TCONS_00036134 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036134
Unique NameTCONS_00036134
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length866

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036134 ID=TCONS_00036134|Name=TCONS_00036134|organism=Clytia hemisphaerica|type=transcript|length=866bp
CAGCTTTTCTTTGGTGTGTATTCTTTTATGTTGCTTTAAAGAACCATTTG
TTTTGaagcatttaccacattcttcacatttAAATAACTTTTCTTCAGTG
TGTATTATTTTATGTTTCTTTAAAGAACTAattgttttaaagcatttacA
ACATTCTTCACATTTAAATAACTTTTCTTCAGTGTGTATTATTTTATGTT
TCTTTAAAGAACTAattgttttaaagcatttacAACATTCTTCACATTTG
AATGGCTTTTCTTCGGTGTGTAACTTAATATGCTTTTTTAAAGAACCGTT
TGTTTTAAGGTTTTTACCACATTCCTCACAATTAAACGGCTTAATGCTGC
TATGCACTATAAGATGCTGTGTTAGACCATCTGATTGGgcaaaacattta
ccacaaTATTGACACATGAAAGGTCTTTCACTAGTGTGAATTCTAAAATG
TCTCTTCAAATCACAGTTGAACTTGAGAGCTTTACCACACTCTTTGCATT
TAAAACTTTGGCCACGTTCTTTTGTGATAAGATTATTTTTCCTTGTCTTG
AGAATAGGATTTTCTACTTGAAAATTGTTGGCATCTGTTGTTAAGTTTGT
TGGTGGAATTATTTCATCAAGTTCAATTTTAATATGAAAAGAGTCTGATT
GATGCTGAGAATCGGATACCTCTGCGACAGGggcaaaagaaatattttcc
tcTTCAATCTTTATCTTCAATGGTATATCATCATCTATGTTTGTATCAAC
AAATTCATGCTTTTTCTCTCCCAAGAAATCTAAAAAAGCATTCTCTGGAC
CAATCTTGATGGAAACCgaattcactttttctttgtctttgatttcatta
ctcatatcattagttt
Run BLAST on NCBI

protein sequence of TCONS_00036134-protein

>TCONS_00036134-protein ID=TCONS_00036134-protein|Name=TCONS_00036134-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp
TNDMSNEIKDKEKVNSVSIKIGPENAFLDFLGEKKHEFVDTNIDDDIPLK
IKIEEENISFAPVAEVSDSQHQSDSFHIKIELDEIIPPTNLTTDANNFQV
ENPILKTRKNNLITKERGQSFKCKECGKALKFNCDLKRHFRIHTSERPFM
CQYCGKCFAQSDGLTQHLIVHSSIKPFNCEECGKNLKTNGSLKKHIKLHT
EEKPFKCEECCKCFKTISSLKKHKIIHTEEKLFKCEECCKCFKTISSLKK
HKIIHTEEKLFKCEECGKCFKTNGSLKQHKRIHTKEKL
Run BLAST on NCBI

transcript from alignment at sc0001416:11637..12502

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036134 ID=TCONS_00036134|Name=TCONS_00036134|organism=Clytia hemisphaerica|type=transcript|length=866bp|location=Sequence derived from alignment at sc0001416:11637..12502 (Clytia hemisphaerica)
aaactaatgatatgagtaatgaaatcaaagacaaagaaaaagtgaattcG
GTTTCCATCAAGATTGGTCCAGAGAATGCTTTTTTAGATTTCTTGGGAGA
GAAAAAGCATGAATTTGTTGATACAAACATAGATGATGATATACCATTGA
AGATAAAGATTGAAgaggaaaatatttcttttgccCCTGTCGCAGAGGTA
TCCGATTCTCAGCATCAATCAGACTCTTTTCATATTAAAATTGAACTTGA
TGAAATAATTCCACCAACAAACTTAACAACAGATGCCAACAATTTTCAAG
TAGAAAATCCTATTCTCAAGACAAGGAAAAATAATCTTATCACAAAAGAA
CGTGGCCAAAGTTTTAAATGCAAAGAGTGTGGTAAAGCTCTCAAGTTCAA
CTGTGATTTGAAGAGACATTTTAGAATTCACACTAGTGAAAGACCTTTCA
TGTGTCAATAttgtggtaaatgttttgcCCAATCAGATGGTCTAACACAG
CATCTTATAGTGCATAGCAGCATTAAGCCGTTTAATTGTGAGGAATGTGG
TAAAAACCTTAAAACAAACGGTTCTTTAAAAAAGCATATTAAGTTACACA
CCGAAGAAAAGCCATTCAAATGTGAAGAATGTTgtaaatgctttaaaaca
atTAGTTCTTTAAAGAAACATAAAATAATACACACTGAAGAAAAGTTATT
TAAATGTGAAGAATGTTgtaaatgctttaaaacaatTAGTTCTTTAAAGA
AACATAAAATAATACACACTGAAGAAAAGTTATTTaaatgtgaagaatgt
ggtaaatgcttCAAAACAAATGGTTCTTTAAAGCAACATAAAAGAATACA
CACCAAAGAAAAGCTG

