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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036141 ID=TCONS_00036141|Name=TCONS_00036141|organism=Clytia hemisphaerica|type=transcript|length=1085bp
GAGAGATGTTGTTGAAAAATATCTGTGTTATTTGACGCTAGAGCTGCGTT
GAGAGAAGAAGTGGAGAGATAAAATGGAGAGGTTTCCTGTTGGATTTTAC
CCGCCCTACATGCAAACACAATTCTACCCACCCTTCTATTCACAACAGCA
CCAGCAGCAACAAGTTTTGCAAGTTCCTGATCAACAACATCAACAAGgtg
caaaacaacaaaaaacagaaATTGCTGGTGAACAGTCTAAGCCAAAACGA
GAACATTGGTCGCCTAAACAGACGAATGCATTGGTCAGTGCCTGGAAGGA
AAATTTTGATGTACTCAAATCGAAAGACTGTAATAAGGCATGGGCACAAA
TATTGAAGAATGTTAACCAACACGGATGTCAAAGAAGTCTGGAgcaagtg
aaaagaaaatttggtaGGATTGAAGAAACTTATGTGAAATGTAAGGataa
aaacaagaacaaaacTGGTGAAGGTTTGAATACATGCCCATATTATGACG
ATTTGGACAGACTTCTGTGCCAGAAAAAGAAAGTCAATCTGCCAGAATTC
ACTGAAGTTGGTGCAGTTGGTGCTTTTCCTGATGATGTTGAAACGCCAGA
GCCCTTCATTGGATTCCAAACAACTGAACCTCCTGCCGGTGCAGCTGGTG
GAATTGTCGATACTGAGCCCGATGATGATGACTATGACGTAACATCAACT
GAGCCTTCTGAACAACCAACAGCAGAGAAACGTAAACGAAAGAGTGATGT
CGAATTAGACGAGTCGTTTGAATATTATGAGGAACTTAAAGCAGAGGTAA
AAGCCAAGAAACAATCCAAAGAGAAcggaaaagaaaggaaaaaaacattt
caagaaGATTTGATTGATTTACAGAAAGAACAAATGACAATGTTTAGAGA
GAGCGAAAAAcaatttcaagaatttcaaaaatcacttcTTGAAAAACAAA
TGGAAGCTGAtgccaaagaaaaagaaaatgaacggAAATTTTTCTTAGAG
TTCGCAAAAGTCATTTCAGGAGGTCAACCAAAATAAGAACttaattgaac
tttttttctgaCGTGGACAGTATCCAGTAAAATAG Run BLAST on NCBI protein sequence of TCONS_00036141-protein >TCONS_00036141-protein ID=TCONS_00036141-protein|Name=TCONS_00036141-protein|organism=Clytia hemisphaerica|type=polypeptide|length=320bp
MERFPVGFYPPYMQTQFYPPFYSQQHQQQQVLQVPDQQHQQGAKQQKTEI
AGEQSKPKREHWSPKQTNALVSAWKENFDVLKSKDCNKAWAQILKNVNQH
GCQRSLEQVKRKFGRIEETYVKCKDKNKNKTGEGLNTCPYYDDLDRLLCQ
KKKVNLPEFTEVGAVGAFPDDVETPEPFIGFQTTEPPAGAAGGIVDTEPD
DDDYDVTSTEPSEQPTAEKRKRKSDVELDESFEYYEELKAEVKAKKQSKE
NGKERKKTFQEDLIDLQKEQMTMFRESEKQFQEFQKSLLEKQMEADAKEK
ENERKFFLEFAKVISGGQPK Run BLAST on NCBI transcript from alignment at sc0001417:13798..14882 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036141 ID=TCONS_00036141|Name=TCONS_00036141|organism=Clytia hemisphaerica|type=transcript|length=1085bp|location=Sequence derived from alignment at sc0001417:13798..14882 (Clytia hemisphaerica)
CTATTTTACTGGATACTGTCCACGtcagaaaaaaagttcaattaaGTTCT
TATTTTGGTTGACCTCCTGAAATGACTTTTGCGAACTCTAAGAAAAATTT
ccgttcattttctttttctttggcaTCAGCTTCCATTTGTTTTTCAAgaa
gtgatttttgaaattcttgaaattgTTTTTCGCTCTCTCTAAACATTGTC
ATTTGTTCTTTCTGTAAATCAATCAAATCttcttgaaatgtttttttcct
ttcttttccgTTCTCTTTGGATTGTTTCTTGGCTTTTACCTCTGCTTTAA
GTTCCTCATAATATTCAAACGACTCGTCTAATTCGACATCACTCTTTCGT
TTACGTTTCTCTGCTGTTGGTTGTTCAGAAGGCTCAGTTGATGTTACGTC
