TCONS_00036136 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036136
Unique NameTCONS_00036136
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length786

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036136 ID=TCONS_00036136|Name=TCONS_00036136|organism=Clytia hemisphaerica|type=transcript|length=786bp
AAAGAATGCCTAcaataaatttgaataaaagaacAATGTTTTCTTGGAAT
AAGAAGAAAATAGAGCTTGGTTTTGAATTGAAATCTCATCAATTTGCAAA
CAATGTTCTACAAAGATTTGATTGGACCGTGTCTTCCTCTAGTGAGACTG
AAGAAGAAATACTTGCTGATGAAATTTCTTATGTAGTGTCGGATAAAAGT
GTAGATGTAACTGGTGTTGGCAGTGTTGCAGATCCTCGTGACAGTGAAAC
AACAACAAATCATAATACGAGTTTGAACGTGACTCCAAATTGTGTTGCTG
ATTCTAATCCACCTGTACTTGGAACATTTCAATCTTTATTGAATTCAACA
TCCAAGGGAAAAAGGAAAGATCACAGTTTTATCATCGGTGACAACTTATA
TCAATTCTTCAAAGTACTACACCACAAGAAGAAATGATaactttctttca
aaagttgCAAAAATTGGACGTAAAAAACGacGCTTAGAAATCGGAAGAAG
GTGCTAAAAGCGAAGACGACTCTCTCTGACTTCGATAAAACGGTGATAGA
TAAGGTTTTAACGATGGACTTCATGTCGTCCGAAGATGAAAAGGAGGACT
AGAGGTTCAGCCACTGAGATGGCGTTCGCAAAAATGTGATAAGTACtttt
agtcgcgcggctgaggtcgaaaaaagtggcttccacttttttcgatggaa
actctcgaattagtatatgtagattccaaaatcaaaaagtttccacgata
ttatcgtgcaagtaacgagtaaatggcgattttttg
Run BLAST on NCBI

protein sequence of TCONS_00036136-protein

>TCONS_00036136-protein ID=TCONS_00036136-protein|Name=TCONS_00036136-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
RMPTINLNKRTMFSWNKKKIELGFELKSHQFANNVLQRFDWTVSSSSETE
EEILADEISYVVSDKSVDVTGVGSVADPRDSETTTNHNTSLNVTPNCVAD
SNPPVLGTFQSLLNSTSKGKRKDHSFIIGDNLYQFFKVLHHKKK
Run BLAST on NCBI

transcript from alignment at sc0001417:1959..7740-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036136 ID=TCONS_00036136|Name=TCONS_00036136|organism=Clytia hemisphaerica|type=transcript|length=5782bp|location=Sequence derived from alignment at sc0001417:1959..7740- (Clytia hemisphaerica)
AAAGAATGCCTACAATAAATTTGAATAAAAGAACAATGTTTTCTTGGAAT
AAGAAGAAAATAGAGCTTGGTTTTGAATTGAAATCTCATCAATTTGCAAA
CAATGTTCTACAAAGATTTGATTGGACCGTGTCTTCCTCTAGTGAGACTG
AAGAAGAAATACTTGCTGATGAAATTTCTTATGTAGTGTCGGATAAAAGT
GTAGATGTAACTGGTGTTGGCAGTGTTGCAGATCCTCGTGACAGTGAAAC
AACAACAAATCATAATACGAGTGTTAGTGGTATTANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTAATT
GATTATTTGATGGTGTGTGCTTGTCTTAAATCTGTTAGTTGAAAAAATCT
CTGCGTTAAAACATGAACTCTTTTCCTGCTTAAACTTGACTTTTTTTGTT
ATTATATCAACTTCTAATGTTCCAATTAAAATCAATAAAAAAGAGGAGAT
