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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036137 ID=TCONS_00036137|Name=TCONS_00036137|organism=Clytia hemisphaerica|type=transcript|length=1542bp
tgaattttagagatAGTAAAGAATGCCTAcaataaatttgaataaaagaa
cAATGTTTTCTTGGAATAAGAAGAAAATAGAGCTTGGTTTTGAATTGAAA
TCTCATCAATTTGCAAACAATGTTCTACAAAGATTTGATTGGACCGTGTC
TTCCTCTAGTGAGACTGAAGAAGAAATACTTGCTGATGAAATTTCTTATG
TAGTGTCGGATAAAAGTGTAGATGTAACTGGTGTTGGCAGTGTTGCAGAT
CCTCGTGACAGTGAAACAACAACAAATCATAATACGAGTatAGTTGAACG
TGACTCCAAATTGTGTTGCTGATTCTAATCCACCTGTACTTGGTATGTTT
GGAATAacaatttttccttcactcAGCATTGATAACTCAGCATTGATAAC
TCAGCATTCTTTctgtaaataattattttggcctttcatttgcatttTAG
GTGCCTGTGATATTGAATTTTCCTAAACTCGCATAAAATTTAGATTTCTT
AATGATCATATTGATGTAACAAATTTGTTGGATGTGTATATTTCTGAATA
TATATTTNGCCTTTCATTTGCATTTTAGGTGCCtgtgatacatgtttttt
ttttataagcaagtgtatgccccttggttaGGCTCGTGTATGCTGAAGTT
CTCAAAGCATTCAGGCATagattatgcttattatatgcttgtaaatcatg
cttatgattcaccccgagccaattTTTTAGTGAATTTTCAGAAATGTTGT
AAAAAtctgttcagattttgggacaatggaatgtagctagccgtggaatg
tctttttttacttgacctccaTCTACCAGATCTTTtgaaacagataaaaa
atgacaacttgaaaNAGAGCGCCCCCCAGACCCCCTGCTCAAAATTTACT
CGCTACGCTCGTAAAAATTACCGGCCAACTTAGatttccttatttgcagc
actgttaGGTGCCTGTGATATTGAATTTTCCTAAACACGCATAAAATTTA
GATTTCTTAATGATCATATTGATGTAACAAATTTATTGGATGTGTATATT
tctgtatatatattttttaatatatagGAACATTTCAATCTTTATTGAAT
TCAACATCCAAGGGAAAAAGGAAAGATCACAGTTTTATCATCGGTGACAA
CTTATATCAATTCTTCAAAGTACTACACCACAAGAAGAAATGATaacttt
ctttcaaaagttgCAAAAATTGGACGTAAAAAACGacGCTTAGAAATCGG
AAGAAGGTGCTAAAAGCGAAGACGACTCTCTCTGACTTCGATAAAACGGT
GATAGATAAGGTTTTAACGATGGACTTCATGTCGTCCGAAGATGAAAAGG
AGGACTAGAGGTTCAGCCACTGAGATGGCGTTCGCAAAAATGTGATAAGT
ACttttagtcgcgcggctgaggtcgaaaaaagtggcttccacttttttcg
atggaaactctcgaattagtatatgtagattccaaaatcaaaaagtttcc
acgatattatcgtgcaagtaacgagtaaatggcgattttttg Run BLAST on NCBI transcript from alignment at sc0001417:1959..7757- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036137 ID=TCONS_00036137|Name=TCONS_00036137|organism=Clytia hemisphaerica|type=transcript|length=5799bp|location=Sequence derived from alignment at sc0001417:1959..7757- (Clytia hemisphaerica)
TGAATTTTAGAGATAGTAAAGAATGCCTACAATAAATTTGAATAAAAGAA
CAATGTTTTCTTGGAATAAGAAGAAAATAGAGCTTGGTTTTGAATTGAAA
TCTCATCAATTTGCAAACAATGTTCTACAAAGATTTGATTGGACCGTGTC
TTCCTCTAGTGAGACTGAAGAAGAAATACTTGCTGATGAAATTTCTTATG
