TCONS_00036101 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036101
Unique NameTCONS_00036101
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length631

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036101 ID=TCONS_00036101|Name=TCONS_00036101|organism=Clytia hemisphaerica|type=transcript|length=631bp
TTTTTcgaactttcttctttttcattcacTGACTGACTTTTGAAGGTCAA
ATATTACTTACAAATCTTCAGCACGTAGGATCGTTACAGTCAAAAATGAA
AAGACTTTTTTTCATCGCAGGTTTTATCACCTTGCTTTTGATTTTGGAGT
TAGGTTTTGTACTTGGAAGTGATCGATGTTTTCAATGTCACTCAGAAGTC
TCCCAATGCAGACATCATAACGAAGTTTGTCAAAATAATTCATCATGCTT
CATCAAATCTTATGTTCCTGTCAACAAAACAGAGATGGTTTACCATACTG
GCTGTGTACAGAAATCTGAATGTGAACAGATGTGTCAACAAAATGCTGCT
TCTAACTCTACTGTGGTGATGGCTTCTTGCAAGGTGTCCTGCTGCAACGA
AGATTTCTGCAACAACATTGATGACTACATCAACAGCGCGACCTCGCAAC
AAATGGATACCATGATGGCTTCCTTCTTTGTTGTCATGACAACCGTCAAA
ATGGTGTTTTGAAGAACGACGAAGAATGACAAAGCACATATCTATGTGAA
GGAGTTTCCGTTAGAACTTTGGCTACTTTTTTTATCATCTTTTTATCTCA
CTTGTAATTTATTTACAGCTCTTGCTTCACT
Run BLAST on NCBI

protein sequence of TCONS_00036101-protein

>TCONS_00036101-protein ID=TCONS_00036101-protein|Name=TCONS_00036101-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MKRLFFIAGFITLLLILELGFVLGSDRCFQCHSEVSQCRHHNEVCQNNSS
CFIKSYVPVNKTEMVYHTGCVQKSECEQMCQQNAASNSTVVMASCKVSCC
NEDFCNNIDDYINSATSQQMDTMMASFFVVMTTVKMVF
Run BLAST on NCBI

transcript from alignment at sc0001413:55874..59492+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036101 ID=TCONS_00036101|Name=TCONS_00036101|organism=Clytia hemisphaerica|type=transcript|length=3619bp|location=Sequence derived from alignment at sc0001413:55874..59492+ (Clytia hemisphaerica)
TTTTTcgaactttcttctttttcattcacTGACTGACTTTTGAAGGTCAA
ATATTACTTACAAATCTTCAGCACGTAGGATCGTTACAGTCAAAAATGAA
AAGACTTTTTTTCATCGCAGGTTTTATCACCTTGCTTTTGATTTTGGAGT
TAGGTAAGtcctaccttatcggccctttttacaccggctttaatttaacg
ccggccctttttacgccggcccttattacgccacagcctgattttgggct
tacgccaattagggccgtaaataacaccaaaatttgtcagaatggctatt
tatgcttcaatttacattaaactatcatttttcagtagtaaactgttgaa
aattccattgaaaatcactgatttttgcgaagttttagatatgaagtaaa
acaatggataatctTTTATCTTTGAATTATATACCCAAAGTcctttaaat
aaagaaaaatggtcaaaaattaacgccacttttaagtaaaatttgcaaaa
tgttagccctttttacaccagcccttttaacgccggcccttcaTACGACA
AGAGCCTAGAAATAACGCTAATAAAGGCCGGCGTAagaagggccgataag
gtatatattTTCCACCCTGGATCTTTTTCCTGGTAGAGGGAGTTGCACTC
AATTCAAGCAATCTATCATAGATGCTACTCTGAAGGCTACGTTTTTAAAG
TTTCTCAAAGTGCAATATAAGATCATTTTCACACTTTACTGTTCCGTTTT