Coding sequence (CDS) from alignment at sc0001416:11637..12502

>TCONS_00036134 ID=TCONS_00036134|Name=TCONS_00036134|organism=Clytia hemisphaerica|type=CDS|length=864bp|location=Sequence derived from alignment at sc0001416:11637..12502 (Clytia hemisphaerica)
actaatgatatgagtaatgaaatcaaagacaaagaaaaagtgaattcGGT
TTCCATCAAGATTGGTCCAGAGAATGCTTTTTTAGATTTCTTGGGAGAGA
AAAAGCATGAATTTGTTGATACAAACATAGATGATGATATACCATTGAAG
ATAAAGATTGAAgaggaaaatatttcttttgccCCTGTCGCAGAGGTATC
CGATTCTCAGCATCAATCAGACTCTTTTCATATTAAAATTGAACTTGATG
AAATAATTCCACCAACAAACTTAACAACAGATGCCAACAATTTTCAAGTA
GAAAATCCTATTCTCAAGACAAGGAAAAATAATCTTATCACAAAAGAACG
TGGCCAAAGTTTTAAATGCAAAGAGTGTGGTAAAGCTCTCAAGTTCAACT
GTGATTTGAAGAGACATTTTAGAATTCACACTAGTGAAAGACCTTTCATG
TGTCAATAttgtggtaaatgttttgcCCAATCAGATGGTCTAACACAGCA
TCTTATAGTGCATAGCAGCATTAAGCCGTTTAATTGTGAGGAATGTGGTA
AAAACCTTAAAACAAACGGTTCTTTAAAAAAGCATATTAAGTTACACACC
GAAGAAAAGCCATTCAAATGTGAAGAATGTTgtaaatgctttaaaacaat
TAGTTCTTTAAAGAAACATAAAATAATACACACTGAAGAAAAGTTATTTA
AATGTGAAGAATGTTgtaaatgctttaaaacaatTAGTTCTTTAAAGAAA
CATAAAATAATACACACTGAAGAAAAGTTATTTaaatgtgaagaatgtgg
taaatgcttCAAAACAAATGGTTCTTTAAAGCAACATAAAAGAATACACA
CCAAAGAAAAGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021246XLOC_021246Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036134-exon-sc0001416-1491911889:11637..12502TCONS_00036134-exon-sc0001416-1491911889:11637..12502Clytia hemisphaericaexon
TCONS_00036134-exon-sc0001416-1510915933:11637..12502TCONS_00036134-exon-sc0001416-1510915933:11637..12502Clytia hemisphaericaexon
TCONS_00036134-exon-sc0001416-1575043694:11637..12502TCONS_00036134-exon-sc0001416-1575043694:11637..12502Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036134-proteinTCONS_00036134-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001416supercontigsc0001416:11637..12502 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.3862	1.57269	1.58493	1.18872	0	0.120363	0	0	0.0455044	0.0684408	0.164127	0.0620605	0.0474009	0	0	0.0376344	0.248463	0.166198	0	0.240271	0.295776	0.259858	0.861173	1.14442	0.347862	0.597801	0.0740442	0.251276	0.711013	0.831689
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00036134 vs. Swiss-Prot (Human)
Match: ZN273 (Zinc finger protein 273 OS=Homo sapiens GN=ZNF273 PE=1 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 1.307e-38
Identity = 91/169 (53.85%), Postives = 119/169 (70.41%), Query Frame = -3 
Query:    4 QSFKCKECGKALKFNCDLKRHFRIHTSERPFMCQYCGKCFAQSDGLTQHLIVHSSIKPFNCEECGKNLKTNGSLKKHIKLHTXXXXXXXXXXXXXXKTISSLKKHKIIHTXXXXXXXXXXXXXXKTISSLKKHKIIHTEEKLFKCEECGKCFKTNGSLKQHKRIHTKEK 510
            + +KC ECGKA  ++  L +H RIHT E+P+ C+ CGK F QS  LT+H IVH+  KP+ CEECGK  K + +L KH +++T+EKP+KCEEC K F   S+L KHKIIHT  K +KCEEC   F+  S+L +HK +HT EK +KC ECGK F  + +L +HKRIHT EK
Sbjct:  344 KPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNQSSTLTRHKIVHTGEKPYKCEECGKAFKRSTTLTKHKRIYTKEKPYKCEECGKAFSVFSTLTKHKIIHTGAKPYKCEECGSAFRAFSTLTEHKRVHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEK 512

