TCONS_00036145 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036145
Unique NameTCONS_00036145
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036145 ID=TCONS_00036145|Name=TCONS_00036145|organism=Clytia hemisphaerica|type=transcript|length=288bp
TTCAACGAGAAGAAGAGAAAGAAGTCATTTCTTGAGAACGTCAAATATGA
ATATATGGTTGCTGGATTGTCAGGCGGTGTGGTCTCCACCGCTATTTTGC
ACCCTTTTGATCTTATCAAGATTCGCTTCCAAGTGAACGATGGTTCAGGG
ACAATAAAGAATCGCCAATCATACAACGGTATTATGGACGCTGTTAGAAG
CATCACCAGGACTAATGGTATCAAGGGGCTTTATCAGGTATGCCGTGTTA
GCATTGTTGTTGTGTATCTAACTGTTATTTATCgatga
Run BLAST on NCBI

transcript from alignment at sc0001418:4427..6295-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036145 ID=TCONS_00036145|Name=TCONS_00036145|organism=Clytia hemisphaerica|type=transcript|length=1869bp|location=Sequence derived from alignment at sc0001418:4427..6295- (Clytia hemisphaerica)
TTCAACGAGAAGAAGAGAAAGAAGTCATTTCTTGAGAACGTCAAATATGA
ATATATGGTTGCTGGATTGTCAGGCGGTGTGGTCTCCACCGCTATTTTGC
ACCCTTTTGATCTTATCAAGATTCGCTTCCAAGGTATGCTGTTATGTTCT
TTGTTGGGCTGTGGTTTAGATGGTCGTGGTTATAATCACAGTTATCACAT
TCCTTTATACACTTAGATTAGATTGGCCGGTGGTCCACTGGACACGCGTT
CTTTTACCTTATCGGCCCTTTTTACGCCGGCCCCTTTTACGCCGGCCCTT
ATTATGCCACAGTCTAATTTTGTATCCCCAAGGGTTATGGGCTAATTTTT
TTATGGTAAAAAGGGAAGGGAAACAGTAAAGAAAAATTAAGTCTGGCAAA
TATAATACCACTTTTTAGTGAAAATAAAGAACTTCCTTTCATGCAGACCA
AATTTCATAACAGTGCTGGAAAATAATCTACAATATTTATAAGCCCCCCT
TCTTAAACGATCCCCCTCCTTGCTATCCCCCCCCCCTTTCTAATGAAAAT
TTCTGATCCCCCTTCTTCACTTTTTTGGAAGGTGTCATCCCCTCCCCTTA
AGAAAGGGGGGGCGGGTCCGAACTATGAAAATTTACATTGAAATGTCATT
TTTCAGTAGTAAACTGTTGAGAATTCCATCTAAAATCACTGATTTTTAAA
TATATTGAATATTTCACTGAAGTTTTAAATATGGAGTAAAAAAATGGATA
ATTTTCGTCTTTGAATCATACCTAAAGTCCTTTAAATTGAGAAATAATGA
TAAGATATTAATGCCGCTTTTAGGTTAAAATTGCAAAATCTTAGCCCTTT
TTACACCGGCCCTTTTAAAGCCGGCCCTTATTACGCCACGAGCCCAAAAA
TAGTGCCAATAAGGGCCGGTTTAAAAAGGGCCGATAAAGTATATGGAAAG
CCTGATCCATTCAAGTGGTTAGAGATCAGTGATTATATAATCGTTGTATT
GACATTCTTACATAGAAAGAATTATGACGTCATTTCCTTGTAAATTTATT
ACCAGTCTCCACAAAAAACGACCGCACCGGTATGGTTTGATAAGTGTATT
TGTCGTTAGATCCATGACAAAATCTCTCAAACGGTGCAAGTTCGATTGAA
TATCCTACTGCAAAAAGCTTTTTTGTATAATCAGGAGTGAAAAGCGATAT
ATCATGAGATATATTTCTCATCACCGAATCAATTTTACGTCTATTTACTT
CAGTGTGCATTCATTTTTGCTTCCATGCGCGGGAACCTCGTTAACGTAGC
TAGACTAACTCCTTTGAGAGCGGTTTTCCATATTATAGCAAGAAATAGTG
CACACTTAAAGCGAATGGCTCTATTATTAAGGAACAAATATCGTGGTCGA
TTTTAAACTTTAACCACGGGAATAAAGGGATTTTGAAGTATTTTATTGGA
TTTAGCTTCGTGAGAAGAGGTTGAGTTTCCGTTGAGTTTCATTTTTCTAA
GGCTAAGATCATGTTCGCAGGTATTGGTTCCGTTTCGCTCCGAAACGAAA