GCTCcagtatgattttcgttacggatcgagtgcgTTCATatttggtttcg
gaacgttttggATCAAggaaacggagcagttccgttccgatgaaaaaagt
tgagtgaaaccgtttcgatctgttttgccttgtaacgtcttcttttttga
cgtttcaaattttgacgttcacacttgtttcagAACCGTTTTGGagcgga
acggaacggaaccgtaacgtctgaacatggtctaagggTTTAAAGGAGAG
GAAAAAGCACtgtaaaagtgtaaaaaaaaaaaggaaagcaaaatttttgg
gcaaagtTTTGGGGAAACTGACCAAAAAAGAACAGGAAAATTCACTTCAA
GAGctagatttttggattttttttcaatttttgctaaGTTTTCATTGCAT
TGTAAGGGACCAACTTTGAGACCCTAAACTTCGTCCGTCCAGTTTTCAGA
TCAACTGCCCCCTATATCAAGGTAAACACTGGTATTTGATTTATAGGTCA
AAACAGGTTTGAGTCTTTCTGATCTACCAATCCATAGTTATGGAACTACT
CTTATCTTGTCTAAACTAAATTAAATACCAGCTTTTATAGGGGCAAAGCT
AAAAAAAACAACCGGACgaataaaattgaaaagatgAAATAGTCAGCTGT
AAAAAATGCTCTTGTTTTTCTTCATTAAGGTTTTGTACTTGGAAGTGATC
GATGTTTTCAATGTCACTCAGAAGTCTCCCAATGCAGACATCATAACGAA
GTTTGTCAAAATAATTCATCATGCTTCATCAAATCTTATGTGTAAGTAAA
AAGCACAGTGGAAAAGCTTTACCCAAGAGTACAGGTGTTTTACCCAGTCA
GGAAGGCGGAATGTAACTTAAACACgttgtcacagacccgctgggacatT
CGCCCAACTTGAAAATTTGGTCGGAATTATGCCCCGGTGAAAAAATTCCA
CTACGacttcagccccactggaaagttGATTTAGATTTCGTCTCCTTGAA
AATCAAGGGAAAAATACCACTCCAAACTATAAAGTTTTTACATTGAGATT
TCCTGAGATTTCAATTGAAATTGTTATCCCCACTGAAAGAAAAACTTtac
accggggctgtgagacaggggttaaACAAAATATGTACGGAGTACATTTG
AGcgaaatatctttttagaccgaaaatcaaaatgtatgaaaatcttttta
ctatcaaggtggaaaatttttcaacttttcgtcTACTTTGAGTGATTTTt
ggccacttttcagggtgaaaatgggaaaattttcctgacagggtcccaaa
tttaccaaatattCATATCTAACTGGGTTCATTTTTCAATGGatggcacg
tccccgtcggccgtcatgGTCAGTGCCCCCCTGGGAATGGAGGAGCACCT
TTAATTCTGAAAAAgcagaataaacaaaatattttgtgaaaatttgtaCT
TACGCGGCCTTGGGGAGGAAGAAAGTTGTTCTTTATATCGTTTAAGAATG
CTatgcggaagaaattttcgcggaatttaattttgcgaatttgggtgtaa
atcgcgaaaataaattccgcgaaacacaccaaaattgttaaatcgcgaaa
ttaaattccgcgaaattcgattttttttcttgttcttttattttgttgtt
tttgaccaggtaataccaaaaaatatggacacaattgatttttaagcatt
ataacgtgtatttcttatcaaatataaacaaatataaataacTCCGTAAT
GGTTAAAAGTTAATTtaagttgataacttcttcttaatcgcgaaattaaa
ttccgtgaaacttttgaaatcggctcattcgcgaaattaaattccgcgaN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNgcgaaattaaattccgcgaaatttg
ccattttgaaactctgattcgcgaaattaaattccgcgaaaatttcttct
cgcgaaaatttcttcccttaaggtaagcgTATTTTACGAAAATGGGTTCG
ATAATATCCCTTCATCTTTTCTCTTACTTAGTCCTGTCAACAAAACAGAG
ATGGTTTACCATACTGGCTGTGTACAGAAATCTGAATGTGAACAGATGTG
TCAACAAAATGCTGCTTCTAACTCTACTGTGGTGATGGCTTCTTGCAAGG
TATATTGACCTTGATTTTAGTTTGATTTCTACCACAGTATAATGGAAACA
GAAATTTAGCTAGTACCAAACGTTATTTTGAAGGATCCTCGTGAATGCGT
