TCONS_00036121 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036121
Unique NameTCONS_00036121
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length696

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036121 ID=TCONS_00036121|Name=TCONS_00036121|organism=Clytia hemisphaerica|type=transcript|length=696bp
gaaaatatttgtgATGCATCAAAGGAGGTTATTTCTTACACTGCAAAATC
TTTCCCGTTTCGTCAGGAAAATAAAGAGTTGCctttttatgaaaacttga
ttttttcacgccattttcaaaattacaaaactgttacAACTGTTAACTTA
CCTACTAAGCATGATTCGCTTGAGACTCTATTGGTAGAAACCTTCAAAGT
TATTCATAACCAAAGTAGAGAAATGAAAGAATGCATCCGAAGGGCAACAG
AGACATCATCCAACATCTTTCTTCCAAAACTAAAAGCATTTTTGTGTTCT
TCTTTTGTCCCTGTGCCAGTTGGAAATGTTGCTGCCTCAACGCTTGAATA
TTTAACAGAAGGTGATAGATTTCCTCAATTTACTCATTTAAATGATCCAA
AGtccaaaactttaaaccttAATTTTAAATGTGAGATTTGTGAAATTTAt
tatgagattttgaaaatttctgggaAACGAGTCACAATGAAAGGTATGGG
TAAACTTTCTGGCTTTCGTCAGATTTATGAGCATAGTATTACAAACCATC
ATAAAACTGCTTTAAACTGGTTAGTTAAACAAAATGAAACTTCCAGTCTC
GAAATAAGTTCTATGAAAGatgacccaactttgaaaaagttttacaaAGA
AACATTAAATGGGAAGATTTCTAAACAACCCTGCTTTCATATTTGG
Run BLAST on NCBI

protein sequence of TCONS_00036121-protein

>TCONS_00036121-protein ID=TCONS_00036121-protein|Name=TCONS_00036121-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
ENICDASKEVISYTAKSFPFRQENKELPFYENLIFSRHFQNYKTVTTVNL
PTKHDSLETLLVETFKVIHNQSREMKECIRRATETSSNIFLPKLKAFLCS
SFVPVPVGNVAASTLEYLTEGDRFPQFTHLNDPKSKTLNLNFKCEICEIY
YEILKISGKRVTMKGMGKLSGFRQIYEHSITNHHKTALNWLVKQNETSSL
EISSMKDDPTLKKFYKETLNGKISKQPCFHIW
Run BLAST on NCBI

transcript from alignment at sc0001414:62104..62799

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036121 ID=TCONS_00036121|Name=TCONS_00036121|organism=Clytia hemisphaerica|type=transcript|length=696bp|location=Sequence derived from alignment at sc0001414:62104..62799 (Clytia hemisphaerica)
CCAAATATGAAAGCAGGGTTGTTTAGAAATCTTCCCATTTAATGTTTCTt
tgtaaaactttttcaaagttgggtcatCTTTCATAGAACTTATTTCGAGA
CTGGAAGTTTCATTTTGTTTAACTAACCAGTTTAAAGCAGTTTTATGATG
GTTTGTAATACTATGCTCATAAATCTGACGAAAGCCAGAAAGTTTACCCA
TACCTTTCATTGTGACTCGTTtcccagaaattttcaaaatctcataaTAA
ATTTCACAAATCTCACATTTAAAATTaaggtttaaagttttggaCTTTGG
ATCATTTAAATGAGTAAATTGAGGAAATCTATCACCTTCTGTTAAATATT
CAAGCGTTGAGGCAGCAACATTTCCAACTGGCACAGGGACAAAAGAAGAA
CACAAAAATGCTTTTAGTTTTGGAAGAAAGATGTTGGATGATGTCTCTGT
TGCCCTTCGGATGCATTCTTTCATTTCTCTACTTTGGTTATGAATAACTT
TGAAGGTTTCTACCAATAGAGTCTCAAGCGAATCATGCTTAGTAGGTAAG
TTAACAGTTgtaacagttttgtaattttgaaaatggcgtgaaaaaatcaa
gttttcataaaaagGCAACTCTTTATTTTCCTGACGAAACGGGAAAGATT
TTGCAGTGTAAGAAATAACCTCCTTTGATGCATcacaaatattttc

Coding sequence (CDS) from alignment at sc0001414:62104..62799

>TCONS_00036121 ID=TCONS_00036121|Name=TCONS_00036121|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0001414:62104..62799 (Clytia hemisphaerica)
CCAAATATGAAAGCAGGGTTGTTTAGAAATCTTCCCATTTAATGTTTCTt
tgtaaaactttttcaaagttgggtcatCTTTCATAGAACTTATTTCGAGA
CTGGAAGTTTCATTTTGTTTAACTAACCAGTTTAAAGCAGTTTTATGATG
GTTTGTAATACTATGCTCATAAATCTGACGAAAGCCAGAAAGTTTACCCA
TACCTTTCATTGTGACTCGTTtcccagaaattttcaaaatctcataaTAA
ATTTCACAAATCTCACATTTAAAATTaaggtttaaagttttggaCTTTGG
ATCATTTAAATGAGTAAATTGAGGAAATCTATCACCTTCTGTTAAATATT
CAAGCGTTGAGGCAGCAACATTTCCAACTGGCACAGGGACAAAAGAAGAA
CACAAAAATGCTTTTAGTTTTGGAAGAAAGATGTTGGATGATGTCTCTGT
TGCCCTTCGGATGCATTCTTTCATTTCTCTACTTTGGTTATGAATAACTT
TGAAGGTTTCTACCAATAGAGTCTCAAGCGAATCATGCTTAGTAGGTAAG
TTAACAGTTgtaacagttttgtaattttgaaaatggcgtgaaaaaatcaa
gttttcataaaaagGCAACTCTTTATTTTCCTGACGAAACGGGAAAGATT
TTGCAGTGTAAGAAATAACCTCCTTTGATGCATcacaaatattttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021236XLOC_021236Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036121-exon-sc0001414-1491911889:62104..62799TCONS_00036121-exon-sc0001414-1491911889:62104..62799Clytia hemisphaericaexon
TCONS_00036121-exon-sc0001414-1510915933:62104..62799TCONS_00036121-exon-sc0001414-1510915933:62104..62799Clytia hemisphaericaexon
TCONS_00036121-exon-sc0001414-1575043694:62104..62799TCONS_00036121-exon-sc0001414-1575043694:62104..62799Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036121-proteinTCONS_00036121-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001414supercontigsc0001414:62104..62799 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0728496	0.284159	0.082484	0.161395	0.392967	0.0776319	0.655617	0.438415	0.0613889	0.608321	0	0.291104	0.24225	0.402526	0.165466	0.133177	0.382815	0.112107	0	0.243108	0.211305	0.103067	0.167056	0.075939	0.156431	0.558443	0	0	0.0808573	0.247143
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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