ATCAATCGATTTATTTTCCAACCTTTTTGGATTATATATAATAACAGTAG
AGTTTTTCACGAGCCTGATTACATAGTTTGATTGTTTATCGATTTATATT
TAATTTTTCTTAATCATTTATCGATCGAGAATATCTGAGATAAAAACCTC
TTGTACTTTTAAATTCTGAAATTATGAAAAACTTAACTGATCTCTTGAGC
TAGTAGAAAAGTTTGCTTTATCAAGTTTATGGTAGTCGAGAACGAGGAGT
GGATCATCTGGAAAATTTGTACAAGATTTTGTTGATTTTATGTGATGTGT
TATTTTTTTTTGTGATTTATCTGGGATGTTTTGCGAATTTTAACGTTTTT
GTGATTTTAGAATTTTTTTCCAGTGGTTTACACCTTGATCTAGAATTCTC
CTTATCTTACACTCATNACGTAAAAAAACGGTAAGAGGCCTTATGCTTAA
AATCTATGAACTATACTGTGTTCTTTCATTTTCATATAAACAATAGATTG
ATGTAATGACGTGGCCACCCCATCTTTGTGGGCATAAAAAAACATTTGAA
AAACATATATGTTAGGCTTTTTTATAGATTTACCGGGGATCTTACTTGAA
AGTTGTTGTGCGCAAAAATTTTGCCTGCAATGATAGTAGCTGAACACTTT
GAAGAAGTTCGGAAAACATTAAATCACATTTCGTTGATTTCGTTCAATAG
TACTTTATCTTTTCAACCTGCATTACTTTTCAGCTTTTACAAGCTTTTAC
AGTATTACTTCAATCATTTTTGTCTTTTTCCTTTTTTCAGAAGCTTAGAA
ATCGGAAGAAGGTGCTAAAAGCGAAGACGACTATCTCTGACGTCGATAAA
ATGGTGATCGATAAGGTTTTAACGATGGACTTCATGTCATCCGAAGATGA
AAAGGAGGACTCGAGGTTCAACCACTGAGATGGCGTTCGCAAAAATGTGA
TAAGTACTTTGAAGCGTTGGATAAAAAGACCATGACAAAGCGATCGACAA
AAGCGCAAAGACAAACTGTTATACGCAAGATGGGGCCTTTCAGTGGAAGG
GCAGCACCTGAGGTCGACGAATCAAATGCATGGACAATAATAACTAAATA
AACCTTTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGGCAGTAGACA
TGCTTGTAAGAAAATCAATATGGAAAGGCTTTTTAGCCACTTGTTGAATA
ATGGTTTGACGAGCATGTGGTGGTGAAATTTCTCAAATTTAGGCAATTTG
AAAAATGTTGGAAGGATAAGAGTAAAATTTTGATATTTTAGTACCTGCCA
AAATAAATGCAGTTATTGTACAGTACATGTTTAAAATTTTGTAGTATAGA
TTGTTACTTATATATATTCTTACATTTCATTAGCAGTCTAATTTATGTAA
TCCAAACTCCTTTAATTCGAAATTTCACACAATTTGCAAATCGTTTATGT
ATCTCTGAAGTTGAAAATTCACACAATACGATCAAATATTACGACCCCTT
CACCATTTGAATTACATGAGTTGAACTATATCTTGTAAATTTCACTTTTT
TTATGGAAAATATTCGAAAATAACTCCTCAACATTATTGTTTGATAACTT
GTTATTTATTATGTTTTATGATTTGGAGGCAACTTCTCAAATATCAATCA
GCAAACAAGACTTTTGCAAAAAATTTAAACATATTCTTAACATTTAAAAT
TTACTGGGAATATAATATTTCTAATCACTGGAAACCCATAGAAATACTAT
ATTTTCAAGATATTTCGAGGATTGGAAAACCGTATTTCCAATACATTTGT
AAATATGGAAATATGACTTTTCTATATTTCCAAAGCTTTGGAAATATGAT
TTTTCCATATTTCCAAAGTTTTGGAAATACTATATTTCCAATACATTTGT
AAATATGGAAATATGACTTTTCTATATTTCCAAAGTTTTGGAAATACCAT
ATTTCCACATTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCAAAACTTTGGAAATATAGA
AAAGTCATATTTCCATATTTACAAATGTATTGGAAATATCATATTTCTAA
TCACTGGAAATCCCTAGAAATGCCATATTTTCAAGATATTTCCAGGATTG
GAAATCTCTTATTTCGCCCAGTGTAACTAATGAGGAGCGTGCCGTTAAAT
ACAAAAGGAATATAAAAGAAACATGTAGACCTAATTGATTTAAACCTTGG