AAATGGATTTTTTATCGTTGCAGGTAAATGCgtgtaaataataaaaaaag
attttgtgaaTCCATGAATTGAAAACATTTGCGTAAACGTGAAACTTGTG
TTTTTAATTGTGTCAGTATGTTATAGTCTcgcaattttttaaaaacaaat
gcgTTAATTTTTCCGTTTAGCGAAAATTTCTGTCGATCTAGGCAATTTTT
AcctaatttcgaaaaaaaaaatcccgCTTTTCCTAAAAGTCGACGAACAA
AGAAATTGCGTGAACGTAGAGAAAAAGTGTAGCAAAGTGACCTCAATATT
CATCAATCTAAAATATTTTAGGTGTCCTGCTGCAACGAAGATTTCTGCAA
CAACATTGATGACTACATCAACAGCGCGACCTCGCAACAAATGGATACCA
TGATGGCTTCCTTCTTTGTTGTCATGACAACCGTCAAAATGGTGTTTTGA
AGAACGACGAAGAATGACAAAGCACATATCTATGTGAAGGAGTTTCCGTT
AGAACTTTGGCTACTTTTTTTATCATCTTTTTATCTCACTTGTAATTTAT
TTACAGCTCTTGCTTCACT

Coding sequence (CDS) from alignment at sc0001413:55874..59492+

>TCONS_00036101 ID=TCONS_00036101|Name=TCONS_00036101|organism=Clytia hemisphaerica|type=CDS|length=1668bp|location=Sequence derived from alignment at sc0001413:55874..59492+ (Clytia hemisphaerica)
ATGAAAAGACTTTTTTTCATCGCAGGTTTTATCACCTTGCTTTTGATTTT
GGAGTTAGGTTTTGTACTTGGAAGTGATCGATGTTTTCAATGTCACTCAG
AAGTCTCCCAATGCAGACATCATAACGAAGTTTGTCAAAATAATTCATCA
TGCTTCATCAAATCTTATGTTCCTGTCAACAAAACAGAGATGGTTTACCA
TACTGGCTGTGTACAGAAATCTGAATGTGAACAGATGTGTCAACAAAATG
CTGCTTCTAACTCTACTGTGGTGATGGCTTCTTGCAAGGTGTCCTGCTGC
AACGAAGATTTCTGCAACAACATTGATGACTACATCAACAGCGCGACCTC
GCAACAAATGGATACCATGATGGCTTCCTTCTTTGTTGTCATGACAACCG
TCAAAATGGTGTTTTGAATGAAAAGACTTTTTTTCATCGCAGGTTTTATC
ACCTTGCTTTTGATTTTGGAGTTAGGTTTTGTACTTGGAAGTGATCGATG
TTTTCAATGTCACTCAGAAGTCTCCCAATGCAGACATCATAACGAAGTTT
GTCAAAATAATTCATCATGCTTCATCAAATCTTATGTTCCTGTCAACAAA
ACAGAGATGGTTTACCATACTGGCTGTGTACAGAAATCTGAATGTGAACA
GATGTGTCAACAAAATGCTGCTTCTAACTCTACTGTGGTGATGGCTTCTT
GCAAGGTGTCCTGCTGCAACGAAGATTTCTGCAACAACATTGATGACTAC
ATCAACAGCGCGACCTCGCAACAAATGGATACCATGATGGCTTCCTTCTT
TGTTGTCATGACAACCGTCAAAATGGTGTTTTGAATGAAAAGACTTTTTT
TCATCGCAGGTTTTATCACCTTGCTTTTGATTTTGGAGTTAGGTTTTGTA
CTTGGAAGTGATCGATGTTTTCAATGTCACTCAGAAGTCTCCCAATGCAG
ACATCATAACGAAGTTTGTCAAAATAATTCATCATGCTTCATCAAATCTT
ATGTTCCTGTCAACAAAACAGAGATGGTTTACCATACTGGCTGTGTACAG
AAATCTGAATGTGAACAGATGTGTCAACAAAATGCTGCTTCTAACTCTAC
TGTGGTGATGGCTTCTTGCAAGGTGTCCTGCTGCAACGAAGATTTCTGCA
ACAACATTGATGACTACATCAACAGCGCGACCTCGCAACAAATGGATACC
ATGATGGCTTCCTTCTTTGTTGTCATGACAACCGTCAAAATGGTGTTTTG
AATGAAAAGACTTTTTTTCATCGCAGGTTTTATCACCTTGCTTTTGATTT
TGGAGTTAGGTTTTGTACTTGGAAGTGATCGATGTTTTCAATGTCACTCA
GAAGTCTCCCAATGCAGACATCATAACGAAGTTTGTCAAAATAATTCATC
ATGCTTCATCAAATCTTATGTTCCTGTCAACAAAACAGAGATGGTTTACC
ATACTGGCTGTGTACAGAAATCTGAATGTGAACAGATGTGTCAACAAAAT