TTAAGCAATTCTATAGGTTAGAAATGACGTAACAATTGAATTTAACCAAT
AGAACGGTTTCATTTCGTTTCGGAGCGAGACGGAACCGTAGCATGTGAAC
GTATGGTCTATATGATTGTGTTATCTTTCCAGTAACGGACCCCCTTTTTC
TTTAACTCATTCAGTGAACGATGGTTCAGGGACAATAAAGAATCGCCAAT
CATACAACGGTATTATGGACGCTGTTAGAAGCATCACCAGGACTAATGGT
ATCAAGGGGCTTTATCAGGTATGCCGTGTTAGCATTGTTGTTGTGTATCT
AACTGTTATTTATCGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021256XLOC_021256Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036145-exon-sc0001418-1575043694:6163..6295TCONS_00036145-exon-sc0001418-1575043694:6163..6295Clytia hemisphaericaexon
TCONS_00036145-exon-sc0001418-1575043694:4427..4581TCONS_00036145-exon-sc0001418-1575043694:4427..4581Clytia hemisphaericaexon
TCONS_00036145-exon-sc0001418-1510915933:6163..6295TCONS_00036145-exon-sc0001418-1510915933:6163..6295Clytia hemisphaericaexon
TCONS_00036145-exon-sc0001418-1510915933:4427..4581TCONS_00036145-exon-sc0001418-1510915933:4427..4581Clytia hemisphaericaexon
TCONS_00036145-exon-sc0001418-1491911889:6163..6295TCONS_00036145-exon-sc0001418-1491911889:6163..6295Clytia hemisphaericaexon
TCONS_00036145-exon-sc0001418-1491911889:4427..4581TCONS_00036145-exon-sc0001418-1491911889:4427..4581Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001418supercontigsc0001418:4427..6295 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.12808	3.48614	12.6492	11.3852	80.7522	61.9066	27.577	22.5901	27.1129	24.7213	22.1842	16.9639	15.1571	14.8149	8.37365	9.80314	14.0894	17.5358	4.75032	9.94173	7.77705	7.58675	9.73506	8.38476	20.1509	18.4124	7.35296	1.30788	3.47193	7.07469
Blast
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BLAST of TCONS_00036145 vs. Swiss-Prot (Human)
Match: MFTC (Mitochondrial folate transporter/carrier OS=Homo sapiens GN=SLC25A32 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.955e-16
Identity = 33/71 (46.48%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:   25 SFLENVKYEYMVAGLSGGVVSTAILHPFDLIKIRFQVNDGSGTIKNRQSYNGIMDAVRSITRTNGIKGLYQ 237
            +   +V+YE ++AG+SGGV+S   LHP DL+KIRF V+DG   ++ R  YNGI+  + +I + +G++GLYQ
Sbjct:   16 TVFRHVRYENLIAGVSGGVLSNLALHPLDLVKIRFAVSDG---LELRPKYNGILHCLTTIWKLDGLRGLYQ 83
The following BLAST results are available for this feature:
BLAST of TCONS_00036145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MFTC1.955e-1646.48Mitochondrial folate transporter/carrier OS=Homo s... [more]
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