TCONS_00036126 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036126
Unique NameTCONS_00036126
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1611

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036126 ID=TCONS_00036126|Name=TCONS_00036126|organism=Clytia hemisphaerica|type=transcript|length=1611bp
CACTTGATGGGTTAGAAAAATATTAACCCCTACTCATACGGAAACAGTGC
TTGtaggtttttgaaatttatgtTTCACTGGGTGTAGCCCGTGTATTATC
TAAGCACCACTTACTCTTCTTTTAAGGTTCCTGCTGTGTTAAGAAGTATT
CACAACAACATTGATGTTGCAGGTCGACTTCAAAGTTGTAATTCTGGTGG
TCAAgccaaattattaaaaattaccATTTCTATGGAATCAGAAAATGTGT
TGAAGAATTCTTGTCCAGCTGTCCAACATGCCAAGCAACCATGCAGCTGC
CACAGGTGAAAGCACCCCCAATTCCCATCCGTACACATTTCCCTCATCAA
AAACTCCAAATGGATTTGATTCAGATggcttcaaaaaagaaacaacACAT
GATTTTGAATCCCTGGCGGTTTTCTTACATCCTTTCCGTCAAGTGCTGCT
TCTCAAAGTATGGTTGGCTTTTCCCTTTGAGAAATAATTGATGGGGTTTA
CTTAGCTGTCAAGCTGCTATGTGAGAAGGAAGGGTTTCCTGAGTATATGC
AAAGTGACAATGGCAAAGAATTTGTCAGCAATATCatcaaagaatttttt
gaaagtcgaGAAGTCAGAATCAAACACGGTAGACCCAGACATCCACAAAG
TCAAGGGCAAGTGGAAAACCTCAACAAACGGTCAAACATCAATTGAGGCG
AATCCTGAGTGTCTTACCTGGAAAGGAAGAGCAAGGAAAGCTTTGGCCAC
TTCTTCTTCCAGGAATTGCTTCGAATTGTAATAATGTGTACCATCACACC
ATCAATGATGTACCCTTCCGTGTGTACCACAATCGAGAGCCTGGACAACT
TAAACACTGTGTTGCTCCAGAAGACTATGACTGGTGTATGCAGGCTGGTA
TTAAATCAAAGACCAGTGGAGGAAGTGACGAACACTATGATGAAgacgat
gaagaagaagaagatatgCCTGAAGAGGAAGTTCCACCCGTGAGCTCAGA
AGAACAGATGATGTCATTGAGTGACCTGCTTCAATCTTGTGCTAGTGCCT
CCatctcaagtgatttcctgtcTCAAAGACAAAATCAACAAACAGAGTCC
AACTTTGATGATACAGATTTATGCTCCACAGATAACTTTGAGACAGTGAA
TTTTCAATCTTGCCTTTATTCGTTGGCAAAGATTTCTGAATGGTTATGTT
ATTCTGCTTTAGAAAATACTGAATATACATGCAATTCACCGTAATTTTAA
ACAATCCATGAAATCGCACAAGAACAGCATTTTCAAAATAGGACATCGTG
TGCTCTTTCGAAACCCCAATCTGAATAAATACACttacaaaacattttca
tttgatAAGCTGAACATTGTTGGTACTGTAAAAGAAGTAAGCGGACATAT
GTATAAGGTGGAGGTTCAAGAAGGAGAATCAAAATGTGTCAAGTCGGTGT
TTAAGGGGGAAACGGTACCTTTGTCAGATGGAGATGAAGGTAATGGAGAA
GAGGAAGAGAATGATCatagcaacaacaacaacaacaacaatttttcttt
aaccagTGTCTTGAATTCAATCACAGATGTTGGTGCAAAAACACGGGAGT
CCATTTACAAT
Run BLAST on NCBI