TCTGAACACGACNTATCGAGTTCATGGTAGTCGAGAACGAGGGGTGGATC
ATCTGGAAAATTTGTACAAGATTTTTTTAATGTGTTATTTTTTTTGTGAT
TTATTTGTGATGTTTTGCGAATTTTAACATTTTGTGATTACAGAATTTTT
TTCCAGTGGTTACACCTCGATCTAGAATTCTAATCTTACACTCATCGTAT
TGAAAAGTAAAGATGCAGGATTCTAATGAGTTTAATTTAATTATTTTTAA
GATAGTTGAACGTGACTCCAAATTGTGTTGCTGATTCTAATCCACCTGTA
CTTGGTATGTTTGGAATAACAATTTTTCCTTCACTCAGCATTGATAACTC
AGCATTGATAACTCAGCATTCTTTCTGTAAATAATTATTTTGGCCTTTCA
TTTGCATTTTAGGTGCCTGTGATATTGAATTTTCCTAAACTCGCATAAAA
TTTAGATTTCTTAATGATCATATTGATGTAACAAATTTGTTGGATGTGTA
TATTTCTGAATATATATTTNGCCTTTCATTTGCATTTTAGGTGCCTGTGA
TACATGTTTTTTTTTTATAAGCAAGTGTATGCCCCTTGGTTAGGCTCGTG
TATGCTGAAGTTCTCAAAGCATTCAGGCATAGATTATGCTTATTATATGC
TTGTAAATCATGCTTATGATTCACCCCGAGCCAATTTTTTAGTGAATTTT
CAGAAATGTTGTAAAAATCTGTTCAGATTTTGGGACAATGGAATGTAGCT
AGCCGTGGAATGTCTTTTTTTACTTGACCTCCATCTACCAGATCTTTTGA
AACAGATAAAAAATGACAACTTGAAANAGAGCGCCCCCCAGACCCCCTGC
TCAAAATTTACTCGCTACGCTCGTAAAAATTACCGGCCAACTTAGATTTC
CTTATTTGCAGCACTGTTAGGTGCCTGTGATATTGAATTTTCCTAAACAC
GCATAAAATTTAGATTTCTTAATGATCATATTGATGTAACAAATTTATTG
GATGTGTATATTTCTGTATATATATTTTTTAATATATAGGAACATTTCAA
TCTTTATTGAATTCAACATCCAAGGGAAAAAGGAAAGATCACAGTTTTAT
GTAAGTGAATACAAATGAAGTAATTTTTAGAATATTAGAAGAATAGTTAT
AATTCCATTTCATGAAAGAGTAATTGAGATTTATTTGTTGTATTTATTGT
TTTTATTATGAACAGAAAATGGTTGAGATATCTGGAGATATCTCTTTTTT
ATTTTCATTTTTTTATATTGCTGCCTTTGAATTAATATGCAAATGGTTGA
ATAGAAAAGGATTTTTTTGATTTAGTGAGAGGAAATTAATTAGAGGTTAG
TAATTTTGTCTCATCTTCAGTTATCTCTTCAAAAAGTACCATAATGAATA
TTCATTCCCTCTTTTTCAATCTCAGCATCGGTGACAACTTATATCAATTC
TTCAAAGTACTACACCACAAGAAGAAATGATAACTTTCTTTCAAAAGTTG
CAAAAATTGGACGTAAAAAACGGTAAGAGGCCTTATGCTTAAAATCTATG
AACTATACTGTGTTCTTTCATTTTCATATAAACAATAGATTGATGTAATG
ACGTGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGGGCATA
CTATCACAATAGCTGAAGCTTTCTGTATTGAAACCGTTAACACGTATTTG
AAAAACATATATGTTAGGCTTTTTTATAGATTTACCGGGGGTCTTACTTG
AAAGTTGTTGAGCGCAAAAATTTTGCCGGCAATGATAGTAGCTAAACACT
TTGAAGAAGTTCGGAAAACATTAAGTCACAGATTTCATTCAATAGTACTT
TATCTTTTCAACCTGCATTACTTTTCAGCTTTCACAGTATTACTTCAATC
ATTTTTGTCTTTTTCCTTTTTTCAGACGCTTAGAAATCGGAAGAAGGTGC
TAAAAGCGAAGACGACTCTCTCTGACTTCGATAAAACGGTGATAGATAAG
GTTTTAACGATGGACTTCATGTCGTCCGAAGATGAAAAGGAGGACTAGAG
GTTCAGCCACTGAGATGGCGTTCGCAAAAATGTGATAAGTACTTTTAGTC
GCGCGGCTGAGGTCGAAAAAAGTGGCTTCCACTTTTTTCGATGGAAACTC
TCGAATTAGTATATGTAGATTCCAAAATCAAAAAGTTTCCACGATATTAT
CGTGCAAGTAACGAGTAAATGGCGATTTTTTG

