TCONS_00036106 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036106
Unique NameTCONS_00036106
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length994

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036106 ID=TCONS_00036106|Name=TCONS_00036106|organism=Clytia hemisphaerica|type=transcript|length=994bp
GGgttttcgatagaaattttacATCCTAGTTGTAGGAAAAGTTttcacca
gggctgtgagacagggatgtaatatgTTGGTTTTTATACCAATACTCCAT
ACTAACATTCGGAATTAATACACCCTCCTAAAATTCGATTCAAAATCTAT
AAACATTGAAAAAGGTCCATGGGATTTTGTGAATAATATATCTTAATGAC
TGTTTTTAGTAAACCCTATGAACTGAAGCATGTCTTCGGACATCAACTTT
CCGGTAAAAAGCTTTCCCGCATACACCACAAGAATACGGACGGATTCCGG
TATGACGTCTTTGATGAGTCAGCATATTCGAAGATTGTGAAAAGCGTTTA
CCACAAACGTTACACTGGTACGGTTTTGATCCAGAATGTGTGACCATGTG
TTTACCGAGGTCAGACTTACGAAGAAAACTCATATTGCATTGGTTGCATT
TGTATGATTTGGAGTTCTTATGGATTAATCGGTGATTCGATAAACTACTC
GATCTTTGGAACCATTTAAGACAATATTCACATTGGTGCTTTTTTATCTC
TTCTGAGGAGGTCACGTGCCAAGGTGGTAGATAGCTCAATCCTGAAGGGG
GTAGGATACCTCCATATCTTTTCGTTGATGGTAATGCTTCAACGTGATGG
TCACTGCTTTTTTGTTGATGTTGCCCGGAAGGGGATGGTATCATTTCTTC
CTCGTGGTGGTAGCTCGAAGCAGGCGAGAGGGAACCTGCTACCATATGGT
TGTAGCTATGTGCGGATAGGGTGGATCTTGGTAAATCTCTGTGATAGTTA
GATTCAGCTGAGATCGGGCCTAATCCATCCTGACTGGAGCTAGACCGAGA
GAAGAACGGGCTTGATCCCTCATGATGGCAGCTAGATGCAGGTGAGAGAG
AATCGATGTCCCCATGGTCTTTATCACAGCACGATGATACCAACATTGTT
GGAGGGGACATTCCTGAATGGAAGGGTGTCAGGATTTGAATCTC
Run BLAST on NCBI

protein sequence of TCONS_00036106-protein

>TCONS_00036106-protein ID=TCONS_00036106-protein|Name=TCONS_00036106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
EIQILTPFHSGMSPPTMLVSSCCDKDHGDIDSLSPASSCHHEGSSPFFSR
SSSSQDGLGPISAESNYHRDLPRSTLSAHSYNHMVAGSLSPASSYHHEEE
MIPSPSGQHQQKSSDHHVEALPSTKRYGGILPPSGLSYLPPWHVTSSEEI
KKHQCEYCLKWFQRSSSLSNHRLIHKNSKSYKCNQCNMSFLRKSDLGKHM
VTHSGSKPYQCNVCGKRFSQSSNMLTHQRRHTGIRPYSCGVCGKAFYRKV
DVRRHASVHRVY
Run BLAST on NCBI

transcript from alignment at sc0001413:52281..53274

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036106 ID=TCONS_00036106|Name=TCONS_00036106|organism=Clytia hemisphaerica|type=transcript|length=994bp|location=Sequence derived from alignment at sc0001413:52281..53274 (Clytia hemisphaerica)
GAGATTCAAATCCTGACACCCTTCCATTCAGGAATGTCCCCTCCAACAAT
GTTGGTATCATCGTGCTGTGATAAAGACCATGGGGACATCGATTCTCTCT
CACCTGCATCTAGCTGCCATCATGAGGGATCAAGCCCGTTCTTCTCTCGG
TCTAGCTCCAGTCAGGATGGATTAGGCCCGATCTCAGCTGAATCTAACTA
TCACAGAGATTTACCAAGATCCACCCTATCCGCACATAGCTACAACCATA
TGGTAGCAGGTTCCCTCTCGCCTGCTTCGAGCTACCACCACGAGGAAGAA
ATGATACCATCCCCTTCCGGGCAACATCAACAAAAAAGCAGTGACCATCA
CGTTGAAGCATTACCATCAACGAAAAGATATGGAGGTATCCTACCCCCTT
CAGGATTGAGCTATCTACCACCTTGGCACGTGACCTCCTCAGAAGAGATA
AAAAAGCACCAATGTGAATATTGTCTTAAATGGTTCCAAAGATCGAGTAG
TTTATCGAATCACCGATTAATCCATAAGAACTCCAAATCATACAAATGCA
ACCAATGCAATATGAGTTTTCTTCGTAAGTCTGACCTCGGTAAACACATG
GTCACACATTCTGGATCAAAACCGTACCAGTGTAACGTTTGTGGTAAACG
CTTTTCACAATCTTCGAATATGCTGACTCATCAAAGACGTCATACCGGAA
TCCGTCCGTATTCTTGTGGTGTATGCGGGAAAGCTTTTTACCGGAAAGTT
GATGTCCGAAGACATGCTTCAGTTCATAGGGTTTACTAAAAACAGTCATT
AAGATATATTATTCACAAAATCCCATGGACCTTTTTCAATGTTTATAGAT
TTTGAATCGAATTTTAGGAGGGTGTATTAATTCCGAATGTTAGTATGGAG
TATTGGTATAAAAACCAAcatattacatccctgtctcacagccctggtga
aAACTTTTCCTACAACTAGGATgtaaaatttctatcgaaaacCC