ATAGTCATCATCATCGGGCTCAGTATCGACAATTCCACCAGCTGCACCGG
CAGGAGGTTCAGTTGTTTGGAATCCAATGAAGGGCTCTGGCGTTTCAACA
TCATCAGGAAAAGCACCAACTGCACCAACTTCAGTGAATTCTGGCAGATT
GACTTTCTTTTTCTGGCACAGAAGTCTGTCCAAATCGTCATAATATGGGC
ATGTATTCAAACCTTCACCAgttttgttcttgtttttatCCTTACATTTC
ACATAAGTTTCTTCAATCCtaccaaattttcttttcacttgcTCCAGACT
TCTTTGACATCCGTGTTGGTTAACATTCTTCAATATTTGTGCCCATGCCT
TATTACAGTCTTTCGATTTGAGTACATCAAAATTTTCCTTCCAGGCACTG
ACCAATGCATTCGTCTGTTTAGGCGACCAATGTTCTCGTTTTGGCTTAGA
CTGTTCACCAGCAATttctgttttttgttgttttgcacCTTGTTGATGTT
GTTGATCAGGAACTTGCAAAACTTGTTGCTGCTGGTGCTGTTGTGAATAG
AAGGGTGGGTAGAATTGTGTTTGCATGTAGGGCGGGTAAAATCCAACAGG
AAACCTCTCCATTTTATCTCTCCACTTCTTCTCTCAACGCAGCTCTAGCG
TCAAATAACACAGATATTTTTCAACAACATCTCTC Coding sequence (CDS) from alignment at sc0001417:13798..14882 >TCONS_00036141 ID=TCONS_00036141|Name=TCONS_00036141|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at sc0001417:13798..14882 (Clytia hemisphaerica)
TTATTTTGGTTGACCTCCTGAAATGACTTTTGCGAACTCTAAGAAAAATT
TccgttcattttctttttctttggcaTCAGCTTCCATTTGTTTTTCAAga
agtgatttttgaaattcttgaaattgTTTTTCGCTCTCTCTAAACATTGT
CATTTGTTCTTTCTGTAAATCAATCAAATCttcttgaaatgtttttttcc
tttcttttccgTTCTCTTTGGATTGTTTCTTGGCTTTTACCTCTGCTTTA
AGTTCCTCATAATATTCAAACGACTCGTCTAATTCGACATCACTCTTTCG
TTTACGTTTCTCTGCTGTTGGTTGTTCAGAAGGCTCAGTTGATGTTACGT
CATAGTCATCATCATCGGGCTCAGTATCGACAATTCCACCAGCTGCACCG
GCAGGAGGTTCAGTTGTTTGGAATCCAATGAAGGGCTCTGGCGTTTCAAC
ATCATCAGGAAAAGCACCAACTGCACCAACTTCAGTGAATTCTGGCAGAT
TGACTTTCTTTTTCTGGCACAGAAGTCTGTCCAAATCGTCATAATATGGG
CATGTATTCAAACCTTCACCAgttttgttcttgtttttatCCTTACATTT
CACATAAGTTTCTTCAATCCtaccaaattttcttttcacttgcTCCAGAC
TTCTTTGACATCCGTGTTGGTTAACATTCTTCAATATTTGTGCCCATGCC
TTATTACAGTCTTTCGATTTGAGTACATCAAAATTTTCCTTCCAGGCACT
GACCAATGCATTCGTCTGTTTAGGCGACCAATGTTCTCGTTTTGGCTTAG
ACTGTTCACCAGCAATttctgttttttgttgttttgcacCTTGTTGATGT
TGTTGATCAGGAACTTGCAAAACTTGTTGCTGCTGGTGCTGTTGTGAATA
GAAGGGTGGGTAGAATTGTGTTTGCATGTAGGGCGGGTAAAATCCAACAG
GAAACCTCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036141-exon-sc0001417-1491911889:13798..14882 | TCONS_00036141-exon-sc0001417-1491911889:13798..14882 | Clytia hemisphaerica | exon |
| TCONS_00036141-exon-sc0001417-1510915933:13798..14882 | TCONS_00036141-exon-sc0001417-1510915933:13798..14882 | Clytia hemisphaerica | exon |
| TCONS_00036141-exon-sc0001417-1575043694:13798..14882 | TCONS_00036141-exon-sc0001417-1575043694:13798..14882 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001417 | supercontig | sc0001417:13798..14882 . |
Blast
The following BLAST results are available for this feature:
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