Coding sequence (CDS) from alignment at sc0001417:1959..7740-

>TCONS_00036136 ID=TCONS_00036136|Name=TCONS_00036136|organism=Clytia hemisphaerica|type=CDS|length=1740bp|location=Sequence derived from alignment at sc0001417:1959..7740- (Clytia hemisphaerica)
CATCGGTGACAACTTATATCAATTCTTCAAAGTACTACACCACAAGAAGA
AATGAGAACATTTCAATCTTTATTGAATTCAACATCCAAGGGAAAAAGGA
AAGATCACAGTTTTATTTGAACGTGACTCCAAATTGTGTTGCTGATTCTA
ATCCACCTGTACTTGAGAATGCCTACAATAAATTTGAATAAAAGAACAAT
GTTTTCTTGGAATAAGAAGAAAATAGAGCTTGGTTTTGAATTGAAATCTC
ATCAATTTGCAAACAATGTTCTACAAAGATTTGATTGGACCGTGTCTTCC
TCTAGTGAGACTGAAGAAGAAATACTTGCTGATGAAATTTCTTATGTAGT
GTCGGATAAAAGTGTAGATGTAACTGGTGTTGGCAGTGTTGCAGATCCTC
GTGACAGTGAAACAACAACAAATCATAATACGAGTCATCGGTGACAACTT
ATATCAATTCTTCAAAGTACTACACCACAAGAAGAAATGAGAACATTTCA
ATCTTTATTGAATTCAACATCCAAGGGAAAAAGGAAAGATCACAGTTTTA
TTTGAACGTGACTCCAAATTGTGTTGCTGATTCTAATCCACCTGTACTTG
AGAATGCCTACAATAAATTTGAATAAAAGAACAATGTTTTCTTGGAATAA
GAAGAAAATAGAGCTTGGTTTTGAATTGAAATCTCATCAATTTGCAAACA
ATGTTCTACAAAGATTTGATTGGACCGTGTCTTCCTCTAGTGAGACTGAA
GAAGAAATACTTGCTGATGAAATTTCTTATGTAGTGTCGGATAAAAGTGT
AGATGTAACTGGTGTTGGCAGTGTTGCAGATCCTCGTGACAGTGAAACAA
CAACAAATCATAATACGAGTCATCGGTGACAACTTATATCAATTCTTCAA
AGTACTACACCACAAGAAGAAATGAGAACATTTCAATCTTTATTGAATTC
AACATCCAAGGGAAAAAGGAAAGATCACAGTTTTATTTGAACGTGACTCC
AAATTGTGTTGCTGATTCTAATCCACCTGTACTTGAGAATGCCTACAATA
AATTTGAATAAAAGAACAATGTTTTCTTGGAATAAGAAGAAAATAGAGCT
TGGTTTTGAATTGAAATCTCATCAATTTGCAAACAATGTTCTACAAAGAT
TTGATTGGACCGTGTCTTCCTCTAGTGAGACTGAAGAAGAAATACTTGCT
GATGAAATTTCTTATGTAGTGTCGGATAAAAGTGTAGATGTAACTGGTGT
TGGCAGTGTTGCAGATCCTCGTGACAGTGAAACAACAACAAATCATAATA
CGAGTCATCGGTGACAACTTATATCAATTCTTCAAAGTACTACACCACAA
GAAGAAATGAGAACATTTCAATCTTTATTGAATTCAACATCCAAGGGAAA
AAGGAAAGATCACAGTTTTATTTGAACGTGACTCCAAATTGTGTTGCTGA
TTCTAATCCACCTGTACTTGAGAATGCCTACAATAAATTTGAATAAAAGA
ACAATGTTTTCTTGGAATAAGAAGAAAATAGAGCTTGGTTTTGAATTGAA
ATCTCATCAATTTGCAAACAATGTTCTACAAAGATTTGATTGGACCGTGT
CTTCCTCTAGTGAGACTGAAGAAGAAATACTTGCTGATGAAATTTCTTAT
GTAGTGTCGGATAAAAGTGTAGATGTAACTGGTGTTGGCAGTGTTGCAGA
TCCTCGTGACAGTGAAACAACAACAAATCATAATACGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021248XLOC_021248Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036136-exon-sc0001417-1575043694:7469..7740TCONS_00036136-exon-sc0001417-1575043694:7469..7740Clytia hemisphaericaexon