GCTGCTTCTAACTCTACTGTGGTGATGGCTTCTTGCAAGGTGTCCTGCTG
CAACGAAGATTTCTGCAACAACATTGATGACTACATCAACAGCGCGACCT
CGCAACAAATGGATACCATGATGGCTTCCTTCTTTGTTGTCATGACAACC
GTCAAAATGGTGTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021222XLOC_021222Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036101-exon-sc0001413-1491911889:55874..56026TCONS_00036101-exon-sc0001413-1491911889:55874..56026Clytia hemisphaericaexon
TCONS_00036101-exon-sc0001413-1510915933:55874..56026TCONS_00036101-exon-sc0001413-1510915933:55874..56026Clytia hemisphaericaexon
TCONS_00036101-exon-sc0001413-1575043694:55874..56026TCONS_00036101-exon-sc0001413-1575043694:55874..56026Clytia hemisphaericaexon
TCONS_00036101-exon-sc0001413-1491911889:57303..57414TCONS_00036101-exon-sc0001413-1491911889:57303..57414Clytia hemisphaericaexon
TCONS_00036101-exon-sc0001413-1510915933:57303..57414TCONS_00036101-exon-sc0001413-1510915933:57303..57414Clytia hemisphaericaexon
TCONS_00036101-exon-sc0001413-1575043694:57303..57414TCONS_00036101-exon-sc0001413-1575043694:57303..57414Clytia hemisphaericaexon
TCONS_00036101-exon-sc0001413-1491911889:58705..58822TCONS_00036101-exon-sc0001413-1491911889:58705..58822Clytia hemisphaericaexon
TCONS_00036101-exon-sc0001413-1510915933:58705..58822TCONS_00036101-exon-sc0001413-1510915933:58705..58822Clytia hemisphaericaexon
TCONS_00036101-exon-sc0001413-1575043694:58705..58822TCONS_00036101-exon-sc0001413-1575043694:58705..58822Clytia hemisphaericaexon
TCONS_00036101-exon-sc0001413-1491911889:59245..59492TCONS_00036101-exon-sc0001413-1491911889:59245..59492Clytia hemisphaericaexon
TCONS_00036101-exon-sc0001413-1510915933:59245..59492TCONS_00036101-exon-sc0001413-1510915933:59245..59492Clytia hemisphaericaexon
TCONS_00036101-exon-sc0001413-1575043694:59245..59492TCONS_00036101-exon-sc0001413-1575043694:59245..59492Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036101-proteinTCONS_00036101-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001413supercontigsc0001413:55874..59492 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.108086	0	0	0	0	0	0.559126	0.232263	0.047738	0	1.89334	1.81124	1.07243	8.51014	4.95833	3.92511	5.59083	7.44904	5.50603	9.74744	1.72916	0.984216	0.0933117	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036101 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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