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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036147 ID=TCONS_00036147|Name=TCONS_00036147|organism=Clytia hemisphaerica|type=transcript|length=757bp
atttaacAACGATTTGAGAAGATGAGACGAATGAATGGAAACACAATAAA
TCGAACAAAAGGATGATTTTGaaaagaaccaatcagaaatcaTGTCTTTC
TTTTCAAACGCTTTCCAAAAGTTTTTCCGCAATTGGAAAATATGGTGCGC
ATGTGCGGTAGTCTTCTTCCTTCTGAATGTTATTTATCTTCTATCGCAAG
TCAATCGATCATCTAAAGCTTCGAGCAGCGCTATAAATGATCATGCGGCT
GACTCGATGTTAAAATCATTAGACAAAGAACGTGGCGTGGATGATTCGAT
CTCTCACACAACAAAAAATGATATGAGAACAAAAATAATGAGGCGAAAAA
ATGATGCAATAAGAAGCGCCGAATCTGTCAAAAATAGAATATCTTCAATG
AAACGGGGCGCCCATCCATCACATATTATACACAAACTAGTTCAAAACGG
TATTGGTTCAGAGGCCACTTTCACTTGTTTGAACGGTTTGAAGAAACTCA
CTTTGAGAGATTTCAATGATGATTTTTGTGATTGCGTGGATGGTTCAGAT
GAACCTGGTACTAATGCTTGCAATAATGGAAGGTTCTACTGTTCGgttga
agaaaaattcattcattcaactTATGTAAATGATGGGATATGTGATTGTT
GTAATGGTGAGGACGAGTGGATGAAAATGCAACCTTTGTATATTTTACCT
CGAAAGTTCCcttctaaaaagtttttcccCTGCCCCAATACGTGTGGGGG
ATAACTT Run BLAST on NCBI transcript from alignment at sc0001418:7097..9186- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036147 ID=TCONS_00036147|Name=TCONS_00036147|organism=Clytia hemisphaerica|type=transcript|length=2090bp|location=Sequence derived from alignment at sc0001418:7097..9186- (Clytia hemisphaerica)
ATTTAACAACGATTTGAGAAGATGAGACGAATGAATGGAAACACAATAAA
TCGAACAAAAGGATGATTTTGAAAAGAACCAATCAGAAATCATGTCTTTC
TTTTCAAACGCTTTCCAAAAGTTTTTCCGCAATTGGAAAATATGGTGCGC
ATGTGCGGTAGTCTTCTTCCTTCTGAATGTTATTTATCTTCTATCGCAAG
TCAATCGATCATCTAAAGCTTCGAGCAGCGCTATAAATGATCATGCGGCT
GACTCGATGTTAAAATCATTAGACAAAGAACGTGGCGTGGATGATTCGAT
CTCTCACACAACAAAAAATGATATGAGAACAAAAATAATGAGGCGAAAAA
ATGATGCAATAAGAAGCGCCGAATCTGTCAAAAATAGAATATCTTCAATG
AAACGGGGCGCCCATCCATCACATATTATACACAAACTAGTTCAAAACGG
TATTGGTTCAGAGGCCACTTTCACTTGTTTGAACGGTTTGAAGAAACTCA
CTTTGAGAGATTTCAATGATGATTTTTGTGATTGCGTGGATGGTTCAGAT
GAACCTGGTACTAATGCTTGCAATAATGGAAGGTAAGTTTTTCAATATTT
TTTTGTTCTAAGGTTACAATGGAGCGAGTCTCGATTACTCGAAAACTCGA
GCACGCACGGGGAACACAAACTTGCTCGAATTAAGAAGATTTCCAGTTAG
GGTAGGGTTTATAGTACATTGTTAACTGAATGGACTAGAAAACGTATTCG
AGTTAAGGAGATATTCGGTTTGTAGAGGTTCGAGTTATGGAGACTCCAAT
CTGACGTTTGAATTTAGCGTTTTAACAGTGACTTTAACCTTTATGATAAC
TCTTTTTGACTTCACCAAGCATCATTTTTCATCATTCATGATTCAACCTG
CGAATTGTCTTAAGATTATTGCAATAATGGAAGGTGGGTCCGTTTAGCAA
TTTCAAATTTATTACTTCTCTCTCATTTTGAAGATGCGAAAAGTCTCATA
GGAGTCTCATAGCTACCTCTGAGTTAACTTTAAGCAAACATGGTAATATG
AATACTGTGTTAATATTATTCCCTTTCTAAGAAGACTTGGTCGGGCTATT
CCAGAAAAAAAATTTTACCCCCACCCCCCATGTTGAGGAGGTCTTTTGAT
