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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036130 ID=TCONS_00036130|Name=TCONS_00036130|organism=Clytia hemisphaerica|type=transcript|length=2336bp
TATCACTATCATGATTTAACATTTCACACTTTATAACACTAAACTTTCTA
TTTGCCACAACAGAATGACAACCTACTCATTTTAAACATTGAAGTCTGCT
GGGACATATAACATTTCATTTCCCTCTAATCttactaaattttaaaattt
tctttatctCTTCCAATATTTCAAATATTCCCAAACCACAAACTCTGGTC
CTTCTGTTTAAAATACATCCTTCTATCGCTATTATATATCCATTCAACCC
ATATGTGAGGATATGGTGGCAACTTCCTACTTGTTCCTCCACACTCAAGT
TAGTTTTTGACACCACTTTTGGTTCATCCAATCACTTTTCAACCTGGTCC
TCCACATCCAAGTTAGCTTTTGATATCACTTTTGTTTACTCAGCCACCTT
TCAACTTACTCTTCTACATCCTCTAAATCCAGGCTAGTTTTTGACATCAC
TTTCTGTTCATTCAGCCACCATGCAAAGACCAAAAAACTACCACCCAAGA
AGATATCATTTCCCTAACCTATTTCCACACTCTCATCACTGGCATCACCA
TAATCCAGAAAATCCCATCAGAAAATCGATCATCTAGGAACACACCAACA
CCTTCAACAACACCCTAATACACAACCTCTCCACCTACCAACtctcaaaa
tatgaaatcaACATCTTGGCCAAAGGACTCAACTTCTCACCCAATATTCC
ATCATTCAAAAGACAGTCAAATCCAACAGAGGTTATTAAAGgcttgaaaa
gaagaattgaCACCTCCCTATACTTCAACCAACTTAACCTAATGAGCCAA
ATCAATAACGCCCACCAAGAAAACCAAGACCAACAACCACCCGCAAAACT
ACCAAAAAAGGCCCTACCGCATGGAATCCCCCTCTCAGCAACCACCCAAC
TGTCAACAATTTTTTCCAACAACTCGATAATACGCCTCTGGTCCCATTCG
AACAAGACCGTCATGCTGAGCACTACCATTTCCTcctatcttttttcaaa
ttaaaaaataaccgGGACCTCATAATAAAGAAGGCCGACATAAGTGGTGG
CATAGTCGTCATGGATAAAGATCAATACATCAACAAGATTCTTGAAGAGC
ACCTCAACGACAGAAACACGTATAGTATATCTGAATTCGATCCAACACCC
CACATCACACATGACACCAAAAATACTTATCAACTTCCTTCATAGTAAAC
ATCACATCAACGACCACActgccaaatatctcaaacctcATGATCCATCA
CGCACACCCATGTTCTATGGCTTACCAAAAATACATAAGGTATTTGTCTC
TGGCTTTGATGGTCCCACCGACAACATTTCCCGCTACATTGCCCTTCCAT
CTACAGCCACTTGTTGAACACCTACCTTCACAcataaaaaacacaaaaca
taTGCTCACTATCCTCGATTCATTCGGCCCACTACCTTCCAATATCACCA
TAATTGCTGCCGACGTCATCTCGTTATATACCAACATACCTGATGGTGAT
GGACTGGAAGCCACCTCCCGACATTACAAACAATCTCCGCACCTGCTTCA
CCCAAATGCACCTTCCCCTTTTGCCATCAAAGTACTACTCGAACACGTTT
TGAAACACAGCAATTTCCAGTTTTTGAATTCCCATTACATACAAAACAAT
GGTACCAGCATGGGAGGACGATACGCACCCAAATATGAAAAGTTATTCAT
GGCTGATGTTGAAGCAGCAATACATCACGCACACACATTCCTACCGTCTA
CAATCAATTTGGCGGAAGCACAAgacgaaaactttttaaacgtTACCGAC
CTGGTAGTAGAAATATctgcaaacaaacaaaaaccaTCAGTACCTTTTCT
TGCAAGCTTAGATATATTATACCGTACTCCAAAAGATGACCTGACAAAAC
TTCTcgaatcctactttgacaatgaAACAATCTACACACTCAAAGACCAA
CTCTTTCACATGTTTATGGACAAATTTGACACAGTAACTCTCTCCAACCA
TGGCTTCAACAAAGTAGTCAACTCCACAAAAAGTCTCACCCAACACCTCA
AACAGAGACAGAAGTCAGAGACAACAGTAAATGACATCTACATCATTGGA
CTAAGTTTAGCAGAGAAAACTATTGTAAACAGACTTGCCCATGACATCCT
TAAACCGTCCAGCGTCACTACCGCCAACAACCAGAAACTCAATTCCAAAA
CGTGGTTGAAACAAATAGCAAAGAACTACTTTAACAAATTGCAAAGTTAA
CAAAAACAGCGGAAGTTGTTGAAAAAGATAATAAGGAACTAAAAAGCTAT
