TCONS_00036090 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036090
Unique NameTCONS_00036090
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length473

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036090 ID=TCONS_00036090|Name=TCONS_00036090|organism=Clytia hemisphaerica|type=transcript|length=473bp
CatgattttcaatttcttcGAATTGATTTTACACGAGGATCGAGTTGTTG
ATTTATCAGTGAAAAAAGACTTTCTTGAACCTTTGAAAAGTTCCAACATT
GACATTGACTAAGAATCAATTACTTGTCCAAAAAATTCTCCAAATTGTAT
CACTTTGGTTGTAGAGGAAAAGGAAATTCACGTCAATTCTTTTATACTTA
CCAATAATTCTCCAGTGTTCAAAGCAATGTTGAGTTCAACACATTTCATA
GAAGGTCAGAGTAGAAGAATCGACTTGCCTGGCAAGAAATTGACACATGT
TGCATGCCTTTNTAGAAGGTCAGAGTAGAAGAATCGACTTGCCTGGCAAG
AAATTGACACATGTTGCATGCCTTTTGCACCATTTAGCCTCACTTTGTCA
CTCTTTTAACTGTAAGTACTTTTGCAACATTTAGCCTCGCTTGTCTctct
tttaactgtttttttttataagc
Run BLAST on NCBI

transcript from alignment at sc0001411:63071..63543

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036090 ID=TCONS_00036090|Name=TCONS_00036090|organism=Clytia hemisphaerica|type=transcript|length=473bp|location=Sequence derived from alignment at sc0001411:63071..63543 (Clytia hemisphaerica)
gcttataaaaaaaaacagttaaaagagAGACAAGCGAGGCTAAATGTTGC
AAAAGTACTTACAGTTAAAAGAGTGACAAAGTGAGGCTAAATGGTGCAAA
AGGCATGCAACATGTGTCAATTTCTTGCCAGGCAAGTCGATTCTTCTACT
CTGACCTTCTANAAAGGCATGCAACATGTGTCAATTTCTTGCCAGGCAAG
TCGATTCTTCTACTCTGACCTTCTATGAAATGTGTTGAACTCAACATTGC
TTTGAACACTGGAGAATTATTGGTAAGTATAAAAGAATTGACGTGAATTT
CCTTTTCCTCTACAACCAAAGTGATACAATTTGGAGAATTTTTTGGACAA
GTAATTGATTCTTAGTCAATGTCAATGTTGGAACTTTTCAAAGGTTCAAG
AAAGTCTTTTTTCACTGATAAATCAACAACTCGATCCTCGTGTAAAATCA
ATTCgaagaaattgaaaatcatG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021220XLOC_021220Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036090-exon-sc0001411-1491911889:63071..63543TCONS_00036090-exon-sc0001411-1491911889:63071..63543Clytia hemisphaericaexon
TCONS_00036090-exon-sc0001411-1510915933:63071..63543TCONS_00036090-exon-sc0001411-1510915933:63071..63543Clytia hemisphaericaexon
TCONS_00036090-exon-sc0001411-1575043694:63071..63543TCONS_00036090-exon-sc0001411-1575043694:63071..63543Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001411supercontigsc0001411:63071..63543 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.34824	6.03633	5.52036	3.6461	0	0.501577	0	0.186597	0.197154	0.319366	0.588933	0.562571	0.365432	1.175	1.20953	0.595648	0.507862	0.755363	0	0.518429	0.222022	0.646946	3.60981	2.14556	0	0	0.44782	0	1.24904	2.57137
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036090 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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