TAGTGTCGGATAAAAGTGTAGATGTAACTGGTGTTGGCAGTGTTGCAGAT
CCTCGTGACAGTGAAACAACAACAAATCATAATACGAGTGTTAGTGGTAT
TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGTTTTAATTGATTATTTGATGGTGTGTGCTTGTCTTAAATCT
GTTAGTTGAAAAAATCTCTGCGTTAAAACATGAACTCTTTTCCTGCTTAA
ACTTGACTTTTTTTGTTATTATATCAACTTCTAATGTTCCAATTAAAATC
AATAAAAAAGAGGAGATATCAATCGATTTATTTTCCAACCTTTTTGGATT
ATATATAATAACAGTAGAGTTTTTCACGAGCCTGATTACATAGTTTGATT
GTTTATCGATTTATATTTAATTTTTCTTAATCATTTATCGATCGAGAATA
TCTGAGATAAAAACCTCTTGTACTTTTAAATTCTGAAATTATGAAAAACT
TAACTGATCTCTTGAGCTAGTAGAAAAGTTTGCTTTATCAAGTTTATGGT
AGTCGAGAACGAGGAGTGGATCATCTGGAAAATTTGTACAAGATTTTGTT
GATTTTATGTGATGTGTTATTTTTTTTTGTGATTTATCTGGGATGTTTTG
CGAATTTTAACGTTTTTGTGATTTTAGAATTTTTTTCCAGTGGTTTACAC
CTTGATCTAGAATTCTCCTTATCTTACACTCATNACGTAAAAAAACGGTA
AGAGGCCTTATGCTTAAAATCTATGAACTATACTGTGTTCTTTCATTTTC
ATATAAACAATAGATTGATGTAATGACGTGGCCACCCCATCTTTGTGGGC
ATAAAAAAACATTTGAAAAACATATATGTTAGGCTTTTTTATAGATTTAC
CGGGGATCTTACTTGAAAGTTGTTGTGCGCAAAAATTTTGCCTGCAATGA
TAGTAGCTGAACACTTTGAAGAAGTTCGGAAAACATTAAATCACATTTCG
TTGATTTCGTTCAATAGTACTTTATCTTTTCAACCTGCATTACTTTTCAG
CTTTTACAAGCTTTTACAGTATTACTTCAATCATTTTTGTCTTTTTCCTT
TTTTCAGAAGCTTAGAAATCGGAAGAAGGTGCTAAAAGCGAAGACGACTA
TCTCTGACGTCGATAAAATGGTGATCGATAAGGTTTTAACGATGGACTTC
ATGTCATCCGAAGATGAAAAGGAGGACTCGAGGTTCAACCACTGAGATGG
CGTTCGCAAAAATGTGATAAGTACTTTGAAGCGTTGGATAAAAAGACCAT
GACAAAGCGATCGACAAAAGCGCAAAGACAAACTGTTATACGCAAGATGG
GGCCTTTCAGTGGAAGGGCAGCACCTGAGGTCGACGAATCAAATGCATGG
ACAATAATAACTAAATAAACCTTTAACNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCTGGGCAGTAGACATGCTTGTAAGAAAATCAATATGGAAAGGCTTTT
TAGCCACTTGTTGAATAATGGTTTGACGAGCATGTGGTGGTGAAATTTCT
CAAATTTAGGCAATTTGAAAAATGTTGGAAGGATAAGAGTAAAATTTTGA
TATTTTAGTACCTGCCAAAATAAATGCAGTTATTGTACAGTACATGTTTA
AAATTTTGTAGTATAGATTGTTACTTATATATATTCTTACATTTCATTAG
CAGTCTAATTTATGTAATCCAAACTCCTTTAATTCGAAATTTCACACAAT
TTGCAAATCGTTTATGTATCTCTGAAGTTGAAAATTCACACAATACGATC
AAATATTACGACCCCTTCACCATTTGAATTACATGAGTTGAACTATATCT
TGTAAATTTCACTTTTTTTATGGAAAATATTCGAAAATAACTCCTCAACA
TTATTGTTTGATAACTTGTTATTTATTATGTTTTATGATTTGGAGGCAAC
TTCTCAAATATCAATCAGCAAACAAGACTTTTGCAAAAAATTTAAACATA
TTCTTAACATTTAAAATTTACTGGGAATATAATATTTCTAATCACTGGAA
ACCCATAGAAATACTATATTTTCAAGATATTTCGAGGATTGGAAAACCGT
ATTTCCAATACATTTGTAAATATGGAAATATGACTTTTCTATATTTCCAA
AGCTTTGGAAATATGATTTTTCCATATTTCCAAAGTTTTGGAAATACTAT