GTTATTGAACTTATACAGAAAATGGATCAACACTTC Run BLAST on NCBI protein sequence of TCONS_00036130-protein >TCONS_00036130-protein ID=TCONS_00036130-protein|Name=TCONS_00036130-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp
MIHHAHPCSMAYQKYIRYLSLALMVPPTTFPATLPFHLQPLVEHLPSHIK
NTKHMLTILDSFGPLPSNITIIAADVISLYTNIPDGDGLEATSRHYKQSP
HLLHPNAPSPFAIKVLLEHVLKHSNFQFLNSHYIQNNGTSMGGRYAPKYE
KLFMADVEAAIHHAHTFLPSTINLAEAQDENFLNVTDLVVEISANKQKPS
VPFLASLDILYRTPKDDLTKLLESYFDNETIYTLKDQLFHMFMDKFDTVT
LSNHGFNKVVNSTKSLTQHLKQRQKSETTVNDIYIIGLSLAEKTIVNRLA
HDILKPSSVTTANNQKLNSKTWLKQIAKNYFNKLQS Run BLAST on NCBI transcript from alignment at sc0001415:23685..26020 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036130 ID=TCONS_00036130|Name=TCONS_00036130|organism=Clytia hemisphaerica|type=transcript|length=2336bp|location=Sequence derived from alignment at sc0001415:23685..26020 (Clytia hemisphaerica)
GAAGTGTTGATCCATTTTCTGTATAAGTTCAATAACATAGCTTTTTAGTT
CCTTATTATCTTTTTCAACAACTTCCGCTGTTTTTGTTAACTTTGCAATT
TGTTAAAGTAGTTCTTTGCTATTTGTTTCAACCACGTTTTGGAATTGAGT
TTCTGGTTGTTGGCGGTAGTGACGCTGGACGGTTTAAGGATGTCATGGGC
AAGTCTGTTTACAATAGTTTTCTCTGCTAAACTTAGTCCAATGATGTAGA
TGTCATTTACTGTTGTCTCTGACTTCTGTCTCTGTTTGAGGTGTTGGGTG
AGACTTTTTGTGGAGTTGACTACTTTGTTGAAGCCATGGTTGGAGAGAGT
TACTGTGTCAAATTTGTCCATAAACATGTGAAAGAGTTGGTCTTTGAGTG
TGTAGATTGTTtcattgtcaaagtaggattcgAGAAGTTTTGTCAGGTCA
TCTTTTGGAGTACGGTATAATATATCTAAGCTTGCAAGAAAAGGTACTGA
tggtttttgtttgtttgcagATATTTCTACTACCAGGTCGGTAacgttta
aaaagttttcgtcTTGTGCTTCCGCCAAATTGATTGTAGACGGTAGGAAT
GTGTGTGCGTGATGTATTGCTGCTTCAACATCAGCCATGAATAACTTTTC
ATATTTGGGTGCGTATCGTCCTCCCATGCTGGTACCATTGTTTTGTATGT
AATGGGAATTCAAAAACTGGAAATTGCTGTGTTTCAAAACGTGTTCGAGT
AGTACTTTGATGGCAAAAGGGGAAGGTGCATTTGGGTGAAGCAGGTGCGG
AGATTGTTTGTAATGTCGGGAGGTGGCTTCCAGTCCATCACCATCAGGTA
TGTTGGTATATAACGAGATGACGTCGGCAGCAATTATGGTGATATTGGAA
GGTAGTGGGCCGAATGAATCGAGGATAGTGAGCAtatgttttgtgttttt
tatgTGTGAAGGTAGGTGTTCAACAAGTGGCTGTAGATGGAAGGGCAATG
TAGCGGGAAATGTTGTCGGTGGGACCATCAAAGCCAGAGACAAATACCTT
ATGTATTTTTGGTAAGCCATAGAACATGGGTGTGCGTGATGGATCATgag
gtttgagatatttggcagTGTGGTCGTTGATGTGATGTTTACTATGAAGG
AAGTTGATAAGTATTTTTGGTGTCATGTGTGATGTGGGGTGTTGGATCGA
ATTCAGATATACTATACGTGTTTCTGTCGTTGAGGTGCTCTTCAAGAATC
TTGTTGATGTATTGATCTTTATCCATGACGACTATGCCACCACTTATGTC
GGCCTTCTTTATTATGAGGTCCcggttattttttaatttgaaaaaagata
ggAGGAAATGGTAGTGCTCAGCATGACGGTCTTGTTCGAATGGGACCAGA
GGCGTATTATCGAGTTGTTGGAAAAAATTGTTGACAGTTGGGTGGTTGCT
GAGAGGGGGATTCCATGCGGTAGGGCCTTTTTTGGTAGTTTTGCGGGTGG
TTGTTGGTCTTGGTTTTCTTGGTGGGCGTTATTGATTTGGCTCATTAGGT
TAAGTTGGTTGAAGTATAGGGAGGTGtcaattcttcttttcaagcCTTTA
ATAACCTCTGTTGGATTTGACTGTCTTTTGAATGATGGAATATTGGGTGA
GAAGTTGAGTCCTTTGGCCAAGATGTtgatttcatattttgagaGTTGGT