TCONS_00036136-exon-sc0001417-1575043694:3987..4035TCONS_00036136-exon-sc0001417-1575043694:3987..4035Clytia hemisphaericaexon
TCONS_00036136-exon-sc0001417-1575043694:3191..3251TCONS_00036136-exon-sc0001417-1575043694:3191..3251Clytia hemisphaericaexon
TCONS_00036136-exon-sc0001417-1575043694:2769..2865TCONS_00036136-exon-sc0001417-1575043694:2769..2865Clytia hemisphaericaexon
TCONS_00036136-exon-sc0001417-1575043694:1959..2265TCONS_00036136-exon-sc0001417-1575043694:1959..2265Clytia hemisphaericaexon
TCONS_00036136-exon-sc0001417-1510915933:7469..7740TCONS_00036136-exon-sc0001417-1510915933:7469..7740Clytia hemisphaericaexon
TCONS_00036136-exon-sc0001417-1510915933:3987..4035TCONS_00036136-exon-sc0001417-1510915933:3987..4035Clytia hemisphaericaexon
TCONS_00036136-exon-sc0001417-1510915933:3191..3251TCONS_00036136-exon-sc0001417-1510915933:3191..3251Clytia hemisphaericaexon
TCONS_00036136-exon-sc0001417-1510915933:2769..2865TCONS_00036136-exon-sc0001417-1510915933:2769..2865Clytia hemisphaericaexon
TCONS_00036136-exon-sc0001417-1510915933:1959..2265TCONS_00036136-exon-sc0001417-1510915933:1959..2265Clytia hemisphaericaexon
TCONS_00036136-exon-sc0001417-1491911889:7469..7740TCONS_00036136-exon-sc0001417-1491911889:7469..7740Clytia hemisphaericaexon
TCONS_00036136-exon-sc0001417-1491911889:3987..4035TCONS_00036136-exon-sc0001417-1491911889:3987..4035Clytia hemisphaericaexon
TCONS_00036136-exon-sc0001417-1491911889:3191..3251TCONS_00036136-exon-sc0001417-1491911889:3191..3251Clytia hemisphaericaexon
TCONS_00036136-exon-sc0001417-1491911889:2769..2865TCONS_00036136-exon-sc0001417-1491911889:2769..2865Clytia hemisphaericaexon
TCONS_00036136-exon-sc0001417-1491911889:1959..2265TCONS_00036136-exon-sc0001417-1491911889:1959..2265Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036136-proteinTCONS_00036136-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001417supercontigsc0001417:1959..7740 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.264869	0.196227	0.00288469	0	5.8982	4.95664	3.30659	3.90859	1.57025	3.55316	1.74042	1.57352	2.17272	1.15784	0.277125	1.239	0.568922	0.779257	0.649675	1.07273	0.141996	0.688411	0.514902	0.334763	1.79992	2.59518	2.51966	1.92074	1.57682	1.32663
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036136 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top