149-exon-sc0001418-1575043694:10988..11163 | Clytia hemisphaerica | exon |
| TCONS_00036149-exon-sc0001418-1575043694:9945..10268 | TCONS_00036149-exon-sc0001418-1575043694:9945..10268 | Clytia hemisphaerica | exon |
| TCONS_00036149-exon-sc0001418-1510915933:13492..13735 | TCONS_00036149-exon-sc0001418-1510915933:13492..13735 | Clytia hemisphaerica | exon |
| TCONS_00036149-exon-sc0001418-1510915933:13169..13193 | TCONS_00036149-exon-sc0001418-1510915933:13169..13193 | Clytia hemisphaerica | exon |
| TCONS_00036149-exon-sc0001418-1510915933:10988..11163 | TCONS_00036149-exon-sc0001418-1510915933:10988..11163 | Clytia hemisphaerica | exon |
| TCONS_00036149-exon-sc0001418-1510915933:9945..10268 | TCONS_00036149-exon-sc0001418-1510915933:9945..10268 | Clytia hemisphaerica | exon |
| TCONS_00036149-exon-sc0001418-1491911889:13492..13735 | TCONS_00036149-exon-sc0001418-1491911889:13492..13735 | Clytia hemisphaerica | exon |
| TCONS_00036149-exon-sc0001418-1491911889:13169..13193 | TCONS_00036149-exon-sc0001418-1491911889:13169..13193 | Clytia hemisphaerica | exon |
| TCONS_00036149-exon-sc0001418-1491911889:10988..11163 | TCONS_00036149-exon-sc0001418-1491911889:10988..11163 | Clytia hemisphaerica | exon |
| TCONS_00036149-exon-sc0001418-1491911889:9945..10268 | TCONS_00036149-exon-sc0001418-1491911889:9945..10268 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001418 | supercontig | sc0001418:9945..13735 - |
Blast
The following BLAST results are available for this feature:
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