ATTTCCAATACATTTGTAAATATGGAAATATGACTTTTCTATATTTCCAA
AGTTTTGGAAATACCATATTTCCACATTTACNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCAA
AACTTTGGAAATATAGAAAAGTCATATTTCCATATTTACAAATGTATTGG
AAATATCATATTTCTAATCACTGGAAATCCCTAGAAATGCCATATTTTCA
AGATATTTCCAGGATTGGAAATCTCTTATTTCGCCCAGTGTAACTAATGA
GGAGCGTGCCGTTAAATACAAAAGGAATATAAAAGAAACATGTAGACCTA
ATTGATTTAAACCTTGGTCTGAACACGACNTATCGAGTTCATGGTAGTCG
AGAACGAGGGGTGGATCATCTGGAAAATTTGTACAAGATTTTTTTAATGT
GTTATTTTTTTTGTGATTTATTTGTGATGTTTTGCGAATTTTAACATTTT
GTGATTACAGAATTTTTTTCCAGTGGTTACACCTCGATCTAGAATTCTAA
TCTTACACTCATCGTATTGAAAAGTAAAGATGCAGGATTCTAATGAGTTT
AATTTAATTATTTTTAAGATAGTTGAACGTGACTCCAAATTGTGTTGCTG
ATTCTAATCCACCTGTACTTGGTATGTTTGGAATAACAATTTTTCCTTCA
CTCAGCATTGATAACTCAGCATTGATAACTCAGCATTCTTTCTGTAAATA
ATTATTTTGGCCTTTCATTTGCATTTTAGGTGCCTGTGATATTGAATTTT
CCTAAACTCGCATAAAATTTAGATTTCTTAATGATCATATTGATGTAACA
AATTTGTTGGATGTGTATATTTCTGAATATATATTTNGCCTTTCATTTGC
ATTTTAGGTGCCTGTGATACATGTTTTTTTTTTATAAGCAAGTGTATGCC
CCTTGGTTAGGCTCGTGTATGCTGAAGTTCTCAAAGCATTCAGGCATAGA
TTATGCTTATTATATGCTTGTAAATCATGCTTATGATTCACCCCGAGCCA
ATTTTTTAGTGAATTTTCAGAAATGTTGTAAAAATCTGTTCAGATTTTGG
GACAATGGAATGTAGCTAGCCGTGGAATGTCTTTTTTTACTTGACCTCCA
TCTACCAGATCTTTTGAAACAGATAAAAAATGACAACTTGAAANAGAGCG
CCCCCCAGACCCCCTGCTCAAAATTTACTCGCTACGCTCGTAAAAATTAC
CGGCCAACTTAGATTTCCTTATTTGCAGCACTGTTAGGTGCCTGTGATAT
TGAATTTTCCTAAACACGCATAAAATTTAGATTTCTTAATGATCATATTG
ATGTAACAAATTTATTGGATGTGTATATTTCTGTATATATATTTTTTAAT
ATATAGGAACATTTCAATCTTTATTGAATTCAACATCCAAGGGAAAAAGG
AAAGATCACAGTTTTATGTAAGTGAATACAAATGAAGTAATTTTTAGAAT
ATTAGAAGAATAGTTATAATTCCATTTCATGAAAGAGTAATTGAGATTTA
TTTGTTGTATTTATTGTTTTTATTATGAACAGAAAATGGTTGAGATATCT
GGAGATATCTCTTTTTTATTTTCATTTTTTTATATTGCTGCCTTTGAATT
AATATGCAAATGGTTGAATAGAAAAGGATTTTTTTGATTTAGTGAGAGGA
AATTAATTAGAGGTTAGTAATTTTGTCTCATCTTCAGTTATCTCTTCAAA
AAGTACCATAATGAATATTCATTCCCTCTTTTTCAATCTCAGCATCGGTG
ACAACTTATATCAATTCTTCAAAGTACTACACCACAAGAAGAAATGATAA
CTTTCTTTCAAAAGTTGCAAAAATTGGACGTAAAAAACGGTAAGAGGCCT
TATGCTTAAAATCTATGAACTATACTGTGTTCTTTCATTTTCATATAAAC
AATAGATTGATGTAATGACGTGGCCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTGTGGGCATACTATCACAATAGCTGAAGCTTTCTGTATTGAAA
CCGTTAACACGTATTTGAAAAACATATATGTTAGGCTTTTTTATAGATTT
ACCGGGGGTCTTACTTGAAAGTTGTTGAGCGCAAAAATTTTGCCGGCAAT
GATAGTAGCTAAACACTTTGAAGAAGTTCGGAAAACATTAAGTCACAGAT
TTCATTCAATAGTACTTTATCTTTTCAACCTGCATTACTTTTCAGCTTTC