protein sequence of TCONS_00036126-protein

>TCONS_00036126-protein ID=TCONS_00036126-protein|Name=TCONS_00036126-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MQAGIKSKTSGGSDEHYDEDDEEEEDMPEEEVPPVSSEEQMMSLSDLLQS
CASASISSDFLSQRQNQQTESNFDDTDLCSTDNFETVNFQSCLYSLAKIS
EWLCYSALENTEYTCNSP
Run BLAST on NCBI

transcript from alignment at sc0001415:30025..31821-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036126 ID=TCONS_00036126|Name=TCONS_00036126|organism=Clytia hemisphaerica|type=transcript|length=1797bp|location=Sequence derived from alignment at sc0001415:30025..31821- (Clytia hemisphaerica)
CACTTGATGGGTTAGAAAAATATTAACCCCTACTCATACGGAAACAGTGC
TTGTAGGTTTTTGAAATTTATGTTTCACTGGGTGTAGCCCGTGTATTATC
TAAGCACCACTTACTCTTCTTTTAAGGTTCCTGCTGTGTTAAGAAGTATT
CACAACAACATTGATGTTGCAGGTCGACTTCAAAGTTGTAATTCTGGTGG
TCAAGCCAAATTATTAAAAATTACCATTTCTATGGAATCAGAAAATGTGT
TGAAGAATTCTTGTCCAGCTGTCCAACATGCCAAGCAACCATGCAGCTGC
CACAGGTGAAAGCACCCCCAATTCCCATCCGTACACATTTCCCTCATCAA
AAACTCCAAATGGATTTGATTCAGATGGCTTCAAAAAAGAAACAACACAT
GATTTTGAATCCCTGGCGGTTTTCTTACATCCTTTCCGTCAAGTGCTGCT
TCTCAAAGTATGGTTGGCTTTTCCCTTTGAGAAATAATTGATGGGGTTTA
CTTAGCTGTCAAGCTGCTATGTGAGAAGGAAGGGTTTCCTGAGTATATGC
AAAGTGACAATGGCAAAGAATTTGTCAGCAATATCATCAAAGAATTTTTT
GAAAGTCGAGAAGTCAGAATCAAACACGGTAGACCCAGACATCCACAAAG
TCAAGGGCAAGTGGAAAACCTCAACAAACGGTCAAACATCAATTGAGGCG
AATCCTGAGTGTCTTACCTGGAAAGGAAGAGCAAGGAAAGCTTTGGCCAC
TTCTTCTTCCAGGAATTGCTTCGAATTGTAATAATGTGTACCATCACACC
ATCAATGATGTACCCTTCCGTGTGTACCACAATCGAGAGCCTGGACAACT
TAAACACTGTGTTGCTCCAGAAGACTATGACTGGTGTATGCAGGCTGGTA
TTAAATCAAAGTGATTAATTTTAATTTATTTGAATCATTTTGTTTTATGC
AGGATATAGGATATAGTCGTCTCCATTCAGCGTTATAATCAAATGAGTAG
ATAATTTGTTGAATCAAAAGTAATGAACATTTCAAAAAATGTCAAATAGG
TCAAGAAATATGGTTATTTTTTATTAAATAATTTTTTCTATTCCAGGACC
AGTGGAGGAAGTGACGAACACTATGATGAAGACGATGAAGAAGAAGAAGA
TATGCCTGAAGAGGAAGTTCCACCCGTGAGCTCAGAAGAACAGATGATGT
CATTGAGTGACCTGCTTCAATCTTGTGCTAGTGCCTCCATCTCAAGTGAT
TTCCTGTCTCAAAGACAAAATCAACAAACAGAGTCCAACTTTGATGATAC
AGATTTATGCTCCACAGATAACTTTGAGACAGTGAATTTTCAATCTTGCC
TTTATTCGTTGGCAAAGATTTCTGAATGGTTATGTTATTCTGCTTTAGAA
AATACTGAATATACATGCAATTCACCGTAATTTTAAACAATCCATGAAAT
CGCACAAGAACAGCATTTTCAAAATAGGACATCGTGTGCTCTTTCGAAAC
CCCAATCTGAATAAATACACTTACAAAACATTTTCATTTGATAAGCTGAA
CATTGTTGGTACTGTAAAAGAAGTAAGCGGACATATGTATAAGGTGGAGG
TTCAAGAAGGAGAATCAAAATGTGTCAAGTCGGTGTTTAAGGGGGAAACG
GTACCTTTGTCAGATGGAGATGAAGGTAATGGAGAAGAGGAAGAGAATGA
TCATAGCAACAACAACAACAACAACAATTTTTCTTTAACCAGTGTCTTGA
ATTCAATCACAGATGTTGGTGCAAAAACACGGGAGTCCATTTACAAT