TTAGTTTTCAATTTCAGAATCCCCTTGGATTTTTTTTGGATTTTTGACTC
CGTTTTACTGACTTTTCACTACATTTAAACTGTATACCTTGGATTTTACA
CTCGAAAAACCAGACCAAACAGATTTTTTATTTTCAAGGACGACCCTGGA
CGTCACACCTACTCAACATAGGGTGTTCAGACTATTTCTGGAATAGCCCA
ATGACATTCAGAGAATTTTTCGTTTTGACATGTGACTTTTTTAACAATGA
CAATGACAATAACAATAACTTTTTTTTCACTATCTTTGATAACTCTTTTT
GACTTCACCATGCATTATTTTTCATCATTCATGATTCAACCTGCGAATTG
TCAAATTGCCTTATTTTTGTCCTAAATCCCCTGATTTTGTACATTTACCT
TGAATTCGGCGTATCCAGAAAGATTATTTCCGACCCCCCTGGTAATTATT
AGGACCCCCCTGGTAATTATTAGGAGCACCCTGGTAATTATTAGGACCAC
CCTTTATTTGGAAGCTTATCTTCCCCTTCCCGTTTTATTATAGGCCATTT
CACAGTCGCAAAGTGTAATGGGTAATCAGGACCACTGCGCACTAATGACG
ACTTACTATTGGTCCAAAGTTTTGATATTTGTTGAAGATTTTTGCGTCTA
ACCAACGGGGAGCAGTTATCAGGGCGCAATCAGTCCTAATTACCCATGAT
CCAGTTCGACTGGGAAATGGCCTATAGACACTTGAGATTAATTTGAAACT
GTGTATCTCTTCCAGGTTCTACTGTTCGGTTGAAGAAAAATTCATTCATT
CAACTTATGTAAATGATGGGATATGTGATTGTTGTAATGGTGAGGACGAG
TGGATGAAAATGCAACCTTTGTATATTTTACCTCGAAAGTTCCCTTCTAA
AAAGTTTTTCCCCTGCCCCAATACGTGTGGGGGATAACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036147-exon-sc0001418-1575043694:8605..9186 | TCONS_00036147-exon-sc0001418-1575043694:8605..9186 | Clytia hemisphaerica | exon |
| TCONS_00036147-exon-sc0001418-1575043694:7097..7271 | TCONS_00036147-exon-sc0001418-1575043694:7097..7271 | Clytia hemisphaerica | exon |
| TCONS_00036147-exon-sc0001418-1510915933:8605..9186 | TCONS_00036147-exon-sc0001418-1510915933:8605..9186 | Clytia hemisphaerica | exon |
| TCONS_00036147-exon-sc0001418-1510915933:7097..7271 | TCONS_00036147-exon-sc0001418-1510915933:7097..7271 | Clytia hemisphaerica | exon |
| TCONS_00036147-exon-sc0001418-1491911889:8605..9186 | TCONS_00036147-exon-sc0001418-1491911889:8605..9186 | Clytia hemisphaerica | exon |
| TCONS_00036147-exon-sc0001418-1491911889:7097..7271 | TCONS_00036147-exon-sc0001418-1491911889:7097..7271 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001418 | supercontig | sc0001418:7097..9186 - |
Blast
BLAST of TCONS_00036147 vs. Swiss-Prot (Human)
Match: GLU2B (Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 1.434e-19 Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 2
Query: 470 FTCLNGLKKLTLRDFNDDFCDCVDGSDEPGTNACNNGRFYCS---VEEKFIHSTYVNDGICDCCNGEDEW 670
FTCL+G + NDD+CDC DGSDEPGT AC NG F+C+ + +I S VNDG+CDCC+G DE+
Sbjct: 37 FTCLDGSATIPFDQVNDDYCDCKDGSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEY 106
The following BLAST results are available for this feature:
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