Coding sequence (CDS) from alignment at sc0001413:52281..53274

>TCONS_00036106 ID=TCONS_00036106|Name=TCONS_00036106|organism=Clytia hemisphaerica|type=CDS|length=789bp|location=Sequence derived from alignment at sc0001413:52281..53274 (Clytia hemisphaerica)
GAGATTCAAATCCTGACACCCTTCCATTCAGGAATGTCCCCTCCAACAAT
GTTGGTATCATCGTGCTGTGATAAAGACCATGGGGACATCGATTCTCTCT
CACCTGCATCTAGCTGCCATCATGAGGGATCAAGCCCGTTCTTCTCTCGG
TCTAGCTCCAGTCAGGATGGATTAGGCCCGATCTCAGCTGAATCTAACTA
TCACAGAGATTTACCAAGATCCACCCTATCCGCACATAGCTACAACCATA
TGGTAGCAGGTTCCCTCTCGCCTGCTTCGAGCTACCACCACGAGGAAGAA
ATGATACCATCCCCTTCCGGGCAACATCAACAAAAAAGCAGTGACCATCA
CGTTGAAGCATTACCATCAACGAAAAGATATGGAGGTATCCTACCCCCTT
CAGGATTGAGCTATCTACCACCTTGGCACGTGACCTCCTCAGAAGAGATA
AAAAAGCACCAATGTGAATATTGTCTTAAATGGTTCCAAAGATCGAGTAG
TTTATCGAATCACCGATTAATCCATAAGAACTCCAAATCATACAAATGCA
ACCAATGCAATATGAGTTTTCTTCGTAAGTCTGACCTCGGTAAACACATG
GTCACACATTCTGGATCAAAACCGTACCAGTGTAACGTTTGTGGTAAACG
CTTTTCACAATCTTCGAATATGCTGACTCATCAAAGACGTCATACCGGAA
TCCGTCCGTATTCTTGTGGTGTATGCGGGAAAGCTTTTTACCGGAAAGTT
GATGTCCGAAGACATGCTTCAGTTCATAGGGTTTACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021227XLOC_021227Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036106-exon-sc0001413-1491911889:52281..53274TCONS_00036106-exon-sc0001413-1491911889:52281..53274Clytia hemisphaericaexon
TCONS_00036106-exon-sc0001413-1510915933:52281..53274TCONS_00036106-exon-sc0001413-1510915933:52281..53274Clytia hemisphaericaexon
TCONS_00036106-exon-sc0001413-1575043694:52281..53274TCONS_00036106-exon-sc0001413-1575043694:52281..53274Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036106-proteinTCONS_00036106-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001413supercontigsc0001413:52281..53274 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0440718	0	0	0	0.0481615	0.0113259	0	0	0	0	0.0601987	3.99965	4.81331	1.02763	0.850657	2.52211	2.35954	0.605304	0.675956	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00036106 vs. Swiss-Prot (Human)
Match: GFI1B (Zinc finger protein Gfi-1b OS=Homo sapiens GN=GFI1B PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 6.701e-34
Identity = 60/113 (53.10%), Postives = 79/113 (69.91%), Query Frame = -1 
Query:  230 HVTSSEEIKKHQCEYCLKWFQRSSSLSNHRLIHKNSKSYKCNQCNMSFLRKSDLGKHMVTHSGSKPYQCNVCGKRFSQSSNMLTHQRRHTGIRPYSCGVCGKAFYRKVDVRRH 568
            HV S E  +  +C  C K F+RSS+LS H LIH +++ Y C  C   F +KSD+ KH   H+G KP++C VCGK FSQSSN++TH R+HTG +P+SC +C K F RKVD+RRH
Sbjct:  212 HVHSQE--RSFECRMCGKAFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFSCELCTKGFQRKVDLRRH 322
The following BLAST results are available for this feature:
BLAST of TCONS_00036106 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GFI1B6.701e-3453.10Zinc finger protein Gfi-1b OS=Homo sapiens GN=GFI1... [more]
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