Coding sequence (CDS) from alignment at sc0001415:30025..31821-

>TCONS_00036126 ID=TCONS_00036126|Name=TCONS_00036126|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at sc0001415:30025..31821- (Clytia hemisphaerica)
GACCAGTGGAGGAAGTGACGAACACTATGATGAAGACGATGAAGAAGAAG
AAGATATGCCTGAAGAGGAAGTTCCACCCGTGAGCTCAGAAGAACAGATG
ATGTCATTGAGTGACCTGCTTCAATCTTGTGCTAGTGCCTCCATCTCAAG
TGATTTCCTGTCTCAAAGACAAAATCAACAAACAGAGTCCAACTTTGATG
ATACAGATTTATGCTCCACAGATAACTTTGAGACAGTGAATTTTCAATCT
TGCCTTTATTCGTTGGCAAAGATTTCTGAATGGTTATGTTATTCTGCTTT
AGAAAATACTGAATATACATGCAATTCACCGTAAATGCAGGCTGGTATTA
AATCAAAGACCAGTGGAGGAAGTGACGAACACTATGATGAAGACGATGAA
GAAGAAGAAGATATGCCTGAAGAGGAAGTTCCACCCGTGAGCTCAGAAGA
ACAGATGATGTCATTGAGTGACCTGCTTCAATCTTGTGCTAGTGCCTCCA
TCTCAAGTGATTTCCTGTCTCAAAGACAAAATCAACAAACAGAGTCCAAC
TTTGATGATACAGATTTATGCTCCACAGATAACTTTGAGACAGTGAATTT
TCAATCTTGCCTTTATTCGTTGGCAAAGATTTCTGAATGGTTATGTTATT
CTGCTTTAGAAAATACTGAATATACATGCAATTCACCGTAAATGCAGGCT
GGTATTAAATCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021240XLOC_021240Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036126-proteinTCONS_00036126-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036126-exon-sc0001415-1575043694:30912..31821TCONS_00036126-exon-sc0001415-1575043694:30912..31821Clytia hemisphaericaexon
TCONS_00036126-exon-sc0001415-1575043694:30025..30725TCONS_00036126-exon-sc0001415-1575043694:30025..30725Clytia hemisphaericaexon
TCONS_00036126-exon-sc0001415-1510915933:30912..31821TCONS_00036126-exon-sc0001415-1510915933:30912..31821Clytia hemisphaericaexon
TCONS_00036126-exon-sc0001415-1510915933:30025..30725TCONS_00036126-exon-sc0001415-1510915933:30025..30725Clytia hemisphaericaexon
TCONS_00036126-exon-sc0001415-1491911889:30912..31821TCONS_00036126-exon-sc0001415-1491911889:30912..31821Clytia hemisphaericaexon
TCONS_00036126-exon-sc0001415-1491911889:30025..30725TCONS_00036126-exon-sc0001415-1491911889:30025..30725Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001415supercontigsc0001415:30025..31821 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.73749	3.19244	1.20023	0.839077	2.84189	2.00155	4.40453	4.12457	3.05348	3.25727	4.65028	4.03971	3.4482	3.35004	5.14899	7.30119	5.97484	6.31877	6.03482	5.83026	7.07469	7.12357	3.37442	3.95537	5.44025	4.41506	4.00362	1.68367	1.275	1.08137
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036126 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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