AGGTGGAGAGGTTGTGTATTAGGGTGTTGTTGAAGGTGTTGGTGTGTTCC
TAGATGATCGATTTTCTGATGGGATTTTCTGGATTATGGTGATGCCAGTG
ATGAGAGTGTGGAAATAGGTTAGGGAAATGATATCTTCTTGGGTGGTAGT
TTTTTGGTCTTTGCATGGTGGCTGAATGAACAGAAAGTGATGTCAAAAAC
TAGCCTGGATTTAGAGGATGTAGAAGAGTAAGTTGAAAGGTGGCTGAGTA
AACAAAAGTGATATCAAAAGCTAACTTGGATGTGGAGGACCAGGTTGAAA
AGTGATTGGATGAACCAAAAGTGGTGTCAAAAACTAACTTGAGTGTGGAG
GAACAAGTAGGAAGTTGCCACCATATCCTCACATATGGGTTGAATGGATA
TATAATAGCGATAGAAGGATGTATTTTAAACAGAAGGACCAGAGTTTGTG
GTTTGGGAATATTTGAAATATTGGAAGagataaagaaaattttaaaattt
agtaaGATTAGAGGGAAATGAAATGTTATATGTCCCAGCAGACTTCAATG
TTTAAAATGAGTAGGTTGTCATTCTGTTGTGGCAAATAGAAAGTTTAGTG
TTATAAAGTGTGAAATGTTAAATCATGATAGTGATA Coding sequence (CDS) from alignment at sc0001415:23685..26020 >TCONS_00036130 ID=TCONS_00036130|Name=TCONS_00036130|organism=Clytia hemisphaerica|type=CDS|length=1011bp|location=Sequence derived from alignment at sc0001415:23685..26020 (Clytia hemisphaerica)
TTAACTTTGCAATTTGTTAAAGTAGTTCTTTGCTATTTGTTTCAACCACG
TTTTGGAATTGAGTTTCTGGTTGTTGGCGGTAGTGACGCTGGACGGTTTA
AGGATGTCATGGGCAAGTCTGTTTACAATAGTTTTCTCTGCTAAACTTAG
TCCAATGATGTAGATGTCATTTACTGTTGTCTCTGACTTCTGTCTCTGTT
TGAGGTGTTGGGTGAGACTTTTTGTGGAGTTGACTACTTTGTTGAAGCCA
TGGTTGGAGAGAGTTACTGTGTCAAATTTGTCCATAAACATGTGAAAGAG
TTGGTCTTTGAGTGTGTAGATTGTTtcattgtcaaagtaggattcgAGAA
GTTTTGTCAGGTCATCTTTTGGAGTACGGTATAATATATCTAAGCTTGCA
AGAAAAGGTACTGAtggtttttgtttgtttgcagATATTTCTACTACCAG
GTCGGTAacgtttaaaaagttttcgtcTTGTGCTTCCGCCAAATTGATTG
TAGACGGTAGGAATGTGTGTGCGTGATGTATTGCTGCTTCAACATCAGCC
ATGAATAACTTTTCATATTTGGGTGCGTATCGTCCTCCCATGCTGGTACC
ATTGTTTTGTATGTAATGGGAATTCAAAAACTGGAAATTGCTGTGTTTCA
AAACGTGTTCGAGTAGTACTTTGATGGCAAAAGGGGAAGGTGCATTTGGG
TGAAGCAGGTGCGGAGATTGTTTGTAATGTCGGGAGGTGGCTTCCAGTCC
ATCACCATCAGGTATGTTGGTATATAACGAGATGACGTCGGCAGCAATTA
TGGTGATATTGGAAGGTAGTGGGCCGAATGAATCGAGGATAGTGAGCAta
tgttttgtgttttttatgTGTGAAGGTAGGTGTTCAACAAGTGGCTGTAG
ATGGAAGGGCAATGTAGCGGGAAATGTTGTCGGTGGGACCATCAAAGCCA
GAGACAAATACCTTATGTATTTTTGGTAAGCCATAGAACATGGGTGTGCG
TGATGGATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036130-exon-sc0001415-1491911889:23685..26020 | TCONS_00036130-exon-sc0001415-1491911889:23685..26020 | Clytia hemisphaerica | exon |
| TCONS_00036130-exon-sc0001415-1510915933:23685..26020 | TCONS_00036130-exon-sc0001415-1510915933:23685..26020 | Clytia hemisphaerica | exon |
| TCONS_00036130-exon-sc0001415-1575043694:23685..26020 | TCONS_00036130-exon-sc0001415-1575043694:23685..26020 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001415 | supercontig | sc0001415:23685..26020 . |
Blast
The following BLAST results are available for this feature:
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