ACAGTATTACTTCAATCATTTTTGTCTTTTTCCTTTTTTCAGACGCTTAG
AAATCGGAAGAAGGTGCTAAAAGCGAAGACGACTCTCTCTGACTTCGATA
AAACGGTGATAGATAAGGTTTTAACGATGGACTTCATGTCGTCCGAAGAT
GAAAAGGAGGACTAGAGGTTCAGCCACTGAGATGGCGTTCGCAAAAATGT
GATAAGTACTTTTAGTCGCGCGGCTGAGGTCGAAAAAAGTGGCTTCCACT
TTTTTCGATGGAAACTCTCGAATTAGTATATGTAGATTCCAAAATCAAAA
AGTTTCCACGATATTATCGTGCAAGTAACGAGTAAATGGCGATTTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036137-exon-sc0001417-1575043694:7469..7757 | TCONS_00036137-exon-sc0001417-1575043694:7469..7757 | Clytia hemisphaerica | exon |
| TCONS_00036137-exon-sc0001417-1575043694:3191..4039 | TCONS_00036137-exon-sc0001417-1575043694:3191..4039 | Clytia hemisphaerica | exon |
| TCONS_00036137-exon-sc0001417-1575043694:2769..2865 | TCONS_00036137-exon-sc0001417-1575043694:2769..2865 | Clytia hemisphaerica | exon |
| TCONS_00036137-exon-sc0001417-1575043694:1959..2265 | TCONS_00036137-exon-sc0001417-1575043694:1959..2265 | Clytia hemisphaerica | exon |
| TCONS_00036137-exon-sc0001417-1510915933:7469..7757 | TCONS_00036137-exon-sc0001417-1510915933:7469..7757 | Clytia hemisphaerica | exon |
| TCONS_00036137-exon-sc0001417-1510915933:3191..4039 | TCONS_00036137-exon-sc0001417-1510915933:3191..4039 | Clytia hemisphaerica | exon |
| TCONS_00036137-exon-sc0001417-1510915933:2769..2865 | TCONS_00036137-exon-sc0001417-1510915933:2769..2865 | Clytia hemisphaerica | exon |
| TCONS_00036137-exon-sc0001417-1510915933:1959..2265 | TCONS_00036137-exon-sc0001417-1510915933:1959..2265 | Clytia hemisphaerica | exon |
| TCONS_00036137-exon-sc0001417-1491911889:7469..7757 | TCONS_00036137-exon-sc0001417-1491911889:7469..7757 | Clytia hemisphaerica | exon |
| TCONS_00036137-exon-sc0001417-1491911889:3191..4039 | TCONS_00036137-exon-sc0001417-1491911889:3191..4039 | Clytia hemisphaerica | exon |
| TCONS_00036137-exon-sc0001417-1491911889:2769..2865 | TCONS_00036137-exon-sc0001417-1491911889:2769..2865 | Clytia hemisphaerica | exon |
| TCONS_00036137-exon-sc0001417-1491911889:1959..2265 | TCONS_00036137-exon-sc0001417-1491911889:1959..2265 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001417 | supercontig | sc0001417:1959..7757 - |
Blast
The following BLAST results are available for this feature:
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