HSP 2 Score: 134.806 bits (338), Expect = 1.663e-35
Identity = 91/167 (54.49%), Postives = 117/167 (70.06%), Query Frame = -3 
Query:    4 FKCKECGKALKFNCDLKRHFRIHTSERPFMCQYCGKCFAQSDGLTQHLIVHSSIKPFNCEECGKNLKTNGSLKKHIKLHTXXXXXXXXXXXXXXKTISSLKKHKIIHTXXXXXXXXXXXXXXKTISSLKKHKIIHTEEKLFKCEECGKCFKTNGSLKQHKRIHTKEK 504
            +KC+ECGKA   +  L +H +IHT E+P+ C+ CGK F+    LT+H I+H+  KP+NCEECGK      +L KH  +HT EKP+KC EC K F   S+L KHK IHT EK +KCEEC K F   S+L +HKI+HT EK +KCEECGK FK + +L +HKRI+TKEK
Sbjct:  262 YKCEECGKAFNQSLTLTKHKKIHTEEKPYKCEDCGKVFSVFSVLTKHKIIHTGTKPYNCEECGKGFSIFSTLTKHKIIHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNQSSTLTRHKIVHTGEKPYKCEECGKAFKRSTTLTKHKRIYTKEK 428

HSP 3 Score: 124.405 bits (311), Expect = 8.457e-32
Identity = 97/201 (48.26%), Postives = 123/201 (61.19%), Query Frame = -3 
Query:    4 TTDANNFQVEN--PILKTRKNNLITKERG---QSFKCKECGKALKFNCDLKRHFRIHTSERPFMCQYCGKCFAQSDGLTQHLIVHSSIKPFNCEECGKNLKTNGSLKKHIKLHTXXXXXXXXXXXXXXKTISSLKKHKIIHTXXXXXXXXXXXXXXKTISSLKKHKIIHTEEKLFKCEECGKCFKTNGSLKQHKRIHTKEK 591
            TT +  FQ +    +L    N+ I K+R    + FKCKECGK+      L +H +  T    + C+ CGK F Q   LT+H I+H  + P+ CEECGK    + +L KH K+HTEEKP+KCE+C K F   S L KHKIIHT  K + CEEC K F   S+L KHKIIHT EK +KC ECGK F  + +L +HKRIHT EK
Sbjct:  172 TTQSKIFQCDKYVKVLHKFSNSNIHKKRQTGKKPFKCKECGKSCCILSQLTQHKKTATRVNFYKCKTCGKAFNQFSNLTKHKIIHPEVNPYKCEECGKAFNQSLTLTKHKKIHTEEKPYKCEDCGKVFSVFSVLTKHKIIHTGTKPYNCEECGKGFSIFSTLTKHKIIHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEK 372

HSP 4 Score: 110.923 bits (276), Expect = 4.424e-27
Identity = 80/169 (47.34%), Postives = 108/169 (63.91%), Query Frame = -3 
Query:    4 QSFKCKECGKALKFNCDLKRHFRIHTSERPFMCQYCGKCFAQSDGLTQHLIVHSSIKPFNCEECGKNLKTNGSLKKHIKLHTXXXXXXXXXXXXXXKTISSLKKHKIIHTXXXXXXXXXXXXXXKTISSLKKHKIIHTEEKLFKCEECGKCFKTNGSLKQHKRIHTKEK 510
            + +KC+ECGKA K +  L +H RI+T E+P+ C+ CGK F+    LT+H I+H+  KP+ CEECG   +   +L +H ++HT EKP+KC EC K F   S+L KHK IHT EK +KCEEC K F   S+L +HK IHT EK +K + C   F    +  +HKR H  EK
Sbjct:  400 KPYKCEECGKAFKRSTTLTKHKRIYTKEKPYKCEECGKAFSVFSTLTKHKIIHTGAKPYKCEECGSAFRAFSTLTEHKRVHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNRSSNLTRHKKIHTGEKPYKPKRCDSAFDNTPNFSRHKRNHMGEK 568

HSP 5 Score: 81.2629 bits (199), Expect = 3.840e-17
Identity = 38/97 (39.18%), Postives = 55/97 (56.70%), Query Frame = -3 
Query:  265 ILKTRKNNLITKERGQSFKCKECGKALKFNCDLKRHFRIHTSERPFMCQYCGKCFAQSDGLTQHLIVHSSIKPFNCEECGKNLKTNGSLKKHIKLHT 555
            +  T   + I     + +KC+ECG A +    L  H R+HT E+P+ C  CGK F  S  LT+H  +H+  KP+ CEECGK    + +L +H K+HT
Sbjct:  441 VFSTLTKHKIIHTGAKPYKCEECGSAFRAFSTLTEHKRVHTGEKPYKCNECGKAFNWSSTLTKHKRIHTGEKPYKCEECGKAFNRSSNLTRHKKIHT 537
The following BLAST results are available for this feature:
BLAST of TCONS_00036134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN2731.307e-3853.85Zinc finger protein 273 OS=Homo sapiens GN=ZNF273 ... [more]
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